mRNA_E-siliculosus-1a_M_contig92.17269.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig92.17269.1
Unique NamemRNA_E-siliculosus-1a_M_contig92.17269.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17269.1 vs. uniprot
Match: A0A6H5JXH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH9_9PHAE)

HSP 1 Score: 393 bits (1010), Expect = 6.180e-131
Identity = 215/247 (87.04%), Postives = 218/247 (88.26%), Query Frame = 1 
Query:  100 MLHLGKFFRGTVPLLACLCVACTAFIPVPMRFPSRGQQAARSARPSTTIAGPGSPTQQATTPTAGTRRRPISVSCCGEGAGGEGVEVAVDSAAAPGGAAAAA---AEVDPFRPTRASMSPLVINALVSVLFKPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRSMLATAVERTPSIAKYGMFSDYGMSENVENDPLAQMNQAECLLALYILHKENAGGAAVDFLDAERLDVLQG 831
            MLHLG FFRGTVPLLACLCVACTAFIPVP RFPSRGQQ A SARPSTTIAGPGSPTQQATTPTAGTRRRPISV CCGEGAGGE                      AE+DPFRPTRASMSPLVINALVSVLF+PDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELR MLATAVERTPSIAKYGMFSDYGMS+NVENDPLAQMNQAECLLALYILHKENAG AAVDFLDAERLDVLQG
Sbjct:    1 MLHLGLFFRGTVPLLACLCVACTAFIPVPTRFPSRGQQVASSARPSTTIAGPGSPTQQATTPTAGTRRRPISVPCCGEGAGGEXXXXXXXXXXXXXXXXXXXXXXAEMDPFRPTRASMSPLVINALVSVLFRPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIAKYGMFSDYGMSKNVENDPLAQMNQAECLLALYILHKENAGVAAVDFLDAERLDVLQG 247
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17269.1 vs. uniprot
Match: D7FRB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB2_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 1.430e-75
Identity = 128/130 (98.46%), Postives = 128/130 (98.46%), Query Frame = 1 
Query:  442 MSPLVINALVSVLFKPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRSMLATAVERTPSIAKYGMFSDYGMSENVENDPLAQMNQAECLLALYILHKENAGGAAVDFLDAERLDVLQG 831
            MSPLVINALVSVLFKPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELR MLATAVERTPSIAKYGMFSDYGMSENVENDPLAQMNQAECLLALYILHKENAGGAAVDFLDAERLDVL G
Sbjct:    1 MSPLVINALVSVLFKPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIAKYGMFSDYGMSENVENDPLAQMNQAECLLALYILHKENAGGAAVDFLDAERLDVLAG 130
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17269.1 vs. uniprot
Match: A0A835ZBX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX3_9STRA)

HSP 1 Score: 135 bits (339), Expect = 4.040e-33
Identity = 80/139 (57.55%), Postives = 97/139 (69.78%), Query Frame = 1 
Query:  415 DPFRPTRASMSPLVINALVSVLFKPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRSMLATAVERTPSIAKYGMFSDYGMSENVENDPLAQMNQAECLLALYILHKENAGGAAVDFLDAERLDVLQG 831
            DPFRP +AS+ PLVINAL  VLFK D  A  A +A L+ R D   T EE+  V SRV GV     ELR  LA+AV R   IAKYGM  DYG+SE++E++PLAQ+N AECLLALY+LH+E  G     F+DAE+LDVL+G
Sbjct:   42 DPFRPAKASIDPLVINALQRVLFK-DEPADAAVSALLQSRDD-ALTPEEDALVRSRVHGVVHSAQELRFTLASAVSRHAFIAKYGMQGDYGVSEDLESNPLAQLNHAECLLALYMLHREGRGEEPA-FVDAEKLDVLRG 177
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JXH9_9PHAE6.180e-13187.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRB2_ECTSI1.430e-7598.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZBX3_9STRA4.040e-3357.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig92contigE-siliculosus-1a_M_contig92:207218..210459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size735
Model size1894
Exons3
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2EWVJ@1,2SYMA@2759
Seed eggNOG ortholog2880.D7FRB2
Seed ortholog evalue6.8e-64
Seed ortholog score250.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig92.17269.1prot_E-siliculosus-1a_M_contig92.17269.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig92 208278..210360 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936459.1574576-UTR-E-siliculosus-1a_M_contig92:207217..2082771622936459.1574576-UTR-E-siliculosus-1a_M_contig92:207217..208277Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 207218..208277 -
1696251088.657944-UTR-E-siliculosus-1a_M_contig92:207217..2082771696251088.657944-UTR-E-siliculosus-1a_M_contig92:207217..208277Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 207218..208277 -
1622936459.2187312-UTR-E-siliculosus-1a_M_contig92:210360..2104591622936459.2187312-UTR-E-siliculosus-1a_M_contig92:210360..210459Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 210361..210459 -
1696251088.7090585-UTR-E-siliculosus-1a_M_contig92:210360..2104591696251088.7090585-UTR-E-siliculosus-1a_M_contig92:210360..210459Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 210361..210459 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936459.1712081-CDS-E-siliculosus-1a_M_contig92:208277..2084671622936459.1712081-CDS-E-siliculosus-1a_M_contig92:208277..208467Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 208278..208467 -
1696251088.670658-CDS-E-siliculosus-1a_M_contig92:208277..2084671696251088.670658-CDS-E-siliculosus-1a_M_contig92:208277..208467Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 208278..208467 -
1622936459.1902409-CDS-E-siliculosus-1a_M_contig92:209064..2092191622936459.1902409-CDS-E-siliculosus-1a_M_contig92:209064..209219Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 209065..209219 -
1696251088.6884294-CDS-E-siliculosus-1a_M_contig92:209064..2092191696251088.6884294-CDS-E-siliculosus-1a_M_contig92:209064..209219Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 209065..209219 -
1622936459.203361-CDS-E-siliculosus-1a_M_contig92:209970..2103601622936459.203361-CDS-E-siliculosus-1a_M_contig92:209970..210360Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 209971..210360 -
1696251088.6998937-CDS-E-siliculosus-1a_M_contig92:209970..2103601696251088.6998937-CDS-E-siliculosus-1a_M_contig92:209970..210360Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 209971..210360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig92.17269.1

>prot_E-siliculosus-1a_M_contig92.17269.1 ID=prot_E-siliculosus-1a_M_contig92.17269.1|Name=mRNA_E-siliculosus-1a_M_contig92.17269.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=245bp
MLHLGKFFRGTVPLLACLCVACTAFIPVPMRFPSRGQQAARSARPSTTIA
GPGSPTQQATTPTAGTRRRPISVSCCGEGAGGEGVEVAVDSAAAPGGAAA
AAAEVDPFRPTRASMSPLVINALVSVLFKPDTEATGAAAAALERRSDWEF
TEEEERAVTSRVCGVASHLTELRSMLATAVERTPSIAKYGMFSDYGMSEN
VENDPLAQMNQAECLLALYILHKENAGGAAVDFLDAERLDVLQG*
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mRNA from alignment at E-siliculosus-1a_M_contig92:207218..210459-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig92.17269.1 ID=mRNA_E-siliculosus-1a_M_contig92.17269.1|Name=mRNA_E-siliculosus-1a_M_contig92.17269.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3242bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:207218..210459- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTGGGCCGGCGTTGTGCAAACATCCCCATTGCATTGGCCCAGTTCAGTGT
AGCTGCAGCACTACACGCCACCAAACACCACGCTCTCCTCTCCGCCACCA
TGCTTCACCTGGGTAAATTTTTCCGGGGTACCGTCCCCTTGCTCGCGTGC
TTATGTGTGGCCTGCACCGCCTTTATTCCCGTGCCGATGAGATTCCCTTC
TCGAGGACAACAGGCCGCTAGGTCAGCACGCCCATCGACCACCATAGCTG
GACCAGGCTCGCCAACACAGCAGGCAACAACGCCGACAGCAGGCACACGA
CGACGACCAATATCAGTTTCATGTTGCGGCGAGGGTGCAGGAGGCGAAGG
CGTTGAAGTTGCAGTTGACAGTGCTGCCGCACCTGGTGGTGCTGCTGCTG
CCGCCGCCGAGGTGGACCCTTTTCGTCCAACGAGGGCGTCCATGTCTCCG
TTGGTCATCAACGCCTTGGTGTCGGTGCTGTTCAAGCCGGTGAGGAGTTA
TGACTGCACTGTGCGCGATCCATAAGAACTACGGTTGTTTAAAGTCCGCT
ACTGCTGAACCTGTACCCGGCGTTGGTGGTGGCGATCTGATCTTCTGCAA
CGGCCACTCCTGGGGGGCGCGCTATCGTGGTTCAACGCGTTTCCCACGCG
TCAATGCATGCATGCAGGCGCAAGGCCAGTTCAACGGATCATGTCGATGG
ACTTTATATGCGCGCGCGATGGTTGGTCTAGTTCTGCGCGGCCTGCATTA
CTCCGTGCAGCTCTGCACTTCTAGCAGACACCAGGCATCTCGTCTACAGA
AAAGTCCAAGCCGTGTACCACACGGGTACTGCTGTGGCTGGTGTTCCGAT
AGCGCAACCTGAATAGCGGAGCTGCCGGTCATGGAGGTGCAACAATCGCT
GTTCACCGTTTCAACCCGATTGAGCGGCAATCTGCCACTATCGAGGTCGC
TATTGAGGCCGCCGTCCTCAATACTGTAGCAGCTACTGCTGGGTGTTCTC
GCGTCACGAACAACGACGATCCCAACCTCCCAACCATCAAGTGGCGGAAC
CTCCACCTCCTCCGTCCCTTGTCTACCCCCACACATGCACCCACGCGATA
CCTGCGTGGGAGACCCGCCACTCAACAGACCACCTGCTCAATCAATAGCT
ATATCGGGCTGCACCCACTGTACCGTAATGGTTTTATGGTTCTGCCCGTG
AGCATCACACTTGTCGACTCTTTGCTCATTGACCAACCAGGATACAGAGG
CCACCGGGGCGGCCGCCGCTGCACTGGAGCGGCGCAGTGATTGGGAATTC
ACTGAGGAGGAGGAAAGGGCCGTCACCAGCAGGGTGTGCGGCGTGGCAAG
CCATTTGACCGAGCTTCGTTCTATGCTCGCCACTGCAGTGGAACGGTGAG
TGTCCGAGGGCATTTTTCGCTACATAGACGCATACGGAGCGACCTCGAAT
AGGGACTTGCCGCGACAGGTGCAACTACAGCAGTACAATAGCTTCCGATA
GGTGTAGCAGTTGCATGTGGTTTAAGCCTTCGCTTACCATGTGGAACAAT
CAACTGAAGTTGACCTGTTCCGGGCTCATGCGGAGTAAGAAGGTCTTCGG
CTGCATCCTTTACGGAGAATCATACTCACAGGTCAAGTGAATGCAAATCC
GTGGTCACGAAAAGGACTTGGAGGTACGCTCTCAGCCCCATCCAATAATT
CCCCGTATGCAAGCATATCATTTTGAGCTTGCTGCCTTGCAGCTTTGTTC
TCGCCCCTCCCTTTATGCCTGACCAGCCCCTTCACAATTGCCGGAAACAG
TGATGCAATCAGCTGCCTGCCTCCGCTGAACTCTTCACCCTCAATCCCCC
ACGAACGCGCGCTGTGTGTCCCTTCTTTTATGGCTTGCTTGTTGGCATCA
TCGCGACGCGGACGACTGTCTCGGCACTCAAACCTGTTGGCGCATCTACC
TTCCCCGCTTGCTGGATTGGGTTGGGGGTCACACCCGCCCAGAACTCCGT
CGATCGCAAAGTACGGCATGTTCTCGGACTATGGCATGAGCGAAAACGTA
GAGAACGACCCCTTGGCTCAAATGAACCAGGCCGAGTGTCTACTGGCGCT
GTATATTTTGCACAAGGAGAATGCTGGGGGCGCGGCGGTCGATTTTTTGG
ACGCCGAAAGGCTGGATGTTTTGCAGGGCTAGACAAACTGGAGTCTACAC
ATGGTTTGACTCTTGTTCGTACTGTTGATTTAGGGTATGATGCTCTAGCA
ATTTTTGTCTCTCGAGATCGGAGTTTGGGGTCGAGGGTCGTGCAGTGTTG
TTTTTGGCAGTACGCCTATCGGTAAATACTGGAAAGGCCAGTCAGTTTGG
TCGCCGCGAGGAAGGCGAACAATTTTTGCGATTCATGTCAGGAAATATTC
CATTAAAGAAAGACTACCCGTTCGAGATAAAGCCACAGTCGAACGGGGTC
TTCTAGTCTTGTGTGTAATCTGGCGATTTTGTTCTCTTCGGCGATGTACG
CTGCGTTGGTTTTTAAGGACCCGTTGTATCTAATTTCCCTGTGATTGTTC
GAGGTGCTCTTTTTGGATACCGCTGTACAATATAGGTGCGTAAAAACAAT
GTTACACCTACGTACTTTTTCATAGTTTTTTGGAGATGTTGGGGCGGGTC
TGGTTGTCTAATTCCTTTATAAAGCATACGGGCCCCGCGGAGAGGGGCCT
TGTTTTCGTCGGGGTAACCTATTCGCGAGCTAGGATCCTCTCTTGTGAAC
CCCGAAGCCATAGTCACGCAAAACGGGTACGTGCGCACAACGAGAGAGCA
CCTACCCCGCTCAAAGTATGCGTGAAACATCACCACTAGTAACGTAGTTA
CGCACGATGTTTCTCCATTGTGAATCTTGCATAGAGTGAGTGGGCTCTAA
ACTCCAAGGAAAGCAAATAGTGAAAAACCTACCGGTGAATGTGGGATGGA
TTTTGACGGACATACCAAGTTCGGTCTGTGATCACGGGAGACGTCTGCAT
CAGTTGAATCAGTACGGATGCTGGAGGGTACTGGGCGGAGATCGGAAATA
TTTTTATTCTGAAAACAACAATGCTGTGGTACTTGGCCAGCTTGGGTGTC
GTTTTACTGCAGCGACTATGCGTATCGCCTTTGAATGGTTTGGCTTCAAA
CTACGAGTCATGGAGGATCTCACTGCTGTGCAAATGTTGATGGTTACTGA
TTCCCGCCCAATCCCGTGCGCTCATGGCTGGTGGCTGATGAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:207218..210459-

>mRNA_E-siliculosus-1a_M_contig92.17269.1 ID=mRNA_E-siliculosus-1a_M_contig92.17269.1|Name=mRNA_E-siliculosus-1a_M_contig92.17269.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1470bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:207218..210459- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTTCACCTGGGTAAATTTTTCCGGGGTACCGTCCCCTTGCTCGCGTG
CTTATGTGTGGCCTGCACCGCCTTTATTCCCGTGCCGATGAGATTCCCTT
CTCGAGGACAACAGGCCGCTAGGTCAGCACGCCCATCGACCACCATAGCT
GGACCAGGCTCGCCAACACAGCAGGCAACAACGCCGACAGCAGGCACACG
ACGACGACCAATATCAGTTTCATGTTGCGGCGAGGGTGCAGGAGGCGAAG
GCGTTGAAGTTGCAGTTGACAGTGCTGCCGCACCTGGTGGTGCTGCTGCT
GCCGCCGCCGAGGTGGACCCTTTTCGTCCAACGAGGGCGTCCATGTCTCC
GTTGGTCATCAACGCCTTGGTGTCGGTGCTGTTCAAGCCGATGCTTCACC
TGGGTAAATTTTTCCGGGGTACCGTCCCCTTGCTCGCGTGCTTATGTGTG
GCCTGCACCGCCTTTATTCCCGTGCCGATGAGATTCCCTTCTCGAGGACA
ACAGGCCGCTAGGTCAGCACGCCCATCGACCACCATAGCTGGACCAGGCT
CGCCAACACAGCAGGCAACAACGCCGACAGCAGGCACACGACGACGACCA
ATATCAGTTTCATGTTGCGGCGAGGGTGCAGGAGGCGAAGGCGTTGAAGT
TGCAGTTGACAGTGCTGCCGCACCTGGTGGTGCTGCTGCTGCCGCCGCCG
AGGTGGACCCTTTTCGTCCAACGAGGGCGTCCATGTCTCCGTTGGTCATC
AACGCCTTGGTGTCGGTGCTGTTCAAGCCGGATACAGAGGCCACCGGGGC
GGCCGCCGCTGCACTGGAGCGGCGCAGTGATTGGGAATTCACTGAGGAGG
AGGAAAGGGCCGTCACCAGCAGGGTGTGCGGCGTGGCAAGCCATTTGACC
GAGCTTCGTTCTATGCTCGCCACTGCAGTGGAACGGATACAGAGGCCACC
GGGGCGGCCGCCGCTGCACTGGAGCGGCGCAGTGATTGGGAATTCACTGA
GGAGGAGGAAAGGGCCGTCACCAGCAGGGTGTGCGGCGTGGCAAGCCATT
TGACCGAGCTTCGTTCTATGCTCGCCACTGCAGTGGAACGAACTCCGTCG
ATCGCAAAGTACGGCATGTTCTCGGACTATGGCATGAGCGAAAACGTAGA
GAACGACCCCTTGGCTCAAATGAACCAGGCCGAGTGTCTACTGGCGCTGT
ATATTTTGCACAAGGAGAATGCTGGGGGCGCGGCGGTCGATTTTTTGGAC
GCCGAAAGGCTGGATGTTTTGCAGGGCTAGAACTCCGTCGATCGCAAAGT
ACGGCATGTTCTCGGACTATGGCATGAGCGAAAACGTAGAGAACGACCCC
TTGGCTCAAATGAACCAGGCCGAGTGTCTACTGGCGCTGTATATTTTGCA
CAAGGAGAATGCTGGGGGCGCGGCGGTCGATTTTTTGGACGCCGAAAGGC
TGGATGTTTTGCAGGGCTAG
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