mRNA_E-siliculosus-1a_M_contig92.17297.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig92.17297.1
Unique NamemRNA_E-siliculosus-1a_M_contig92.17297.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig92contigE-siliculosus-1a_M_contig92:546732..547339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size399
Model size608
Exons1
Ec32 orthologEc-21_001940.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936465.8954287-CDS-E-siliculosus-1a_M_contig92:546731..5471301622936465.8954287-CDS-E-siliculosus-1a_M_contig92:546731..547130Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 546732..547130 +
1696251091.5596192-CDS-E-siliculosus-1a_M_contig92:546731..5471301696251091.5596192-CDS-E-siliculosus-1a_M_contig92:546731..547130Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 546732..547130 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936465.9176743-UTR-E-siliculosus-1a_M_contig92:547130..5473391622936465.9176743-UTR-E-siliculosus-1a_M_contig92:547130..547339Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 547131..547339 +
1696251091.5711339-UTR-E-siliculosus-1a_M_contig92:547130..5473391696251091.5711339-UTR-E-siliculosus-1a_M_contig92:547130..547339Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 547131..547339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig92.17297.1prot_E-siliculosus-1a_M_contig92.17297.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig92 546732..547130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig92.17297.1

>prot_E-siliculosus-1a_M_contig92.17297.1 ID=prot_E-siliculosus-1a_M_contig92.17297.1|Name=mRNA_E-siliculosus-1a_M_contig92.17297.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=133bp
MPDKVASPVRFAFRERSQEDSLAYTSRSTLFLVTSLRNLFFSGVARGGEG
GGIYFHFLVKFTFLRYLGTTKLSTWLFWKYVDWNPHGDYYYSVAEVACWW
GSKRFICLCKIGIRGLTPLCKTRRRNGEICDA*
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mRNA from alignment at E-siliculosus-1a_M_contig92:546732..547339+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig92.17297.1 ID=mRNA_E-siliculosus-1a_M_contig92.17297.1|Name=mRNA_E-siliculosus-1a_M_contig92.17297.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=608bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:546732..547339+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCCGATAAGGTTGCATCACCGGTCAGGTTTGCATTTCGAGAGAGGTC
CCAAGAAGACAGCCTGGCGTATACATCCCGTTCCACATTATTTTTGGTAA
CATCCCTCAGGAACCTTTTTTTTTCGGGCGTTGCGCGCGGTGGGGAGGGG
GGGGGGATTTATTTCCATTTTCTCGTCAAATTTACTTTCTTACGTTACCT
GGGTACAACGAAGTTATCTACCTGGTTATTTTGGAAGTACGTAGATTGGA
ATCCCCACGGAGATTATTATTATAGTGTCGCTGAGGTAGCTTGTTGGTGG
GGTTCGAAAAGGTTTATTTGTTTGTGCAAAATAGGAATAAGGGGATTAAC
TCCGTTGTGCAAGACACGAAGAAGGAATGGTGAGATATGCGATGCCTGAT
CTCATTGTCTGTTTTTTTTTTCGTGTGTCTCTGTTTTTTTTGTTGAGTTT
CTTGGTGTGCCTCGTCGCTGATGCTAGCATTATTCGCTCCCTCGATGCTA
CATCGGTAGCGCTTAGCATGTCATCATCACAGACACATTAGGTGCGTGCG
CGGCACCAACCTTCCTTATTCCTCTCATGCTTGGAAGCAAGAAAAACGTT
CTTCATTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:546732..547339+

>mRNA_E-siliculosus-1a_M_contig92.17297.1 ID=mRNA_E-siliculosus-1a_M_contig92.17297.1|Name=mRNA_E-siliculosus-1a_M_contig92.17297.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=798bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:546732..547339+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCCGATAAGGTTGCATCACCGGTCAGGTTTGCATTTCGAGAGAGGTC
CCAAGAAGACAGCCTGGCGTATACATCCCGTTCCACATTATTTTTGGTAA
CATCCCTCAGGAACCTTTTTTTTTCGGGCGTTGCGCGCGGTGGGGAGGGG
GGGGGGATTTATTTCCATTTTCTCGTCAAATTTACTTTCTTACGTTACCT
GGGTACAACGAAGTTATCTACCTGGTTATTTTGGAAGTACGTAGATTGGA
ATCCCCACGGAGATTATTATTATAGTGTCGCTGAGGTAGCTTGTTGGTGG
GGTTCGAAAAGGTTTATTTGTTTGTGCAAAATAGGAATAAGGGGATTAAC
TCCGTTGTGCAAGACACGAAGAAGGAATGGTGAGATATGCGATGCCTGAA
TGCCCGATAAGGTTGCATCACCGGTCAGGTTTGCATTTCGAGAGAGGTCC
CAAGAAGACAGCCTGGCGTATACATCCCGTTCCACATTATTTTTGGTAAC
ATCCCTCAGGAACCTTTTTTTTTCGGGCGTTGCGCGCGGTGGGGAGGGGG
GGGGGATTTATTTCCATTTTCTCGTCAAATTTACTTTCTTACGTTACCTG
GGTACAACGAAGTTATCTACCTGGTTATTTTGGAAGTACGTAGATTGGAA
TCCCCACGGAGATTATTATTATAGTGTCGCTGAGGTAGCTTGTTGGTGGG
GTTCGAAAAGGTTTATTTGTTTGTGCAAAATAGGAATAAGGGGATTAACT
CCGTTGTGCAAGACACGAAGAAGGAATGGTGAGATATGCGATGCCTGA
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