prot_E-siliculosus-1a_M_contig92.17308.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig92.17308.1
Unique Nameprot_E-siliculosus-1a_M_contig92.17308.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length547
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17308.1 vs. uniprot
Match: D7FKR4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKR4_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 4.410e-30
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 0 
Query:  478 RLSRRVEVLQSIGVQINFTDHLWLVSSATTLRFNRWVEKVLMHDVGAIRRGDAEVERRMKSCRAMLRGT 546
            RLSRRVEVLQS+GVQINFTDH+WLVSSATTLRFN+WVEKVLMHDVGA+ RGDAEVERRMKSCRAMLRGT
Sbjct:  347 RLSRRVEVLQSLGVQINFTDHVWLVSSATTLRFNKWVEKVLMHDVGAVHRGDAEVERRMKSCRAMLRGT 415
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17308.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKR4_ECTSI4.410e-3092.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 403..423
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 192..418
coord: 275..489
coord: 91..369
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 242..273
e-value: 0.0065
score: 25.7
coord: 389..420
e-value: 4.3E-4
score: 29.6
coord: 425..456
e-value: 0.089
score: 21.9
coord: 316..348
e-value: 0.014
score: 24.6
coord: 133..164
e-value: 3100.0
score: 0.1
coord: 205..237
e-value: 2.0E-4
score: 30.7
coord: 279..311
e-value: 0.033
score: 23.3
coord: 169..200
e-value: 0.027
score: 23.6
coord: 353..384
e-value: 0.13
score: 21.3
coord: 461..492
e-value: 0.031
score: 23.4
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 124..268
e-value: 5.9E-17
score: 61.6
coord: 197..492
e-value: 4.4E-46
score: 157.2
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 81..232
e-value: 6.6E-21
score: 76.7
coord: 345..511
e-value: 7.2E-32
score: 112.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig92contigE-siliculosus-1a_M_contig92:616592..621985 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig92.17308.1mRNA_E-siliculosus-1a_M_contig92.17308.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig92 616411..621985 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig92.17308.1 ID=prot_E-siliculosus-1a_M_contig92.17308.1|Name=mRNA_E-siliculosus-1a_M_contig92.17308.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=547bp
MHVAWVLAGLAPQHTIFWQASQKHTSTLGSRPSQQYHRGKSMEPRHLPRV
PDFFGPRRRSRLSTSTDDSEAEDAELVHMDKLRDKMNSLGVGLSPSEASH
LLATNASIVDGDFSTSAIGLLSRTLGLSPREMVEIVAGRPAIAKSPVDTL
ERQLGFYLDVVKLSKQDLKTLVIKDPTILRLSLSNLREKMRFFTEDLGFR
RLQVAKVILQTPHILGSSVENKMRPNVAYLEGALGVPRRDIRRYIVALPN
LLSYSVEENLRPKVEWLEARLFLGQDQLRKLLRKRPQVWSLSVENNLNPK
IRWLEETVGVNDVALRDMVLKNPSLLLYNIDTGIKDKMSFFSSELGVEEA
QVMKILVRSPMLLSYSLESMRRKVSYFEEGLQLGANDVSSLISRCPQVLG
YSIDRIESKLTFLMQALNASREEVTSIALRYPQVLNLSVTNLRGKVNFYT
QEIGGSIEEVRAVIIGSPSLLGYSLTNRLSRRVEVLQSIGVQINFTDHLW
LVSSATTLRFNRWVEKVLMHDVGAIRRGDAEVERRMKSCRAMLRGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038538MTERF_sf
IPR003690MTERF