mRNA_E-siliculosus-1a_M_contig93.17322.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17322.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17322.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:6022..6756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size324
Model size493
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17322.1prot_E-siliculosus-1a_M_contig93.17322.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 6048..6613 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936470.6402025-UTR-E-siliculosus-1a_M_contig93:6021..60471622936470.6402025-UTR-E-siliculosus-1a_M_contig93:6021..6047Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 6022..6047 +
1696251093.6451643-UTR-E-siliculosus-1a_M_contig93:6021..60471696251093.6451643-UTR-E-siliculosus-1a_M_contig93:6021..6047Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 6022..6047 +
1622936470.6864018-UTR-E-siliculosus-1a_M_contig93:6613..67561622936470.6864018-UTR-E-siliculosus-1a_M_contig93:6613..6756Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 6614..6756 +
1696251093.684739-UTR-E-siliculosus-1a_M_contig93:6613..67561696251093.684739-UTR-E-siliculosus-1a_M_contig93:6613..6756Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 6614..6756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936470.6570468-CDS-E-siliculosus-1a_M_contig93:6047..62701622936470.6570468-CDS-E-siliculosus-1a_M_contig93:6047..6270Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 6048..6270 +
1696251093.6606178-CDS-E-siliculosus-1a_M_contig93:6047..62701696251093.6606178-CDS-E-siliculosus-1a_M_contig93:6047..6270Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 6048..6270 +
1622936470.6730478-CDS-E-siliculosus-1a_M_contig93:6512..66131622936470.6730478-CDS-E-siliculosus-1a_M_contig93:6512..6613Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 6513..6613 +
1696251093.6717432-CDS-E-siliculosus-1a_M_contig93:6512..66131696251093.6717432-CDS-E-siliculosus-1a_M_contig93:6512..6613Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 6513..6613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17322.1

>prot_E-siliculosus-1a_M_contig93.17322.1 ID=prot_E-siliculosus-1a_M_contig93.17322.1|Name=mRNA_E-siliculosus-1a_M_contig93.17322.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=108bp
MKTAMISEGSESGESPNKTLNPNFRRRHRRAALANQLWICWIRIMSLAQV
QPSSTLVLGELCECMPAPFSKGSRAKQGADHGWQGVGGGREGAPRQTAAG
HRERWLW*
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mRNA from alignment at E-siliculosus-1a_M_contig93:6022..6756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17322.1 ID=mRNA_E-siliculosus-1a_M_contig93.17322.1|Name=mRNA_E-siliculosus-1a_M_contig93.17322.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=735bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:6022..6756+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTCCTGGCCACCCCCGTGGTTTCGAAATGAAAACCGCCATGATCAGCGAG
GGGAGTGAGAGCGGAGAGTCACCAAACAAAACCCTGAACCCAAATTTTCG
CCGGCGCCACCGCCGCGCAGCCTTGGCCAATCAGCTGTGGATATGTTGGA
TACGTATCATGTCCCTGGCGCAAGTACAACCCTCGTCAACCCTCGTCCTC
GGTGAGCTCTGCGAGTGCATGCCCGCGCCATTTTCGAAGGGATCGCGAGG
TGAGGCAAAGTTGAGCTCTTCGGCGCGGCAGTAAAAAATAAAGAAGATGG
CAGGACGAGAGGGGGTAAGTACACTGCAACACGTCATGAAGAGATCTTGG
GACATTTTACGCGCACCTGCTGGCTCTCCTGCACGTTGCCGTCGAGGTGT
CTGCATCAATCTCGTCGGGAGTCGGCAAGGGGCTTCGCAAATATATTACC
CCCCCCCCCTCTTCGACGCTTTCCGCCGCTCCCGGAGGTAGCAAAACAAG
GAGCCGATCATGGATGGCAAGGAGTCGGAGGCGGCCGAGAGGGTGCGCCC
AGACAAACAGCAGCAGGGCACAGGGAACGGTGGTTGTGGTGACCTGTGTC
TCCGTTGTGAACGCTGCTGTCCCTGCTGTGCCCGCCTCACTTCTTTGCTG
GAGTCGGGGGCGGTCAAGAGGGTGCGGCTCGATGACAATCAGCGGGACGG
CGGGGGTGGCAACGAGTCGGAGACGGTCGAGACGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:6022..6756+

>mRNA_E-siliculosus-1a_M_contig93.17322.1 ID=mRNA_E-siliculosus-1a_M_contig93.17322.1|Name=mRNA_E-siliculosus-1a_M_contig93.17322.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=648bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:6022..6756+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAAAACCGCCATGATCAGCGAGGGGAGTGAGAGCGGAGAGTCACCAAA
CAAAACCCTGAACCCAAATTTTCGCCGGCGCCACCGCCGCGCAGCCTTGG
CCAATCAGCTGTGGATATGTTGGATACGTATCATGTCCCTGGCGCAAGTA
CAACCCTCGTCAACCCTCGTCCTCGGTGAGCTCTGCGAGTGCATGCCCGC
GCCATTTTCGAAGGGATCGCGAGATGAAAACCGCCATGATCAGCGAGGGG
AGTGAGAGCGGAGAGTCACCAAACAAAACCCTGAACCCAAATTTTCGCCG
GCGCCACCGCCGCGCAGCCTTGGCCAATCAGCTGTGGATATGTTGGATAC
GTATCATGTCCCTGGCGCAAGTACAACCCTCGTCAACCCTCGTCCTCGGT
GAGCTCTGCGAGTGCATGCCCGCGCCATTTTCGAAGGGATCGCGAGCAAA
ACAAGGAGCCGATCATGGATGGCAAGGAGTCGGAGGCGGCCGAGAGGGTG
CGCCCAGACAAACAGCAGCAGGGCACAGGGAACGGTGGTTGTGGTGACAA
AACAAGGAGCCGATCATGGATGGCAAGGAGTCGGAGGCGGCCGAGAGGGT
GCGCCCAGACAAACAGCAGCAGGGCACAGGGAACGGTGGTTGTGGTGA
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