mRNA_E-siliculosus-1a_M_contig91.17193.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig91.17193.1
Unique NamemRNA_E-siliculosus-1a_M_contig91.17193.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17193.1 vs. uniprot
Match: D7FNU5_ECTSI (Elongin-C n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU5_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 3.170e-56
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:  220 QEFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 504
            QEFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC
Sbjct:    6 QEFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 100
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17193.1 vs. uniprot
Match: A0A6U1KLA4_9STRA (Elongin-C n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1KLA4_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.220e-35
Identity = 69/94 (73.40%), Postives = 79/94 (84.04%), Query Frame = 1 
Query:  223 EFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 504
            ++VKL+SAEG EF+VDR+CA  SGTIKAMLSG F E+ SG++ F EISTPILEKVIQ+ YYK  Y NS  RIPEF IEPE+ALELLMAANFLDC
Sbjct:   26 QYVKLISAEGHEFFVDRQCAQTSGTIKAMLSGSFTES-SGEIKFPEISTPILEKVIQYFYYKASYKNSQVRIPEFAIEPEVALELLMAANFLDC 118
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17193.1 vs. uniprot
Match: A0A1V9Z8H2_9STRA (Elongin-C n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z8H2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.970e-35
Identity = 68/94 (72.34%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:  223 EFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 504
            E+VKL+SAEG EF+V RKCA+VSGTIKAMLSG F E+  G+V F +IS PILEKVIQ++YYK RY+NS  RIP+F IEPE+ALELLMAAN+LDC
Sbjct:    9 EYVKLISAEGHEFFVARKCALVSGTIKAMLSGHFSES-KGEVRFPDISAPILEKVIQYMYYKKRYSNSNARIPDFGIEPEMALELLMAANYLDC 101
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17193.1 vs. uniprot
Match: A0A7S2XYA0_9STRA (Elongin-C n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYA0_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.230e-35
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:  214 PLQEFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 504
            P    VKLVS+EG EF+ DR+CAMVSGTI AMLSG F E+  G+V F EIS+ ILEK+IQ+ YYKVRYTNS +RIP+F IEPE+ALELLMAANFLDC
Sbjct:   10 PKSRMVKLVSSEGHEFYCDRRCAMVSGTINAMLSGQFAESR-GEVTFPEISSAILEKIIQYCYYKVRYTNSTSRIPDFPIEPEIALELLMAANFLDC 105
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17193.1 vs. uniprot
Match: A0A6G0WB49_9STRA (Elongin-C n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WB49_9STRA)

HSP 1 Score: 135 bits (340), Expect = 7.890e-35
Identity = 65/94 (69.15%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:  223 EFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 504
            ++VKL+SAEG EF+V RKCAMVSGTIKAML+G F E+  G+V F +IS PILEK+IQ+ Y+KVRY+NS  R+P+F IEPE+ALELLMAAN+LDC
Sbjct:   11 DYVKLISAEGQEFYVARKCAMVSGTIKAMLTGHFSES-KGEVRFPDISAPILEKIIQYFYFKVRYSNSNARLPDFTIEPEIALELLMAANYLDC 103
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17193.1 vs. uniprot
Match: A0A1W0A8X8_9STRA (Elongin-C n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8X8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.620e-34
Identity = 66/94 (70.21%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:  223 EFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 504
            E+VKLVSAEG EF+V RKCA+VSGTIKAML G F E+  G++ F +IS PILEKVIQ++YYK RY+NS  RIPEF+IEPE++LELLMAAN+L+C
Sbjct:   13 EYVKLVSAEGHEFYVARKCALVSGTIKAMLLGQFSES-KGEIRFPDISAPILEKVIQYLYYKKRYSNSNARIPEFNIEPEMSLELLMAANYLEC 105
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17193.1 vs. uniprot
Match: L8GYQ9_ACACA (Elongin-C n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYQ9_ACACA)

HSP 1 Score: 134 bits (337), Expect = 2.130e-34
Identity = 70/93 (75.27%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:  229 VKLVSAEGAEFWVDRKCAMVSGTIKAMLSGG--FGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLD 501
            VKL+SA+G EF VDRK AMVSGTIK+MLSG   F E A G+++F EISTPILEKVIQ+ YYK+RYTNS T IPEF IEPE+ALELLMAANFLD
Sbjct:   10 VKLISADGHEFVVDRKAAMVSGTIKSMLSGPGTFTEQAMGEINFREISTPILEKVIQYFYYKLRYTNSTTEIPEFPIEPEVALELLMAANFLD 102
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17193.1 vs. uniprot
Match: F0YER3_AURAN (Elongin-C (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YER3_AURAN)

HSP 1 Score: 133 bits (335), Expect = 2.960e-34
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:  241 SAEGAEFWVDRKCAMVSGTIKAMLSGGFGEA----ASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 504
            SAEG EFWVDRKCA  SGTIKAMLSG  G      +SG++ F EISTPILEKVIQ+ YYK+RYTNS  RIPEF I+PE+ALELLMA+NFLDC
Sbjct:    1 SAEGHEFWVDRKCANTSGTIKAMLSGPRGPRQFTESSGEIKFPEISTPILEKVIQYFYYKLRYTNSQVRIPEFQIDPEMALELLMASNFLDC 92
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17193.1 vs. uniprot
Match: K8Z122_NANGC (Elongin-C n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z122_NANGC)

HSP 1 Score: 133 bits (334), Expect = 5.090e-34
Identity = 65/94 (69.15%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:  223 EFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 504
            ++VKL+SAEG EF VDRKCA VS TI+AML+G F E+  G+++F EIST ILEKVIQ++YYKVRYTNS  ++P+F +EPE+ALELLMAANFLDC
Sbjct:    7 KYVKLISAEGHEFIVDRKCACVSKTIEAMLAGNFAES-KGEINFPEISTNILEKVIQYLYYKVRYTNSPQKVPDFKMEPEIALELLMAANFLDC 99
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17193.1 vs. uniprot
Match: A0A485K8T6_9STRA (Elongin-C n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K8T6_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.280e-33
Identity = 63/94 (67.02%), Postives = 79/94 (84.04%), Query Frame = 1 
Query:  223 EFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 504
            E+VKL+SAEG EF++ RKCAMVSGTIKAML+G F E+  G++ F +I   +LEKVIQ++YYK RY+NS  RIP+F IEPE+ALELLMAAN+LDC
Sbjct:   13 EYVKLISAEGHEFYIARKCAMVSGTIKAMLTGHFSES-KGEIRFPDIGASVLEKVIQYMYYKKRYSNSNARIPDFAIEPEIALELLMAANYLDC 105
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNU5_ECTSI3.170e-56100.00Elongin-C n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN... [more]
A0A6U1KLA4_9STRA1.220e-3573.40Elongin-C n=1 Tax=Pelagomonas calceolata TaxID=356... [more]
A0A1V9Z8H2_9STRA1.970e-3572.34Elongin-C n=3 Tax=Saprolegniaceae TaxID=4764 RepID... [more]
A0A7S2XYA0_9STRA2.230e-3571.13Elongin-C n=1 Tax=Fibrocapsa japonica TaxID=94617 ... [more]
A0A6G0WB49_9STRA7.890e-3569.15Elongin-C n=1 Tax=Aphanomyces euteiches TaxID=1008... [more]
A0A1W0A8X8_9STRA1.620e-3470.21Elongin-C n=1 Tax=Thraustotheca clavata TaxID=7455... [more]
L8GYQ9_ACACA2.130e-3475.27Elongin-C n=1 Tax=Acanthamoeba castellanii str. Ne... [more]
F0YER3_AURAN2.960e-3472.83Elongin-C (Fragment) n=1 Tax=Aureococcus anophagef... [more]
K8Z122_NANGC5.090e-3469.15Elongin-C n=2 Tax=Monodopsidaceae TaxID=425072 Rep... [more]
A0A485K8T6_9STRA2.280e-3367.02Elongin-C n=1 Tax=Aphanomyces stellatus TaxID=1203... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig91contigE-siliculosus-1a_M_contig91:116869..120123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size456
Model size1486
Exons5
Ec32 orthologEc-12_003330.1
Ec32 ortholog descriptionRNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko03400,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.I
EggNOG OGsKOG3473@1,KOG3473@2759
EggNOG free text desc.positive regulation of transcription elongation from RNA polymerase II promoter
GOsGO:0000003,GO:0000151,GO:0000153,GO:0000280,GO:0000578,GO:0000819,GO:0001666,GO:0002009,GO:0002165,GO:0003002,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005705,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006464,GO:0006725,GO:0006807,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007059,GO:0007135,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0007444,GO:0007472,GO:0007474,GO:0007476,GO:0007552,GO:0007560,GO:0008023,GO:0008150,GO:0008152,GO:0008595,GO:0009058,GO:0009059,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009798,GO:0009880,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009948,GO:0009952,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0016043,GO:0016070,GO:0016344,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019904,GO:0022402,GO:0022414,GO:0030891,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031461,GO:0031462,GO:0031463,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033554,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035282,GO:0035295,GO:0036211,GO:0036293,GO:0036294,GO:0040020,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043618,GO:0043620,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045132,GO:0045144,GO:0045787,GO:0045836,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048285,GO:0048513,GO:0048518,GO:0048522,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051276,GO:0051303,GO:0051305,GO:0051321,GO:0051445,GO:0051446,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0051726,GO:0051759,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060429,GO:0060562,GO:0061418,GO:0061983,GO:0065007,GO:0070013,GO:0070192,GO:0070449,GO:0070482,GO:0070887,GO:0070911,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:0097659,GO:0098687,GO:0098813,GO:0140013,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901987,GO:1901989,GO:1901993,GO:1901995,GO:1902099,GO:1902101,GO:1902102,GO:1902104,GO:1902494,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:1905132,GO:1905134,GO:1905818,GO:1905820,GO:1990234,GO:2000112,GO:2000241,GO:2000243,GO:2001141
KEGG ModuleM00383,M00388
KEGG Pathwayko04066,ko04120,ko05200,ko05211,map04066,map04120,map05200,map05211
KEGG koko:K03872
Preferred nameTCEB1
Seed eggNOG ortholog2880.D7FNU5
Seed ortholog evalue3e-46
Seed ortholog score191.4
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936439.4990501-UTR-E-siliculosus-1a_M_contig91:116868..1169191622936439.4990501-UTR-E-siliculosus-1a_M_contig91:116868..116919Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 116869..116919 +
1696251079.2035282-UTR-E-siliculosus-1a_M_contig91:116868..1169191696251079.2035282-UTR-E-siliculosus-1a_M_contig91:116868..116919Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 116869..116919 +
1622936439.6522675-UTR-E-siliculosus-1a_M_contig91:119144..1201231622936439.6522675-UTR-E-siliculosus-1a_M_contig91:119144..120123Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 119145..120123 +
1696251079.2802815-UTR-E-siliculosus-1a_M_contig91:119144..1201231696251079.2802815-UTR-E-siliculosus-1a_M_contig91:119144..120123Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 119145..120123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936439.5495732-CDS-E-siliculosus-1a_M_contig91:116919..1169371622936439.5495732-CDS-E-siliculosus-1a_M_contig91:116919..116937Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 116920..116937 +
1696251079.2155573-CDS-E-siliculosus-1a_M_contig91:116919..1169371696251079.2155573-CDS-E-siliculosus-1a_M_contig91:116919..116937Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 116920..116937 +
1622936439.5632231-CDS-E-siliculosus-1a_M_contig91:117178..1173311622936439.5632231-CDS-E-siliculosus-1a_M_contig91:117178..117331Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 117179..117331 +
1696251079.2268176-CDS-E-siliculosus-1a_M_contig91:117178..1173311696251079.2268176-CDS-E-siliculosus-1a_M_contig91:117178..117331Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 117179..117331 +
1622936439.5759227-CDS-E-siliculosus-1a_M_contig91:118068..1181621622936439.5759227-CDS-E-siliculosus-1a_M_contig91:118068..118162Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 118069..118162 +
1696251079.2438443-CDS-E-siliculosus-1a_M_contig91:118068..1181621696251079.2438443-CDS-E-siliculosus-1a_M_contig91:118068..118162Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 118069..118162 +
1622936439.6191401-CDS-E-siliculosus-1a_M_contig91:118447..1185391622936439.6191401-CDS-E-siliculosus-1a_M_contig91:118447..118539Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 118448..118539 +
1696251079.2550154-CDS-E-siliculosus-1a_M_contig91:118447..1185391696251079.2550154-CDS-E-siliculosus-1a_M_contig91:118447..118539Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 118448..118539 +
1622936439.6356752-CDS-E-siliculosus-1a_M_contig91:119045..1191441622936439.6356752-CDS-E-siliculosus-1a_M_contig91:119045..119144Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 119046..119144 +
1696251079.2661214-CDS-E-siliculosus-1a_M_contig91:119045..1191441696251079.2661214-CDS-E-siliculosus-1a_M_contig91:119045..119144Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 119046..119144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig91.17193.1prot_E-siliculosus-1a_M_contig91.17193.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig91 116920..119144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig91.17193.1

>prot_E-siliculosus-1a_M_contig91.17193.1 ID=prot_E-siliculosus-1a_M_contig91.17193.1|Name=mRNA_E-siliculosus-1a_M_contig91.17193.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=152bp
MATEDQSVLASVNLQLHVLLGRCPFGPVPSKQEHHICKNSTVTGYTPHPN
VLRFPLQEFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVH
FAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLD
C*
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mRNA from alignment at E-siliculosus-1a_M_contig91:116869..120123+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig91.17193.1 ID=mRNA_E-siliculosus-1a_M_contig91.17193.1|Name=mRNA_E-siliculosus-1a_M_contig91.17193.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3255bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:116869..120123+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCTTGTAGCACGGCGCACACAGCAGGCAGCGCACAGCTCCCTTTATCTAC
CATGGCTACGGAGGATCAGGTGTGCGTTGAAACAATGGGCAGAGGGTCAG
TCGCTTATTCGTCGTAGAGAGTGAGGTGCTTCGTGCCAGTCACAGAGAAA
AACAACTGCGGATTGGCGTATGTGTCCCGCCCGTAACTGGTTGCTATGCA
TACGAAGTGCTAGGTACAGACGTACCTGCCTGCTTGTCATTATACGCTGA
GGGTCCTCGGGCTTGTGCTGGCCGTACTATTGATTCGAGCGCTTTGACTT
CTTGCTGCAGTCTGTGCTTGCATCAGTGAACCTACAGCTTCACGTGCTGT
TGGGCCGGTGTCCCTTTGGGCCGGTGCCCTCGAAGCAAGAACACCACATC
TGCAAGAACTCTACGGTTACGGGCTACACCCCGCATCCGAATGTACTCCG
ATTCCCACTACAAGTACGTTGTATTGTACGGCGGTACCCAACGGCTGTGT
GGTCTGGAACAAGTCTTGCGACGTTGAGAGCCTTACAAATTTCCCCAAGA
GTGTTCGTCTGGTGTTGGGCACCCTCTTGGTTGGCGAGAGCAATTGAGCT
CGGAAAATCGCCCGACGCTACATATGAGTATACTCACACAATGCCGACCG
TGTGGAGTCGCTACTTCACATTTTCATATGCCCTTCAAACATGATTGCCC
GGCCGGTGACGCCCTGCATCGCGTGGGATGTTTGAATGCCCTTTCTGAAC
CACCACCACTAACTGTATTGTCAGTGTAGATTTTTCTCCGGCAGGGACTG
CTGTGACAACGCGCACTTCGATATCAAGCTTTCATCTTTTGAAACATCAA
GTCAACGGGTGCACTCCGACCCACCGTAAGGTTTGGGGTTGGGGGATATC
GGTTTGTAGCGACCCCCTGTTTAGCGGCATGCCCTATTTAGCGACATGCC
CTGTTTAGCGACCACAAAATCACGTGGCACCGCCGCACTCCTTGAGTATA
ACTGCTACCGCTTGTATTGTTGACAGTTCGGTTTAGCGACCTTCCCTGAA
TAGCGGCCACATTTCGTCGTGACACGAGGGGCCGCTAGACCGCCCCCCCC
ACTGTGTGCAAATCACCAACCGAAGTCACTGTTCTAACTACAGTTCCCCC
ATGCCTCCTCCCCTTGCTCATTCACTTCCTGCCGCTGCTGCATACTCCAG
GAGTTCGTGAAGCTGGTCAGTGCGGAGGGTGCAGAATTTTGGGTCGACCG
AAAGTGTGCCATGGTGTCGGGGACCATCAAGGCCATGCTTAGCGGTGAGA
ACGAAGAGGGGTGACAGGGTGTTTGGCGAGACTACTGTGGGGCGGCGGGC
AGGGGTGGGTCGACCTCCCCGGCAGGATCTTTGTGCCGTTCCCTTGGGAG
AAAAGTGCGTGGAAAACGCAAGCACCGAGTCTCCAACAAGGGTTGGCGGG
TTTGGCCAATCAATGTCCTTGAATTCGGTCCTTTCGGTGAGTTTTGACCA
ATGCCCCGGTATTCGGTTCTTCCGCTACCTCCCTTCTCTCACCTGCACGT
TGGTTGATGTTGGTTTGTGTTCTTGGCAGGGGGGTTCGGAGAGGCGGCAT
CGGGACAGGTGCACTTCGCCGAAATCTCGACACCAATATTGGAGAAGGTC
ATCCAGTTTGTGTACTACAAGGTGGGGGAGAGGTGATGGATGGTATACAT
ATTCCGCAAGCATTGCATATAATGTTTTGGCATTGCTGGGACCATGTCGT
GTCCTAGACTCGAACAGCGCCGCTAATATTTCCATACTTAAGTGTGCGTT
GACCGTCTGGGGTTACTCAGGTCAGCGTGCACGGTGAACACCAGCGGTCT
GCTGATGCGCCGTGTGTGTAGCTGATGTAATGATTGACTCGCGACACTTT
CTAGAGGGTATCTTGTCTGGAACGTTGCTCCAGTGTGTGAATAGTGCTTA
ATTTGCTTGCCGTGGAAGTTCATCCTGCCATACATCGTGTACACCAATGT
CCTTCACCAAAAGCAACGAACGGTACACATGTTCCCCGTATTTCCCCTGC
AGAATGCCCTTATGTCAACTGTATCACCTATAGAGCTTTGTTTTTTTGGG
GGTAGGCGAAACGAACGAGCAGCAGCCGGACAACAACACAACCGCGCCAT
TTGGCCTTGTGCTCTTCGATACCCCAGGTGCGATACACCAACAGCGCGAC
CCGCATCCCCGAGTTTCACATCGAGCCGGAGCTGGCGCTGGAGTTGCTCA
TGGCCGCAAACTTTCTCGACTGCTGATTGGTCGATTCCCTGGCTCCCCAC
AAGCACGGTGCTGCTCGGGGCGCAGCCGGCAGCGACTTAGCTATCTTGGT
TTCGGAGGAACTCGCGCTTCAGAGGCAGGGAGTGCACGAGCGGTGGGACG
GTGAAGCGGTGCCGCGGTAGATATTGATGGTACTTGAGTTGGGCACCACT
TCACGGTCCCCCAAGAGGCTCACACCGTGTTTGGAGGTGAACCGCCCTCC
TTGATGGAACGGATGAATGTTCGGCAGGCTGTGGACCCACCCGCCAGCCG
CCGCCGCCGCCGCCGCCCTCCCGGCACAGCACGCCCCCCCCCGCTCCTTC
TACTTGTGTTGGCTGTTTGCGACTCGATCGATGAATGGTTTTGGAGTTGG
CAATCGTGCCTCTAGATGTTTGCGAGGCACGGCAGGGTGTTTGTCGTGTA
GATCGGGCAGAGAGTAGAGCAGCGTTACGAAAGCAGCGGTTGTATGATTT
CCTCGCGTGACGGCGTGACGTAAACGTGCGGCGTGCTGCTTCGTCAGCCG
ACCTTTTGTGTGTTTCATGCCGTTCCATGTCGCAAGCTCTGGGGCGGGAT
TGGGGTTTGTTTTGTCGTTGTCTTTTGTTTTTTTTTTGCCAGGGCAGGCA
GAGCTGGAGACGGCTGAGCGGAGTTCGGATCATTCGCTCGATCGATCGAA
GTGATCGTTGTCCTGGTCACAACAACGTATATTTTTTGCTGCTCTCTGGA
TTGTACTCGTAGGTATTCGTGCGCGTGTGCGTATTGGCTGTAGTCTCCGG
CGCGCTTTTGTCAACAAGAAAATTTGATCTATCCCCCGTCTTCGTCGTCC
GTCTCATAACACCTCGGAAGCGCTTGTGCTGATGTCATCGGTGCCCGCTG
GCTACTCGCCGTTCCTTTCGGGGGGAGTGGGGGCGTACTAGCGTTTGGCC
GGCCTGCCACGAGACTGTAGATGCGCTGGAGTCGGTCCATGCTACTCAAC
CAAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:116869..120123+

>mRNA_E-siliculosus-1a_M_contig91.17193.1 ID=mRNA_E-siliculosus-1a_M_contig91.17193.1|Name=mRNA_E-siliculosus-1a_M_contig91.17193.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=912bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:116869..120123+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCTACGGAGGATCAGATGGCTACGGAGGATCAGTCTGTGCTTGCATC
AGTGAACCTACAGCTTCACGTGCTGTTGGGCCGGTGTCCCTTTGGGCCGG
TGCCCTCGAAGCAAGAACACCACATCTGCAAGAACTCTACGGTTACGGGC
TACACCCCGCATCCGAATGTACTCCGATTCCCACTACAATCTGTGCTTGC
ATCAGTGAACCTACAGCTTCACGTGCTGTTGGGCCGGTGTCCCTTTGGGC
CGGTGCCCTCGAAGCAAGAACACCACATCTGCAAGAACTCTACGGTTACG
GGCTACACCCCGCATCCGAATGTACTCCGATTCCCACTACAAGAGTTCGT
GAAGCTGGTCAGTGCGGAGGGTGCAGAATTTTGGGTCGACCGAAAGTGTG
CCATGGTGTCGGGGACCATCAAGGCCATGCTTAGCGGAGTTCGTGAAGCT
GGTCAGTGCGGAGGGTGCAGAATTTTGGGTCGACCGAAAGTGTGCCATGG
TGTCGGGGACCATCAAGGCCATGCTTAGCGGGGGGTTCGGAGAGGCGGCA
TCGGGACAGGTGCACTTCGCCGAAATCTCGACACCAATATTGGAGAAGGT
CATCCAGTTTGTGTACTACAAGGGGGGTTCGGAGAGGCGGCATCGGGACA
GGTGCACTTCGCCGAAATCTCGACACCAATATTGGAGAAGGTCATCCAGT
TTGTGTACTACAAGGTGCGATACACCAACAGCGCGACCCGCATCCCCGAG
TTTCACATCGAGCCGGAGCTGGCGCTGGAGTTGCTCATGGCCGCAAACTT
TCTCGACTGCTGAGTGCGATACACCAACAGCGCGACCCGCATCCCCGAGT
TTCACATCGAGCCGGAGCTGGCGCTGGAGTTGCTCATGGCCGCAAACTTT
CTCGACTGCTGA
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