mRNA_E-siliculosus-1a_M_contig93.17342.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17342.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17342.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:216791..217120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size288
Model size292
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17342.1prot_E-siliculosus-1a_M_contig93.17342.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 216791..217118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936470.733955-CDS-E-siliculosus-1a_M_contig93:216790..2170321622936470.733955-CDS-E-siliculosus-1a_M_contig93:216790..217032Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 216791..217032 -
1696251093.6995387-CDS-E-siliculosus-1a_M_contig93:216790..2170321696251093.6995387-CDS-E-siliculosus-1a_M_contig93:216790..217032Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 216791..217032 -
1622936470.7790937-CDS-E-siliculosus-1a_M_contig93:217072..2171181622936470.7790937-CDS-E-siliculosus-1a_M_contig93:217072..217118Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 217073..217118 -
1696251093.7093163-CDS-E-siliculosus-1a_M_contig93:217072..2171181696251093.7093163-CDS-E-siliculosus-1a_M_contig93:217072..217118Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 217073..217118 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936470.8003545-UTR-E-siliculosus-1a_M_contig93:217118..2171201622936470.8003545-UTR-E-siliculosus-1a_M_contig93:217118..217120Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 217119..217120 -
1696251093.7213836-UTR-E-siliculosus-1a_M_contig93:217118..2171201696251093.7213836-UTR-E-siliculosus-1a_M_contig93:217118..217120Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 217119..217120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17342.1

>prot_E-siliculosus-1a_M_contig93.17342.1 ID=prot_E-siliculosus-1a_M_contig93.17342.1|Name=mRNA_E-siliculosus-1a_M_contig93.17342.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=96bp
MPFGRDCPDHAAVSTVEHAKYLLATNGSSSWLSLWSTGILSESLTQIDRC
PQEKVGHVYRQGWELRIATWWLATSLKTMHPLSKTRVVPRSFRLTG
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mRNA from alignment at E-siliculosus-1a_M_contig93:216791..217120-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17342.1 ID=mRNA_E-siliculosus-1a_M_contig93.17342.1|Name=mRNA_E-siliculosus-1a_M_contig93.17342.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=330bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:216791..217120- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GAATGCCGTTCGGACGTGATTGCCCCGACCATGCTGCTGTGTCGACTGGC
ATGTTGGCAAGCGTTCGTGAATTTTGGGCGTCGTACAGTTGAGCACGCGA
AGTACCTGCTGGCAACGAACGGTAGCTCGTCCTGGTTGTCCCTTTGGAGT
ACTGGCATCCTGTCAGAATCACTCACACAAATAGATCGGTGCCCACAAGA
GAAAGTTGGTCATGTATACAGACAAGGGTGGGAATTGCGTATAGCGACAT
GGTGGCTCGCAACGTCGTTGAAAACCATGCACCCGCTAAGCAAGACAAGG
GTCGTGCCGCGCAGCTTTCGGTTAACCGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:216791..217120-

>mRNA_E-siliculosus-1a_M_contig93.17342.1 ID=mRNA_E-siliculosus-1a_M_contig93.17342.1|Name=mRNA_E-siliculosus-1a_M_contig93.17342.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=576bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:216791..217120- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGTTCGGACGTGATTGCCCCGACCATGCTGCTGTGTCGACTGATGC
CGTTCGGACGTGATTGCCCCGACCATGCTGCTGTGTCGACTGTTGAGCAC
GCGAAGTACCTGCTGGCAACGAACGGTAGCTCGTCCTGGTTGTCCCTTTG
GAGTACTGGCATCCTGTCAGAATCACTCACACAAATAGATCGGTGCCCAC
AAGAGAAAGTTGGTCATGTATACAGACAAGGGTGGGAATTGCGTATAGCG
ACATGGTGGCTCGCAACGTCGTTGAAAACCATGCACCCGCTAAGCAAGAC
AAGGGTCGTGCCGCGCAGCTTTCGGTTAACCGGCTTGAGCACGCGAAGTA
CCTGCTGGCAACGAACGGTAGCTCGTCCTGGTTGTCCCTTTGGAGTACTG
GCATCCTGTCAGAATCACTCACACAAATAGATCGGTGCCCACAAGAGAAA
GTTGGTCATGTATACAGACAAGGGTGGGAATTGCGTATAGCGACATGGTG
GCTCGCAACGTCGTTGAAAACCATGCACCCGCTAAGCAAGACAAGGGTCG
TGCCGCGCAGCTTTCGGTTAACCGGC
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