mRNA_E-siliculosus-1a_M_contig92.17304.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_M_contig92.17304.1
Unique Name	mRNA_E-siliculosus-1a_M_contig92.17304.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig92.17304.1 vs. uniprot
Match: D7FKR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR8_ECTSI)

HSP 1 Score: 806 bits (2081), Expect = 3.090e-291
Identity = 404/417 (96.88%), Postives = 404/417 (96.88%), Query Frame = 2

Query:   83 MRLEALFVAFVPVSVTAFSFVSKLRPNQVSLEVRPQAMSRYRTGRTSRPRTLRPLWMMSFGAGATDRYSWDETDKEVNVKVRLPAWAKGKSVVLDMTNTHVKLFLKEEESTPIIEGDLRGAILMDGSYWTMETLDDNGKMLYLTLEKAPQLTGLGPWMGVVQGEKQVNSDYPEEDKASFFRFAAEIAAMAHEEKKAQDAESGAPKHTGVVDEDGFCRDLLAVQAMSGAMVARQVPVNGNALFSAVAISKWFIESGEHPDASSPEIETIAKDLRQKTLDYLTKAYKENAPIYMSGEYMDARPFVAAQAKANSMADGDEYLQAMRDDTMWGGGGEVVGLTHVLKRPLHVYDLVSTGRRFGLRVIGRFGAPLYAKERPIHIVSTYARFPDLDPGSQSAEGNHYVALYPYEDVPEKNKGKL 1333
            MRLE L VAFVPVSVTAFSFVSKLRPNQ SLEVRPQ MSRYRTGR SRPRTLRPLWMMSFGAGATDRYSWDETDKEVNVK RLPAWAKGKSVVLDMTNTHVKLFLKEEESTPIIEGDLRGAILMDGSYWTMETLDDNGKMLYLTLEKAPQLTGLGPWMGVVQGEKQVNSDYPEEDKA      AEIAAMAHEEKKAQDAESG PKHTGVVDEDGFCRDLLAVQAMSGAMVARQVPVNGNALFSAVAISKWFIESGEHPDASSPEIETIAKDLRQKTLDYLTKAYKENAPIYMSGEYMDARPFVAAQAKANSMADGDEYLQAMRDDTMWGGGGEVVGLTHVLKRPLHVYDLVSTGRRFGLRVIGRFGAPLYAKERPIHIVSTYARFPDLDPGSQSAEGNHYVALYPYEDVPEKNKGKL
Sbjct:    1 MRLETLLVAFVPVSVTAFSFVSKLRPNQFSLEVRPQVMSRYRTGRASRPRTLRPLWMMSFGAGATDRYSWDETDKEVNVKARLPAWAKGKSVVLDMTNTHVKLFLKEEESTPIIEGDLRGAILMDGSYWTMETLDDNGKMLYLTLEKAPQLTGLGPWMGVVQGEKQVNSDYPEEDKA------AEIAAMAHEEKKAQDAESGTPKHTGVVDEDGFCRDLLAVQAMSGAMVARQVPVNGNALFSAVAISKWFIESGEHPDASSPEIETIAKDLRQKTLDYLTKAYKENAPIYMSGEYMDARPFVAAQAKANSMADGDEYLQAMRDDTMWGGGGEVVGLTHVLKRPLHVYDLVSTGRRFGLRVIGRFGAPLYAKERPIHIVSTYARFPDLDPGSQSAEGNHYVALYPYEDVPEKNKGKL 411

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BLAST of mRNA_E-siliculosus-1a_M_contig92.17304.1 vs. uniprot
Match: D8LB24_ECTSI (OTU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB24_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 3.380e-33
Identity = 78/209 (37.32%), Postives = 114/209 (54.55%), Query Frame = 2

Query:  695 KHTGVVDEDGFCRDLLAVQAMSGAMVARQVPVNGNALFSAVAISKWFIESGEHPDASSPEIETIAKDLRQKTLDYLTKAYK--------ENAPIYMSGEYMDARPFVAAQAKANSMADGDEYLQAMRDDTMWGGGGEVVGLTHVLKRPLHVYDLVSTGRRFGLRVIGRFGAPLYAKERPIHIVSTYARFPDLDPGSQSAEGNHYVALYP 1297
            +H+  +  DGF  D  AVQ +S  M  RQVP +GN LF A++       +G HP     E+   +  LR+  +DYL    K        E+ P+Y      +    VAAQ    +    + Y + MR  ++WGGG E+V L++ L RP+HVY+L S G  F  R +  FG+P +  ++ IHI+S  +RFP+L PG Q A GNH++AL+P
Sbjct:   26 RHSAKIKRDGFLTDSFAVQGISTNMAVRQVPGDGNCLFHAISACLDHACNGTHPSLDLSELMPKSAALRKVAVDYLVDNLKKTLYLEKEESVPVY------ELLSVVAAQYNMTA----EHYCEVMRQSSVWGGGPEIVALSNALCRPIHVYELASNGVSFCFRRMACFGSPSFDDKQAIHILSADSRFPNLKPGRQLANGNHFLALFP 224

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BLAST of mRNA_E-siliculosus-1a_M_contig92.17304.1 vs. uniprot
Match: A0A7S1V4T9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V4T9_9STRA)

HSP 1 Score: 136 bits (343), Expect = 6.020e-33
Identity = 70/186 (37.63%), Postives = 116/186 (62.37%), Query Frame = 2

Query:  776 RQVPVNGNALFSAVAISKWFIESGEH-PDASSPEIETIAKDLRQKTLDYLTKAYKENAPIYMSG-EYMDARPFVAAQAKANSMADGDEYLQAMRDDTMWGGGGEVVGLTHVLKRPLHVYDLVSTGRR---FGLRVIGRFGAPLYAKERPIHIVSTYARFPDLDPGSQSAEGNHYVALYPYEDVPEK 1318
            RQVP +GN LF A+++  +  E G H P     +++  +K LRQ+ +DY+ K  K    +++   E++ A+  + + A    +  GDEYL+ MR D+ WGGG E+V L+++L+RP+HVY+L +  R    F LR +  FG+P + ++  +HI+S  +RFPD+ PG Q  EGNH++A++P    P++
Sbjct:    2 RQVPGDGNCLFHALSVCLYKSEHGCHFPFGDLGKLQQCSKSLRQRAVDYVKK--KPRRLLFLQAREFLRAKDLIDSSAAQYGVT-GDEYLETMRQDSTWGGGPEIVALSNMLRRPIHVYELYAPNRNVQDFRLRRMCCFGSPKFDRQEALHILSADSRFPDVQPGKQKKEGNHFLAIFPQAKKPKR 184

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BLAST of mRNA_E-siliculosus-1a_M_contig92.17304.1 vs. uniprot
Match: A0A835YZQ7_9STRA (OTU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZQ7_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.410e-29
Identity = 73/203 (35.96%), Postives = 111/203 (54.68%), Query Frame = 2

Query:  695 KHTGVVDEDGFCRDLLAVQAMSGAMVARQVPVNGNALFSAVAISKWFIESGEHPDASSPEIETIAKDLRQKTLDYLTKAYKENAPIYMSGEYMDARPFVAAQAKANSMADGDEYLQAMRDDTMWGGGGEVVGLTHVLKRPLHVYDLVS-TGRRFGLRVIGRFGAPLYAKE-RPIHIVSTYARFPDLDPGSQSAEGNHYVALYP 1297
            +H+  +  DGF  +   V+ +   M  RQVP +GN LF +++      ++  HP     ++   +  LR+  +DYL  A  +       GE +     +   A   +M   D Y + MR   +WGGG E+V L++ L+RP+HVY+L +  GRRF  R +  FG+PL+  E  PIHI+S  ARFP+L PG Q A GNH++ L+P
Sbjct:   28 RHSAQIQRDGFLTEAFPVEGLPVQMQVRQVPGDGNCLFHSISACLEHADTSSHPSLHLNDLLPKSAVLRKMAVDYLV-ADPDRVLYLEGGETVPVNELLTVVATQYNMTV-DAYCKHMRLPAVWGGGPEIVALSNCLRRPIHVYELAAGAGRRFCFRRMACFGSPLFDGECEPIHILSADARFPNLAPGQQLANGNHFLCLFP 228

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BLAST of mRNA_E-siliculosus-1a_M_contig92.17304.1 vs. uniprot
Match: A0A7S3L1U5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L1U5_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.890e-28
Identity = 75/218 (34.40%), Postives = 119/218 (54.59%), Query Frame = 2

Query:  719 DGFCRD--------------LLAVQAMSGAMVARQVPVNGNALFSAVAISKWFIESGEHPDASS--PEIETIAKDLRQKTLDYLTKAYKENAPIYMSG-EYMDARPFVAAQAKANSMADGDEYLQAMRDDTMWGGGGEVVGLTHVLKRPLHVYDLV--------STGRRFGLRVIGRFGAPLYAKERPIHIVSTYARFPDLDPGSQSAEGNHYVALYP 1297
            DGF RD              L   Q +      RQVP +GN LF ++++      +G H D S    ++ T ++ LRQ+ +D L + +K    +++ G E + +   V A A+   +   +EY QAM  D +WGGG E+V L+++L+RP+HVY+L         S+G  F LR +  FG+P + +   +HI+S  +RFPDL PG Q + GNH++A++P
Sbjct:   27 DGFLRDEFRRIPGEWEEEVRLRTRQRLETKCRIRQVPGDGNCLFHSISLCLQHATNGTHWDVSKCLEDLYTHSQTLRQQAVDCLRQPHKR---LFLQGRETLKSGELVQAAAQQYGLTS-EEYCQAMEQDCVWGGGPEIVALSNLLQRPIHVYELATSSSSSKPSSGNTFVLRRMACFGSPRFDRREALHILSADSRFPDLLPGEQLSAGNHFLAVFP 240

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BLAST of mRNA_E-siliculosus-1a_M_contig92.17304.1 vs. uniprot
Match: B7G567_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G567_PHATC)

HSP 1 Score: 125 bits (314), Expect = 5.360e-28
Identity = 68/193 (35.23%), Postives = 117/193 (60.62%), Query Frame = 2

Query:  776 RQVPVNGNALFSAVAISKWFIESGEHPDASSPEIETI------AKDLRQKTLDYLTKAYKENAPIYMSG-EYMDARPFVAAQAKANSMADGDEYLQAMRDDTMWGGGGEVVGLTHVLKRPLHVYDLVSTGRR----------FGLRVIGRFGAPLYAKERPIHIVSTYARFPDLDPGSQSAEGNHYVALYPYE 1303
            RQVP +GN LF ++++   +  +G H D ++ +   +      ++ LR+K ++ L  + +    +++ G E + A   V A A+  +++  +EY  +M+ D++WGGG E+V L +VL+RP+HVY+L ST  R          F LR +  FG+P + + +P+HI+S  +RFPD+ PG Q A GNH++AL+P+E
Sbjct:   94 RQVPGDGNCLFHSISLCLQYAANGTHWDLNTSDRRGLDALYEHSQTLRRKAVEVLQHSQRR---LFLQGRESLRAHELVQAAAQQYNLSP-EEYCASMQQDSVWGGGPEIVALCNVLQRPIHVYELASTTTRSSRNDDERQSFVLRRMACFGSPKFDRRQPLHILSADSRFPDVTPGQQLASGNHFLALFPHE 282

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BLAST of mRNA_E-siliculosus-1a_M_contig92.17304.1 vs. uniprot
Match: A0A4D9CXM6_9STRA (OTU domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXM6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.200e-21
Identity = 61/204 (29.90%), Postives = 103/204 (50.49%), Query Frame = 2

Query:  710 VDEDGFCRDLLAVQAMSGAMVARQVPVNGNALFSAVAISKWFIESGEHPDASSPEIETIAKDLRQKTLDYLTKAYKENAPIYMSGEYMDARPFVAAQAKANSMADGDEYLQAMRDDTMWGGGGEVVGLTHVLKRPLHVYDLVSTG----RRFGLRVIGRFGAPLYAKERPIHIVSTYARFPDLDPGSQSAEGNHYVALYPYEDV 1309
            + + GF  +   V      M  RQVP +G+ LF A+ ++  +  +G HP      +   A  LRQ  LDYL+        +  + + M ++  +   +K   ++  ++YL  +RD   WGGG E+V L + L+RP+ +Y+L   G     RF  + +   G P ++ ++ +HI+     FPD  P   +  GNH++AL+P EDV
Sbjct:   42 ISQGGFFSETWDVHHSKSKMRVRQVPGDGSCLFHAIYVALAYATNGSHPQEDYEAMCKAAGVLRQTALDYLSDDPSRLLTVTYNQD-MKSQELLDMTSKEMGLS-AEQYLVRLRDPKEWGGGLEIVALANALERPIFLYELKPVGLLFWSRFVFKKMVECGMPKFSPKKSLHILIADCNFPDCAPYFYNKAGNHFLALFPCEDV 243

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BLAST of mRNA_E-siliculosus-1a_M_contig92.17304.1 vs. uniprot
Match: A0A1Z5JTL4_FISSO (OTU domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTL4_FISSO)

HSP 1 Score: 104 bits (259), Expect = 7.670e-21
Identity = 68/228 (29.82%), Postives = 117/228 (51.32%), Query Frame = 2

Query:  701 TGVVDEDGFCRDLL--------------AVQAMSGAMVARQVPVNGNALFSAVAISKWFIESGEHPDASS--PEIETIAKDLRQKTLDYLTKAYKENAPIYMSG-EYMDARPFVAAQAKANSMADGDEYLQAMRDDTMWGGGGEVVGLTHVLKRPLHVYDLV--STGRR----------FGLRVIGRFGAPLYAKERPIHIVSTYARFPDLDPGSQSAEGNHYVALYP 1297
            + ++DE GF + L                V   +     RQVP +GN LF ++++      +G H D  +   E+   ++ LR K +  L +  ++   +++ G E M A   V + A+   +   +EY   M +D +WGGG E+V L+++L+RP+HVY+L   S G            F L+ +  FG+P +  +R +HI+S  +RFPD+ PG Q   GNH+++++P
Sbjct:   52 SALIDEKGFLKGLFRRKKGDWEEEFPMRTVYHTNHPCQIRQVPGDGNCLFHSLSLCLQHAVNGTHWDMPNRLDELYEHSRSLRAKAVACLRQNKRK---LFLQGKESMRAIELVTSAAQQYDLTP-EEYCATMEEDCVWGGGPEIVALSNILQRPIHVYELAMESPGAEDATDQPKKPTFILKRMACFGSPRFDGKRALHILSADSRFPDIQPGEQMVAGNHFLSVFP 275

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BLAST of mRNA_E-siliculosus-1a_M_contig92.17304.1 vs. uniprot
Match: A0A7S3Q5V5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q5V5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.840e-17
Identity = 55/177 (31.07%), Postives = 83/177 (46.89%), Query Frame = 2

Query:  935 KENAPIYMSG-EYMDARPFVAAQAKANSMADGDEYLQAMRDDTMWGGGGEVVGLTHVLKRPLHVYDLVS--------------------------------------------TGRRFGLRVIGRFGAPLYAKERPIHIVSTYARFPDLDPGSQSAEGNHYVALYPYEDVPEKNKGK 1330
            K N P+++ G E++  +  +   +    M+ G EY   M+ + +WGGG E+VGL + LKRP+HVY+L+S                                            T   F LR +  FG+P +    P+HI+S   RFPDL PG Q++ GNH++AL+PY    +  K K
Sbjct:  271 KSNKPLFLQGSEFLRPKELLHVASSQYGMS-GQEYCDQMKHNGVWGGGPEIVGLCNYLKRPIHVYELISMKPKCKIKIRPRGYGLLGHKRSPSGEGLEDVEYSDDCSHGTTSSTKPEFRLRRMACFGSPKFDHREPLHILSADCRFPDLTPGLQASAGNHFMALFPYSSPLKIKKQK 446

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BLAST of mRNA_E-siliculosus-1a_M_contig92.17304.1 vs. uniprot
Match: A0A7S2FV93_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FV93_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.600e-11
Identity = 42/115 (36.52%), Postives = 68/115 (59.13%), Query Frame = 2

Query:  278 DRYSWDETDKEVNVKVRLPAWAKGKSVVLDMTNTHVKLFLKEEESTPIIEGDLRGAILMDGSYWTMETLDDNGKMLYLTLEKAPQLTGLGPWMGVVQGEKQVNSD--YPEEDKAS 616
            D YSW +   ++ V V +P   KGK +V+D+T T +K+ LK +E  PI+EG L   +++D S+WT+E    + K + +TL+K+ Q+     W  VV+G  ++N+    PE  K S
Sbjct:   25 DNYSWTQQLSDLQVVVPVPPGTKGKQLVVDITQTKLKVGLKGQE--PILEGTLTKRVIVDDSFWTLE----DSKEVVVTLQKSNQMEW---WKAVVEGAPEINTQKVQPENSKLS 130

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig92.17304.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig92.17304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 24


Match Name	E-value	Identity	Description
D7FKR8_ECTSI	3.090e-291	96.88	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LB24_ECTSI	3.380e-33	37.32	OTU domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A7S1V4T9_9STRA	6.020e-33	37.63	Hypothetical protein n=1 Tax=Grammatophora oceanic...	[more]
A0A835YZQ7_9STRA	1.410e-29	35.96	OTU domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S3L1U5_9STRA	3.890e-28	34.40	Hypothetical protein n=1 Tax=Amphora coffeiformis ...	[more]
B7G567_PHATC	5.360e-28	35.23	Predicted protein n=1 Tax=Phaeodactylum tricornutu...	[more]
A0A4D9CXM6_9STRA	5.200e-21	29.90	OTU domain-containing protein n=1 Tax=Nannochlorop...	[more]
A0A1Z5JTL4_FISSO	7.670e-21	29.82	OTU domain-containing protein n=1 Tax=Fistulifera ...	[more]
A0A7S3Q5V5_9STRA	5.840e-17	31.07	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]
A0A7S2FV93_9STRA	3.600e-11	36.52	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig92	contig	E-siliculosus-1a_M_contig92:591084..596180 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	1254
Model size	1812
Exons	11
Ec32 ortholog	Ec-21_001870.1
Ec32 ortholog description	HSP20-like chaperone
Hectar predicted targeting category	chloroplast
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	S
EggNOG OGs	2BVCW@1,2S253@2759
EggNOG free text desc.	OTU-like cysteine protease
Seed eggNOG ortholog	2880.D7FKR8
Seed ortholog evalue	8.4e-232
Seed ortholog score	809.3
Taxonomic scope	Eukaryota

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622936467.8401883-UTR-E-siliculosus-1a_M_contig92:591083..591559	1622936467.8401883-UTR-E-siliculosus-1a_M_contig92:591083..591559	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig92 591084..591559 -
1696251092.2668982-UTR-E-siliculosus-1a_M_contig92:591083..591559	1696251092.2668982-UTR-E-siliculosus-1a_M_contig92:591083..591559	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig92 591084..591559 -
1622936468.0566885-UTR-E-siliculosus-1a_M_contig92:596098..596180	1622936468.0566885-UTR-E-siliculosus-1a_M_contig92:596098..596180	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig92 596099..596180 -
1696251092.412939-UTR-E-siliculosus-1a_M_contig92:596098..596180	1696251092.412939-UTR-E-siliculosus-1a_M_contig92:596098..596180	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig92 596099..596180 -

The following CDS feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig92.17304.1	prot_E-siliculosus-1a_M_contig92.17304.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	polypeptide	E-siliculosus-1a_M_contig92 591560..596098 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_M_contig92:591084..596180-
coding sequence from alignment at E-siliculosus-1a_M_contig92:591084..596180-

protein sequence of mRNA_E-siliculosus-1a_M_contig92.17304.1

>prot_E-siliculosus-1a_M_contig92.17304.1 ID=prot_E-siliculosus-1a_M_contig92.17304.1|Name=mRNA_E-siliculosus-1a_M_contig92.17304.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=418bp
MRLEALFVAFVPVSVTAFSFVSKLRPNQVSLEVRPQAMSRYRTGRTSRPR
TLRPLWMMSFGAGATDRYSWDETDKEVNVKVRLPAWAKGKSVVLDMTNTH
VKLFLKEEESTPIIEGDLRGAILMDGSYWTMETLDDNGKMLYLTLEKAPQ
LTGLGPWMGVVQGEKQVNSDYPEEDKASFFRFAAEIAAMAHEEKKAQDAE
SGAPKHTGVVDEDGFCRDLLAVQAMSGAMVARQVPVNGNALFSAVAISKW
FIESGEHPDASSPEIETIAKDLRQKTLDYLTKAYKENAPIYMSGEYMDAR
PFVAAQAKANSMADGDEYLQAMRDDTMWGGGGEVVGLTHVLKRPLHVYDL
VSTGRRFGLRVIGRFGAPLYAKERPIHIVSTYARFPDLDPGSQSAEGNHY
VALYPYEDVPEKNKGKL*

mRNA from alignment at E-siliculosus-1a_M_contig92:591084..596180-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_M_contig92.17304.1 ID=mRNA_E-siliculosus-1a_M_contig92.17304.1|Name=mRNA_E-siliculosus-1a_M_contig92.17304.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5097bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:591084..596180- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCCTCCCTCCCCTCGCTCTGCACCGCACACGCTCCGCCTTTCTCTGCTCT
CTGCCTCTGTGCTCCACGCGCACCACCGAATCATGAGGCTCGAAGCTCTG
TTCGTTGCGTTTGTGCCTGTCTCGGTCACTGCATTCTCTTTCGTGTCGAA
GTTGAGACCTAACCAAGTCTCGTTGGAGGTCAGGCCGCAGGCGATGTCGC
GATATCGGACTGGACGAACAAGTCGACCACGCACCTTGCGGCCGTTGTGG
ATGATGAGTTTTGGAGCTGGTGCAACTGATCGTTATTCATGGTGAGGAGA
TGAGGGCGGTCTGCTCGTTGGTGCGCCGTGTTGATGGACACCGCCGTACT
CGTGTGACACATCAGGCTTTATGTGTTGCTGCTGTGTAGATGGGCGTCTG
AACCGTACAAAACAAGAGGGAATACATGACACCGACCGTTGCAACGTCGC
TGAAGTTTTGGGCATGCACACAGCAGTACCTGTGAACAAAACTATACGTT
CCCACGATCCGAGCTTCGAATATAATTGCTTCCATCTCAGCATCATGAAG
ACGGCACGTTCGTGATGCTACTCTTCCGTGCTCCAGAAGTTCGGAACCCA
ACAGTATTTGCCTGTGTTTACGATCGAAATCAGTCACATACGGCTAGACA
CAGCCAAGCGAGATATGTACATAGAAGTACATGCACCCGTATATTGACAC
CACGCGCTCCGGCATCTTTGTCAGCTTATAGAACAGCCTTCATTCTCGGA
ACAAACTGCTTTCATTCACCTCTGCTTCGGTTCAGGGATGAAACGGACAA
GGAAGTGAACGTCAAGGTGCGACTACCTGCGTGGGCCAAGGGCAAGTCTG
TCGTCCTCGACATGACCAACACCCACGTGAAACTGTTTCTCAAGGAAGAG
GAGTCCACGCCCATCATTGAGGTGCGTAAGTGTTTCACCATTACGGTGGG
TCTCTAGGGTGACACCAGTGGTGCTCTTTCGAGTATTTTTGAAATAAAGA
GACACGTTGAGAGCAGGTCGCGTGCATGCACATGTGCATGGGGTTGCCCT
TGTCCGCCTGACCACCAATCCGCACAGCAGCTCTCATATTCGCGCTGGGC
CTCCCGCTACTCGCAGGGCGACTTGCGAGGAGCTATCTTGATGGACGGCA
GCTATTGGACGATGGGTGAGCGGGCAATGGCGTATGGGCTGCCACACCAT
TCATCGGCTCGCCGTGTTATTTCCGTACATTTGGTCCAAAGGCAGGAAGT
ACACGAAGTGATGCCAAGAACGTCACGAAACAGAGAGTTCGTGAGCGTTG
CTGTTTGCCAAAGGTAGAACAGCTGATAGGTCACGTTGAGATTTGTCGCC
CCCTTGACCCTGATTCATATTGCACGCCAACAGTTTTCGACACCTCGCCA
ACTGCTCGTGTCGGCAGAGACCCTCGATGACAACGGCAAGATGCTTTACC
TCACCCTGGAGAAGGCGCCGCAGCTTACTGGGTTGGGTCCTTGGATGGGT
GTTGTCCAGGGTGAGAAGCAAGTGAACTCGGACTACCCCGAAGAGGACAA
GGCAAGTTTTTTTCGTTTCGTGTGCGATTCGAAGATTTGTTTGGCAAATC
GGCACCTTTGGAGTTGCTGCGAACAGGCCTGACAAAGATGACTGTCGGTG
TCAGGGCATGAGGTGTGTCATTGGACTGCGGTACGTCGACCGACAGAGCG
ACTGGTGCAGCCTTTGGTCCGCGACAAATACTCTACTCGGTGTGACGGGG
CCTAGACGTACTGGTTTTCGTGTTTTTAATGCGTCTGAAGTCTCGCTTGG
TTGCTAGGTGGTGTTGCCTTTGTTTTGTCGAGCCACGAATGATGTCCACC
GTCGCACTTCTATAGAATGTACCATAGGTCAAGTGACTGCCTGCACCCGC
GCTGCTGATATTTCTGCGTTGGAGTCTTTCAACTCAGTTGATTGGCCTGT
TGATCTCTCTCCACCAACCCAACCAATGGCAGGCGGCGGAGATAGCTGCC
ATGGCTCACGAGGAGAAGAAGGCACAAGGTGGGGGTGGTTCGTAATACAC
GACGATTTCGACGTCGCGAATGACTATGATTGGCATCAGACTACACTCGA
CCTGAGCTAGTTGTTGTTCTTCTTGTTGTGTTGTATACAACAGCATATCG
AGATGCTTGCAGGTTTGAACAGGAGTCGGGCAAGGCGCTCCCTGTTTGAT
GCTATCGTAAGCATCTGGTTCGCACTGCTTTATTTTTCGCCCCAGATGCT
GAATCGGGCGCACCGAAACATACCGGAGTTGTGGACGAGGATGGCTTTTG
CAGAGACCTACTGGCTGTGCAGGCGATGAGTGGGGCAATGGTTGCGCGAC
AAGTAAGTGGACTGTCAAAACACCCTTTGCGCTTCATTTGTCTGAAATGC
GTTTGATTTTTAAAACAGCTGTAGTGATTGCAGAAAGTTTTTGTCTAACA
CCCTGATACTTGTATGTGCAGTGTGTATGTATAAAGGATGCACTGAGAGG
GTGTGACCCCCAAGGATGGGGCGCGTCTCAGTGCATGTTTTGACGTCGCG
CTTTCGTTGGGAGACCGCAGCGACGAGGCCTTACAAGCTGCCGATATACT
GGAAAGATTAGCGGACGCAGTCGACAACGCGTATGATGCGGGCAATTCCT
CATGGAAGAACGAGCTGGAGGTTGTAGGGAAGTGTTCCGATGTCTCCCGT
GTCAGCTATGGTACTACCACGTTGCGGCAGAAACAGTTTGTTCGAGAAGG
CTGTCAAGTATCGTCTCCTAGAGGTGACGTTAACGTTTCCTCTGGTGTCC
TGGGTTGCACCTACCCCAACAGGTACCAGTGAATGGAAATGCTCTTTTCT
CCGCGGTGGCGATCTCCAAATGGTTCATCGAAAGTGGTGAACATCCTGAT
GCCTCGTCGCCGGAGATTGAAACAATAGCAAAGGATTTGCGGCAGGTATG
AGTATTCGTCTGGTACAGCAATAGGAGGGGTTGCCGGTTATTCGATACCT
TGATGAGAGCTGCTTCAAAGATTTTCTTCCTTTCTCCGCCCTGAACTAAG
TATCTCCAGGTTTTTGCCCCTCGCGATGCCGTACAAGCGCATATCCACTC
GGTAGACTTTTAATCGATGGTTGACGAAAAGTAAATGTGTCGAGTACCCC
GCCTGAAATGGTGATTCTTACAGAATTGGTGGTACGCCAGGATACAGCCG
AAACAACAAAGCGTGTTTGCATCGCTGCATGGGGGAAGCGTGAACTCTGA
ATTATCTTCGTGCTGTCTTTGGGCCTCTTTCGCTGCCTTGCAGAAAACGT
TGGACTACCTTACAAAAGCATACAAAGAGAACGCCCCAATCTACATGTCG
GGGGAGTACATGGACGCCAGGCCGTTCGTGGCCGCTCAGGCGAAAGCTAA
CAGCATGGCCGACGGGGACGAGTACTTACAGGTGTGCTTCAGCAAGTTTT
ACGACCAGATGCGTGTCGCTACGATAGTGTCTAAGTAGCATGCGGCAGCG
TGTCGAGTCTGTACAGCACTTGGCCGTTTTTTTTCTATTCTTTTCATGTT
GTCGATGTTGCAAGTGTAACCCGTGGCATCTCTATCGGAATAATGGCCAG
CGTTGATGGTAGAATAGCATTCACACTGACGGACGAACCTTGCAGGACAC
GGAAGGGTTCATTTTACATTGTAGAGGGTTATTGGGACTCTTAATTGCAA
CGGTGCTCATCACTAGGAGTCAACTAGTCCGCACCTATGGAGCAGCAATG
TAGTGCCACTTTTCATGACGATGCGGCCAAGCCCAACTGCTGTTCGCAGG
TTTAGATCATCCCCTTGTGTGTTTCCAACCTTAGCATGCTGCGCTGTATG
GAAGAACGACCGTCGTGTGAGCACAGCCCTCATTCTGTGTGCCACCGAAC
GCTTTGCATTGTTCCGTTTCAGGCGATGCGGGATGACACTATGTGGGGAG
GAGGTGGAGAAGTCGTGGGTCTGACTCATGTGCTCAAGAGACCACTACAC
GTGTACGATCTGGTTTCAACAGGCCGACGGTGAGGGAGTTTAGCGCCCAC
TACCTTGGGTATGTGACGTTGGGTTTGAGTATTTTGCGATAGCACAACCC
TCTTGTTCCCCACCGATCGGCATAATTCCAACCGCCATGCGTTCCTTGAG
GTATCCCGAGAACGATGGCATGCTTCACGTCGACGTCTGCTCGGCTGACC
ACGGCAGAAAGTGCGTTCATGTCTGTACGTGGTCTTGGGGGCTTTTTCAT
CACCTTTACCCGCTGCTCGCCTTGGGAATGATGAATTATTCGCAGGTTTG
GCCTGAGAGTCATTGGGAGGTTCGGGGCCCCGCTGTACGCTAAAGAGAGG
CCGATCCATATCGTCAGTACGTACGCGAGGTAAGCACTCAAGAGGTGTAT
GTGCCATAATTTGGGAGCTGCTGTTGAAGGACAAACGCATGTACGTGGAA
AAATCAAAATACAATCGTATGACCTGTCTTTCGTGCCGCCAACTCCGCGC
GCTTTTTCTTCGCTGCAGATTCCCCGATCTTGACCCTGGAAGTCAGTCTG
CTGAAGGGAACCACTACGTAGCCTTGTATCCGTACGAAGACGTTCCGGAG
AAGAACAAAGGAAAGCTCTGAATCCTCAAGACTGAGCGTTTGGTTTTCGG
TTTGCAAGAATCACCACTCAAGTAGTTCCCACAGGATGGGTGAGGCCCCA
TTTGTCACGTGAATGTCATGCTTGTGTTGGCTTGTCGTGGAAAGAGCGAC
GGCACGTAGTTAACATGGGGTACCTTTCGGTATACGTGATCTAGAAGAGC
ATAGAGTAGTGACAAAGCGGTCAGGCAGGTGCGCTCGTGTTGTCCTGGTC
CTTTGCCTTGTATCTGGGCGAACAAACCTTGCGTATCCTACCTATTGTAG
CCCGATAGGAATAAGGTGTGGTCGTGCACAAAAATAATACAAGCATATTA
CACGGCTTGAAGCGCGAGTGTATGGCAAACCCACCATGTGCTGGTGTGAG
TGGCGACACCGATTCGAGGCGATGACCGTTGCTCAAGTTGGAATGCATCC
ATCCGAGAGCATTGCAGCAATACACAGCTGCTGAACGCCTGACGTGG

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:591084..596180-

>mRNA_E-siliculosus-1a_M_contig92.17304.1 ID=mRNA_E-siliculosus-1a_M_contig92.17304.1|Name=mRNA_E-siliculosus-1a_M_contig92.17304.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2508bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:591084..596180- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGGCTCGAAGCTCTGTTCGTTGCGTTTGTGCCTGTCTCGGTCACTGC
ATTCTCTTTCGTGTCGAAGTTGAGACCTAACCAAGTCTCGTTGGAGGTCA
GGCCGCAGGCGATGTCGCGATATCGGACTGGACGAACAAGTCGACCACGC
ACCTTGCGGCCGTTGTGGATGATGAGTTTTGGAGCTGGTGCAACTGATCG
TTATTCATGATGAGGCTCGAAGCTCTGTTCGTTGCGTTTGTGCCTGTCTC
GGTCACTGCATTCTCTTTCGTGTCGAAGTTGAGACCTAACCAAGTCTCGT
TGGAGGTCAGGCCGCAGGCGATGTCGCGATATCGGACTGGACGAACAAGT
CGACCACGCACCTTGCGGCCGTTGTGGATGATGAGTTTTGGAGCTGGTGC
AACTGATCGTTATTCATGGGATGAAACGGACAAGGAAGTGAACGTCAAGG
TGCGACTACCTGCGTGGGCCAAGGGCAAGTCTGTCGTCCTCGACATGACC
AACACCCACGTGAAACTGTTTCTCAAGGAAGAGGAGTCCACGCCCATCAT
TGAGGGATGAAACGGACAAGGAAGTGAACGTCAAGGTGCGACTACCTGCG
TGGGCCAAGGGCAAGTCTGTCGTCCTCGACATGACCAACACCCACGTGAA
ACTGTTTCTCAAGGAAGAGGAGTCCACGCCCATCATTGAGGGCGACTTGC
GAGGAGCTATCTTGATGGACGGCAGCTATTGGACGATGGGGCGACTTGCG
AGGAGCTATCTTGATGGACGGCAGCTATTGGACGATGGAGACCCTCGATG
ACAACGGCAAGATGCTTTACCTCACCCTGGAGAAGGCGCCGCAGCTTACT
GGGTTGGGTCCTTGGATGGGTGTTGTCCAGGGTGAGAAGCAAGTGAACTC
GGACTACCCCGAAGAGGACAAGGCAAGTTTTTTTCGTTTCAGACCCTCGA
TGACAACGGCAAGATGCTTTACCTCACCCTGGAGAAGGCGCCGCAGCTTA
CTGGGTTGGGTCCTTGGATGGGTGTTGTCCAGGGTGAGAAGCAAGTGAAC
TCGGACTACCCCGAAGAGGACAAGGCAAGTTTTTTTCGTTTCGCGGCGGA
GATAGCTGCCATGGCTCACGAGGAGAAGAAGGCACAAGGCGGCGGAGATA
GCTGCCATGGCTCACGAGGAGAAGAAGGCACAAGATGCTGAATCGGGCGC
ACCGAAACATACCGGAGTTGTGGACGAGGATGGCTTTTGCAGAGACCTAC
TGGCTGTGCAGGCGATGAGTGGGGCAATGGTTGCGCGACAAATGCTGAAT
CGGGCGCACCGAAACATACCGGAGTTGTGGACGAGGATGGCTTTTGCAGA
GACCTACTGGCTGTGCAGGCGATGAGTGGGGCAATGGTTGCGCGACAAGT
ACCAGTGAATGGAAATGCTCTTTTCTCCGCGGTGGCGATCTCCAAATGGT
TCATCGAAAGTGGTGAACATCCTGATGCCTCGTCGCCGGAGATTGAAACA
ATAGCAAAGGATTTGCGGCAGGTACCAGTGAATGGAAATGCTCTTTTCTC
CGCGGTGGCGATCTCCAAATGGTTCATCGAAAGTGGTGAACATCCTGATG
CCTCGTCGCCGGAGATTGAAACAATAGCAAAGGATTTGCGGCAGAAAACG
TTGGACTACCTTACAAAAGCATACAAAGAGAACGCCCCAATCTACATGTC
GGGGGAGTACATGGACGCCAGGCCGTTCGTGGCCGCTCAGGCGAAAGCTA
ACAGCATGGCCGACGGGGACGAGTACTTACAGAAAACGTTGGACTACCTT
ACAAAAGCATACAAAGAGAACGCCCCAATCTACATGTCGGGGGAGTACAT
GGACGCCAGGCCGTTCGTGGCCGCTCAGGCGAAAGCTAACAGCATGGCCG
ACGGGGACGAGTACTTACAGGCGATGCGGGATGACACTATGTGGGGAGGA
GGTGGAGAAGTCGTGGGTCTGACTCATGTGCTCAAGAGACCACTACACGT
GTACGATCTGGTTTCAACAGGCCGACGGCGATGCGGGATGACACTATGTG
GGGAGGAGGTGGAGAAGTCGTGGGTCTGACTCATGTGCTCAAGAGACCAC
TACACGTGTACGATCTGGTTTCAACAGGCCGACGGTTTGGCCTGAGAGTC
ATTGGGAGGTTCGGGGCCCCGCTGTACGCTAAAGAGAGGCCGATCCATAT
CGTCAGTACGTACGCGAGGTTTGGCCTGAGAGTCATTGGGAGGTTCGGGG
CCCCGCTGTACGCTAAAGAGAGGCCGATCCATATCGTCAGTACGTACGCG
AGATTCCCCGATCTTGACCCTGGAAGTCAGTCTGCTGAAGGGAACCACTA
CGTAGCCTTGTATCCGTACGAAGACGTTCCGGAGAAGAACAAAGGAAAGC
TCTGAATTCCCCGATCTTGACCCTGGAAGTCAGTCTGCTGAAGGGAACCA
CTACGTAGCCTTGTATCCGTACGAAGACGTTCCGGAGAAGAACAAAGGAA
AGCTCTGA