mRNA_E-siliculosus-1a_M_contig90.17115.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig90.17115.1
Unique NamemRNA_E-siliculosus-1a_M_contig90.17115.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17115.1 vs. uniprot
Match: D8LKH9_ECTSI (Nudix hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKH9_ECTSI)

HSP 1 Score: 460 bits (1183), Expect = 2.420e-159
Identity = 237/246 (96.34%), Postives = 241/246 (97.97%), Query Frame = 3 
Query:  249 MSSAGRSSILSTTNLDTPDFRWVSLRKVLWQDPKGNSRVWECAFRNTRKSECDGVAVIVFVSYPVSKKEDEILLISQYRPPVASEVIESPAGLVDAGEDAKEAAERELLEETGFSGKVTSVSPIVPCDPGMTDANMRFVTIEVNGDSEENQNPKARPEDGEFITLRRLPAKSMQEGLDDFANAGFQVDARLYAMAVGYTLGRRAAAAGEGDCPRRRLGRAVASSLVGVVVAATLMVAVGGARRGRS 986
            MSSAGRSS+LSTTNLDTPDFRWVSLRK+LWQDPKGN+RVWECAFRNTRKSECDGVAVIVFVSYPVSKKEDEILLISQYRPPVASEVIESPAGLVDAGEDAKEAAERELLEETGFSGKVTSVSPIVPCDPGMTDANMRFVTIEVNGDSEENQNPKARPEDGEFITLRRLPA SMQEGLD+FANAGFQVDARLYAMAVGYTLGRRAAAAGEG CPRR LG AVASSLVGVVVAATLMV VGGARRGRS
Sbjct:    1 MSSAGRSSVLSTTNLDTPDFRWVSLRKILWQDPKGNNRVWECAFRNTRKSECDGVAVIVFVSYPVSKKEDEILLISQYRPPVASEVIESPAGLVDAGEDAKEAAERELLEETGFSGKVTSVSPIVPCDPGMTDANMRFVTIEVNGDSEENQNPKARPEDGEFITLRRLPATSMQEGLDEFANAGFQVDARLYAMAVGYTLGRRAAAAGEGVCPRRWLGCAVASSLVGVVVAATLMVVVGGARRGRS 246
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17115.1 vs. uniprot
Match: A0A4D9CR14_9STRA (Nudix hydrolase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR14_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.600e-49
Identity = 89/199 (44.72%), Postives = 128/199 (64.32%), Query Frame = 3 
Query:  273 ILSTTNLDTPDFRWVSLRKVLWQDPKGNSRVWECAFRNTRKSECDG------VAVIVFVSYPVSKKEDEILLISQYRPPVASEVIESPAGLVDAGEDAKEAAERELLEETGFSGKVTSVSPIVPCDPGMTDANMRFVTIEVNGDSEENQNPKARPEDGEFITLRRLPAKSMQEGLDDFANAGFQVDARLYAMAVGYTLG 851
            ++ T +   P FRWVSL+++ + D +G  R WE A R  R++  +G      V ++  +S   +K  D I+L+SQ+RPPV  EV+E PAGLVD GED   +A REL EETGF G VT VSPIV  DPG+++A+MR+V + ++GD   NQ P A P++ E IT+ R+P K +   ++ F   GF++DARLY +A+G   G
Sbjct:    4 VIKTEDHSAPGFRWVSLKRLQYCDARGRKRTWEMAERIQRRTASEGPPPANGVGIVAIISTSFAKDNDHIVLVSQFRPPVGKEVLELPAGLVDDGEDETTSAIRELREETGFEGMVTHVSPIVYSDPGLSNASMRYVFMRIDGDLGSNQQPVAMPDEDEIITVHRVPVKRLLNEVEGFREQGFEIDARLYGLALGLQFG 202
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17115.1 vs. uniprot
Match: A0A507BWH5_9FUNG (Nudix hydrolase domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BWH5_9FUNG)

HSP 1 Score: 172 bits (435), Expect = 2.080e-47
Identity = 88/192 (45.83%), Postives = 123/192 (64.06%), Query Frame = 3 
Query:  273 ILSTTNLDTPDFRWVSLRKVLWQDPKGNSRVWECAFRNTRKSECDGVAVIVFVSYPVSKKEDEILLISQYRPPVASEVIESPAGLVDAGEDAKEAAERELLEETGFSGKVTSVSPIVPCDPGMTDANMRFVTIEVNGDSEENQNPKARPEDGEFITLRRLPAKSMQEGLDDFANAGFQVDARLYAMAVGYTL 848
            I+S   +   D +WV L+K+ + DP G  R+WE A R +RK + D V ++  +  P   K  E +L++Q+RPPV ++ +E PAGLVD GE A++AA REL EETGF GK    S I+  DPGM++ANM+FVT+EV+    EN +PKA P++GEFI +  +P   +   L  F + GF+VDARLY  A G  L
Sbjct:    6 IISKEPMKDEDAKWVKLKKITYSDPAGKIRLWESAERTSRKGDIDAVGILALLKMP--NKPTETVLVTQFRPPVGAQCVEMPAGLVDKGETAEQAAVRELREETGFIGKAIRSSEIMDSDPGMSNANMKFVTVEVDRTLPENHSPKAEPDEGEFIDIHIVPLVGLLGTLKGFISKGFKVDARLYHFAEGLDL 195
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17115.1 vs. uniprot
Match: F0XWS1_AURAN (Nudix hydrolase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWS1_AURAN)

HSP 1 Score: 161 bits (408), Expect = 1.300e-43
Identity = 88/182 (48.35%), Postives = 115/182 (63.19%), Query Frame = 3 
Query:  306 FRWVSLRKVLWQDPKGNSRVWECAFRNTRKSECDGVAVIVFVSYPVSKKEDEILLISQYRPPVASEVIESPAGLVDAGEDAKEAAERELLEETGFSGKVTSVSPIVPCDPGMTDANMRFVTIEVNGDSEENQNPKARPEDGEFITLRRLPAKSMQEGLDDFANA-GFQVDARLYAMAVGYTL 848
            FRW+ L+K+ + D  G  R WE A R TR+   DGV ++  V       +  ++L++Q+RPP+   V+E PAGLVD GE A  AA REL EETGF G VTSVSP+V  DPGM+ ANM+ V ++V+GD+ EN  P A PE+GEFIT+  +P   +   L     A G+ VDARLYA A G  L
Sbjct:   13 FRWLRLKKLAYVDQTGRRRFWEMAERTTRRGAVDGVGIVAVVRRRACAPQ--VVLVTQFRPPLDGHVLELPAGLVDGGEGAGGAALRELKEETGFVGTVTSVSPVVASDPGMSAANMQLVVVDVDGDAPENLKPVAEPEEGEFITVLLVPLAGLAARLRAEMKARGYHVDARLYAYAAGLEL 192
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17115.1 vs. uniprot
Match: A0A8K0NV64_9TREE (Uncharacterized protein n=2 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0NV64_9TREE)

HSP 1 Score: 162 bits (410), Expect = 2.660e-43
Identity = 88/210 (41.90%), Postives = 131/210 (62.38%), Query Frame = 3 
Query:  243 IIMSSAGRSSILSTTNLDTPDFRWVSLRKVLWQDPKGNSRVWECAFRNTRKSECDGVAVIVFVSYPVSKKEDEILLISQYRPPVASEVIESPAGLVDAGEDAKEAAERELLEETGFSG--------KVTSVSPIVPCDPGMTDANMRFVTIEVNGDSEENQNPKARPEDGEFITLRRLPAKSMQEGLDDFANAGFQVDARLYAMAVGYTL 848
            IIMS      ++ + ++     +WV LRK+ W+D  G  RVWE A R+TRK E D VA++  +++P  KK    ++I QYRPP+   +IE PAGLVD GE A+ AA REL EETG+ G         V +V+PI+  DPG+T ANM+ V ++V   +E++  P+A+ ++GEFI  R +  K + + L+D++  GF +DARL  +A+G  L
Sbjct:   27 IIMSPQQEPRVIESIDVPGDGMKWVKLRKINWEDQTGRKRVWEAADRSTRKGEIDAVAIVALIAHP--KKPLSTVIIEQYRPPIEKYIIELPAGLVDEGESAETAALRELYEETGYGGGDKGGGKATVRTVTPILVSDPGLTSANMKLVIVDVQL-TEDDPEPEAKLDEGEFIVKRIVEIKDLWKTLEDYSEKGFVLDARLSHIAMGLHL 233
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17115.1 vs. uniprot
Match: A0A1Y1VFB0_9FUNG (Nudix hydrolase domain-containing protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VFB0_9FUNG)

HSP 1 Score: 160 bits (406), Expect = 3.140e-43
Identity = 86/189 (45.50%), Postives = 117/189 (61.90%), Query Frame = 3 
Query:  273 ILSTTNLDTPDFRWVSLRKVLWQDPKGNSRVWECAFRNTRKSECDGVAVIVFVSYPVSKKEDEILLISQYRPPVASEVIESPAGLVDAGEDAKEAAERELLEETGFSGKVTSVSPIVPCDPGMTDANMRFVTIEVNGDSEENQNPKARPEDGEFITLRRLPAKSMQEGLDDFANAGFQVDARLYAMAVG 839
            IL+ T +   + +WV+L K+ +QDP G  RVWE   R +RK +CD VA+   +S    K E E LL+SQ+RPPV     E PAGL+D GE A +AA REL EETG+ G V  VSPI+  DPG+T+ANM+ V ++V+   E NQN  A P++GEFI +  +P  ++ + L +       VDARL   A G
Sbjct:    6 ILNITGMSNNESKWVALDKIEYQDPSGKKRVWEMCHRTSRKGDCDAVAIFTILSATEDKPE-ETLLVSQFRPPVGKLTFEFPAGLIDEGETAAQAAVRELKEETGYCGVVREVSPIIFSDPGLTNANMKLVVMDVDRSLEINQNVVAVPDEGEFIDVFHIPVNNLYDFLIEKEKTTHAVDARLLHFAYG 193
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17115.1 vs. uniprot
Match: A0A1Y1XG56_9FUNG (Nudix hydrolase domain-containing protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XG56_9FUNG)

HSP 1 Score: 160 bits (405), Expect = 4.400e-43
Identity = 85/192 (44.27%), Postives = 117/192 (60.94%), Query Frame = 3 
Query:  273 ILSTTNLDTPDFRWVSLRKVLWQDPKGNSRVWECAFRNTRKSECDGVAVIVFVSYPVSKKEDEILLISQYRPPVASEVIESPAGLVDAGEDAKEAAERELLEETGFSGKVTSVSPIVPCDPGMTDANMRFVTIEVNGDSEENQNPKARPEDGEFITLRRLPAKSMQEGLDDFANAGFQVDARLYAMAVGYTL 848
            IL+ T L+  + +WV+L K+ +QDP G  RVWE   R +RK +CD V +   +S     K  E LL+SQ+RPPV     E PAGL+D  E A++AA REL EETG+ G V  V+PI+  DPG+T+ANM+ V ++V+   E NQN  A P++GEFI +  +P   +   L + AN    VDARL   A G  +
Sbjct:    6 ILNVTGLNNSEAKWVALDKIEYQDPSGKKRVWEMCHRTSRKGDCDAVVIFTILS-ATKDKPKETLLVSQFRPPVGKLTFEFPAGLIDENETAEQAAVRELKEETGYHGVVREVTPIIFSDPGLTNANMKLVVMDVDRSLEINQNVVAVPDEGEFIDVFHIPVDKLYSFLIEKANTTHAVDARLLHFAFGLNV 196
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17115.1 vs. uniprot
Match: A0A316W1L6_9BASI (Nudix hydrolase domain-containing protein n=2 Tax=Ceraceosorus TaxID=401624 RepID=A0A316W1L6_9BASI)

HSP 1 Score: 160 bits (404), Expect = 1.050e-42
Identity = 99/212 (46.70%), Postives = 129/212 (60.85%), Query Frame = 3 
Query:  255 SAGRSSILSTTNLDTPDFRWVSLRKVLWQDPKGNSRVWECAFRNTRKSECDGVAVIVFVSYPVSKKEDEILLISQYRPPVASEVIESPAGLVDAGED----AKEAAERELLEETGF-------SGKVTSVSPIVPCDPGMTDANMRF--VTIEVNGDSEENQNPKARPEDGEFITLRRLPAKSMQEGLDDFANAGFQVDARLYAMAVGYTLG 851
            S+  + +L +  +D  + +WV LR + W D +G  R WE A R TRK E D VA+   +  P S  E  +LLISQ+RPPVAS VIE PAGLVDAGE+    A++AA REL EETG+       S  V   S I+  DPG++ ANM+   V I ++ DSEE   P A+PE+GEFI    +P K + + L DF + GF VDARL  +AVG  LG
Sbjct:    2 SSKDAKVLRSRPMDDSEAKWVGLRAIEWVDQEGRERKWESADRKTRKGEVDAVAICALIHRPSS--ETHVLLISQFRPPVASSVIEMPAGLVDAGEEGDEGAQKAALRELEEETGYGTTKQGGSVDVVETSTIMVNDPGLSGANMKLCVVRIHLSDDSEE---PVAKPEEGEFIEKHLVPVKGLYKTLKDFQDKGFAVDARLAHLAVGLELG 208
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17115.1 vs. uniprot
Match: A0A316VDH4_9BASI (Nudix hydrolase domain-containing protein n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316VDH4_9BASI)

HSP 1 Score: 159 bits (403), Expect = 1.340e-42
Identity = 94/206 (45.63%), Postives = 121/206 (58.74%), Query Frame = 3 
Query:  267 SSILSTTNLDTPDFRWVSLRKVLWQDPKGNSRVWECAFRNTRKSECDGVAVIVFVSYPVSKKEDEILLISQYRPPVASEVIESPAGLVDAGEDAKE----AAERELLEETGFS-----GK--VTSVSPIVPCDPGMTDANMRFVTIEVNGDSEENQNPKARPEDGEFITLRRLPAKSMQEGLDDFANAGFQVDARLYAMAVGYTLG 851
            S +L +  L   D +WV LR + WQDP G  R WECA R TRK + D VA+   V  P S  E  +LL+SQ+RPPV S VIE PAGL+DAGE+ +E    AA REL EETG+      GK  V  VS ++  DPGMT +NM+   I ++  +++   P A P++GEFI    +P   +   L DF   GF VDARL   A+G  LG
Sbjct:    2 SKVLRSEPLSDADAKWVGLRAIYWQDPTGKERKWECADRRTRKGDADAVAICAIVQRPSS--EPHMLLVSQFRPPVNSSVIEMPAGLIDAGEEGEEGTRRAALRELKEETGYGTDKEGGKIDVKLVSTVMANDPGMTSSNMKLCVIRIDL-ADDAPEPVAEPDEGEFIERHLVPVHGLMNALLDFQKKGFAVDARLAHAAIGIELG 204
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17115.1 vs. uniprot
Match: A0A0D7BB00_9AGAR (Nudix hydrolase domain-containing protein n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7BB00_9AGAR)

HSP 1 Score: 157 bits (397), Expect = 8.420e-42
Identity = 87/202 (43.07%), Postives = 125/202 (61.88%), Query Frame = 3 
Query:  258 AGRSSILSTTNLDTPDFRWVSLRKVLWQDPKGNSRVWECAFRNTRKSE-CDGVAVIVFVSYPVSKKEDEILLISQYRPPVASEVIESPAGLVDAGEDAKEAAERELLEETGFSG-KVTSVSPIVPCDPGMTDANMRFVTIEVNGDSEENQNPKARPEDGEFITLRRLPAKSMQEGLDDFANAGFQVDARLYAMAVGYTLGRR 857
            +G+  +LS+ +L T   +W+SL+K+ ++D +G  R WECA R TRKS   D VA++  +    +      ++I QYRPP+ + V+E PAGL+D GE A++AA REL+EETGF   ++   SP++  DPGMT+ANM+ V + V    E  + P+A+ E GEFIT R +    + E L  +   GF VDARL   A GY L RR
Sbjct:    2 SGQPKVLSSVDLPTDQAKWISLKKITYRDAEGKERPWECAERRTRKSTGVDAVAMLAMIKSKTNAFPLSTVIIEQYRPPIDAFVVELPAGLIDEGESAEDAALRELVEETGFKAERIIESSPVIVSDPGMTNANMKLVLLSVTLPGE-METPEAQLEAGEFITKRVVALADLNEELKAYDKRGFVVDARLSHFAQGYDLARR 202
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig90.17115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKH9_ECTSI2.420e-15996.34Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A4D9CR14_9STRA2.600e-4944.72Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A507BWH5_9FUNG2.080e-4745.83Nudix hydrolase domain-containing protein n=1 Tax=... [more]
F0XWS1_AURAN1.300e-4348.35Nudix hydrolase domain-containing protein (Fragmen... [more]
A0A8K0NV64_9TREE2.660e-4341.90Uncharacterized protein n=2 Tax=Filobasidium flori... [more]
A0A1Y1VFB0_9FUNG3.140e-4345.50Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A1Y1XG56_9FUNG4.400e-4344.27Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A316W1L6_9BASI1.050e-4246.70Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A316VDH4_9BASI1.340e-4245.63Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A0D7BB00_9AGAR8.420e-4243.07Nudix hydrolase domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig90contigE-siliculosus-1a_M_contig90:103221..108861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size741
Model size1440
Exons5
Ec32 orthologEc-16_003020.1
Ec32 ortholog descriptionNUDIX hydrolase domain
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03019,ko03021,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EC2.3.1.47,2.7.7.96,3.6.1.13,3.6.1.58,6.3.1.2
EggNOG OGsCOG0494@1,KOG3041@2759
EggNOG free text desc.ADP-glucose pyrophosphohydrolase activity
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009132,GO:0009134,GO:0009185,GO:0009191,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047631,GO:0055086,GO:0071704,GO:1901135,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576
KEGG ModuleM00123,M00573,M00577
KEGG Pathwayko00220,ko00230,ko00250,ko00630,ko00780,ko00910,ko01100,ko01120,ko01230,ko02020,ko03015,ko04217,ko04724,ko04727,map00220,map00230,map00250,map00630,map00780,map00910,map01100,map01120,map01230,map02020,map03015,map04217,map04724,map04727
KEGG ReactionR00253,R01054,R03210,R10124,R11553
KEGG koko:K00652,ko:K01515,ko:K01915,ko:K13987,ko:K14400
KEGG rclassRC00002,RC00004,RC00010,RC00039,RC02725,RC02798
Preferred namendx-2
Seed eggNOG ortholog2880.D8LKH9
Seed ortholog evalue3.9e-128
Seed ortholog score464.2
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936421.046713-UTR-E-siliculosus-1a_M_contig90:103220..1034681622936421.046713-UTR-E-siliculosus-1a_M_contig90:103220..103468Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 103221..103468 +
1696251070.5824473-UTR-E-siliculosus-1a_M_contig90:103220..1034681696251070.5824473-UTR-E-siliculosus-1a_M_contig90:103220..103468Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 103221..103468 +
1622936421.1604593-UTR-E-siliculosus-1a_M_contig90:108410..1088611622936421.1604593-UTR-E-siliculosus-1a_M_contig90:108410..108861Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 108411..108861 +
1696251070.6653726-UTR-E-siliculosus-1a_M_contig90:108410..1088611696251070.6653726-UTR-E-siliculosus-1a_M_contig90:108410..108861Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 108411..108861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936421.0687582-CDS-E-siliculosus-1a_M_contig90:103468..1035611622936421.0687582-CDS-E-siliculosus-1a_M_contig90:103468..103561Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 103469..103561 +
1696251070.5949535-CDS-E-siliculosus-1a_M_contig90:103468..1035611696251070.5949535-CDS-E-siliculosus-1a_M_contig90:103468..103561Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 103469..103561 +
1622936421.0951147-CDS-E-siliculosus-1a_M_contig90:105998..1061601622936421.0951147-CDS-E-siliculosus-1a_M_contig90:105998..106160Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 105999..106160 +
1696251070.6128006-CDS-E-siliculosus-1a_M_contig90:105998..1061601696251070.6128006-CDS-E-siliculosus-1a_M_contig90:105998..106160Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 105999..106160 +
1622936421.1128297-CDS-E-siliculosus-1a_M_contig90:106977..1071321622936421.1128297-CDS-E-siliculosus-1a_M_contig90:106977..107132Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 106978..107132 +
1696251070.6239417-CDS-E-siliculosus-1a_M_contig90:106977..1071321696251070.6239417-CDS-E-siliculosus-1a_M_contig90:106977..107132Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 106978..107132 +
1622936421.126265-CDS-E-siliculosus-1a_M_contig90:107540..1076091622936421.126265-CDS-E-siliculosus-1a_M_contig90:107540..107609Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 107541..107609 +
1696251070.636456-CDS-E-siliculosus-1a_M_contig90:107540..1076091696251070.636456-CDS-E-siliculosus-1a_M_contig90:107540..107609Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 107541..107609 +
1622936421.145174-CDS-E-siliculosus-1a_M_contig90:108148..1084101622936421.145174-CDS-E-siliculosus-1a_M_contig90:108148..108410Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 108149..108410 +
1696251070.654933-CDS-E-siliculosus-1a_M_contig90:108148..1084101696251070.654933-CDS-E-siliculosus-1a_M_contig90:108148..108410Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 108149..108410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig90.17115.1prot_E-siliculosus-1a_M_contig90.17115.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig90 103469..108410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig90.17115.1

>prot_E-siliculosus-1a_M_contig90.17115.1 ID=prot_E-siliculosus-1a_M_contig90.17115.1|Name=mRNA_E-siliculosus-1a_M_contig90.17115.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=247bp
MSSAGRSSILSTTNLDTPDFRWVSLRKVLWQDPKGNSRVWECAFRNTRKS
ECDGVAVIVFVSYPVSKKEDEILLISQYRPPVASEVIESPAGLVDAGEDA
KEAAERELLEETGFSGKVTSVSPIVPCDPGMTDANMRFVTIEVNGDSEEN
QNPKARPEDGEFITLRRLPAKSMQEGLDDFANAGFQVDARLYAMAVGYTL
GRRAAAAGEGDCPRRRLGRAVASSLVGVVVAATLMVAVGGARRGRS*
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mRNA from alignment at E-siliculosus-1a_M_contig90:103221..108861+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig90.17115.1 ID=mRNA_E-siliculosus-1a_M_contig90.17115.1|Name=mRNA_E-siliculosus-1a_M_contig90.17115.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5641bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:103221..108861+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCGCAACTTCGCCCAAAAGTCAAGAACAACCGCCGCCGCTTCTTGCTTCT
TGCCAGCTTGCCCAACAACTCCGACTCTCCCTCCGTGCTCCTGGGCCCCC
ACAACCTCTACTCCTCGCTCTCCGCTCTCCGCTCTCCGCTGCACATCTCA
ACACACCCAAGGCCTCTTCTTTATCCTAGGACTCGCTCAAAAGGGGTGTG
GGACGTGGGACACAACAGAAGAAAACCAGCACTTTGCATATCATCATCAT
GTCGTCTGCTGGTCGATCCTCCATTCTGTCTACGACCAACCTGGACACGC
CAGACTTCCGGTGGGTTAGCCTGAGGAAGGTCTTGTGGCAGGTGGGTGGG
CGTGATCGGTCATGTGCCCAGCGATCGGTTGAGAATTTCCGACCTGGAAA
TAGAGCCGGCGCAGCCCAAACGAAAAAAAAAAAGCGATGCGAAAATTTGT
GGGTAACCACATTTTTGACCGTCGAAACCGCAAGGGGGAACACTGAAAAT
CAAACGTGTCCCTTGCAAGTAGGACAATTCATCAACTTCCGTACACCTCT
CAAAAATTCCCCTGTACCCAGGTGACAACGGAAAAATTGGGAATCAAATT
CTGCTGAACCAGAAATCTGCACTTCAAAGAGCCAGCCAGCAACATCTGCT
GAGAGGAGCACGCATGCATGCAGTCATTCCGGTTTTAGCTCAGCCACCCA
CCTCTCTTGGTTTTCGGAGCTAGCCGGCATTTCGGATCCAGCCGTTGTGC
GATACTAATCATCTCCGCTAGGACTTGAGGAGGACGGACTGTAAAGCTGT
AGAGTACACTGCATCGCATCTGCTCCTTGCTGCTGCTCTCGGCTGACCCA
GGACTCCAAAAAATCCCCACAGGTACGAACAAACTCTTTATGTGTGGTTG
GTCGAAGATGGACTGGTCTCTGTACAAGCCAACAAGCCACCATGCACAAC
ACACTACTACTGCTGCCCTTCACCTGCCCTTCACCTGTCGCCGTCCTTCC
ACGTCTACCTGTCCTTGGCACATGCTGCCACTCGATGCGACAACATCAGG
GAACATCATGGACACAGGGAGTACTTTCCGTACCCACGTACACCGTCAAA
ATGTCAGAACAACTAAATCTCATTCCTCCTGTCGTGCCAAACATAAATGA
TGTATTATGCACGAAATGATCAACTCTTCTTTACATATGGTCTGTGCTGC
CCACTGATGGGAGAGATATAACCATACTCCCTGCCTACACACGGGCGAGA
GAGATGACCAACCCATTACATTTGAACACACGAACACCCACATATCGGTG
ATGGAACCTCAACCACACGCCTTACCTACGACCGACCACGTCAGGAGGCA
ATGATGAAAGAATGTTCTCCCGTGCCCTTCGCACATTTATGGGCATGAAA
TTACACAAAACTGGGAGACCACTCCCGTGTGCCGCACAATTTGACACAGA
TGCATGCATATGCATACCAAACTCAATTACTTACCAAATCATATTCCTCG
CGTATAATATGCATACCAAACTGGAAATACACGTGTAAAATGGATGGAGA
TCCACAACCAACAGGGTGCCACACATAAAACACCCGACTAACTAACAGCC
CAACACTTTTCGTCTACACCTTCCCAACATAACATATATAAGACACACAA
CACAGCTACCAAACTGTCTTGTTGAGCCTGTTATCCGCAGGGGAGATGTC
CATATATGCTGTCTGGGAAATCGTGGACACACAACAGGTAGTTTTCTTTG
ACGCTATGATTCCATTGCTAATCTGTCTTTGACTCTTTTCTCTGACGGAG
ATGGACTCGTTGTGTTGTATTTGGAAAAATAAAAAAAAAAAAAATGCCTT
GAACTTGTTTGAACTCGAAGTGAAGAGTCGTGGCTCCTAGGTGAGGGGGT
GGTGTGACAAAAACGCCCTCTCGACCCTCATATATCTGATTGCAGCCTAC
TGAGTCATGACTGTATAACAATGCAGCCTACGGAAGCCGACTCTACCTCG
ACTGTACCGTTGACTCTACATTATAATGGGGTTGGAGCAGCCCGCCACAC
ATCGAGGATCCACAGAGGACGCAGATCCTCATCATCAATCCTTGCAGAAA
GTGCAGGGAGGACGACACTGGCCGTAAGCCATCCTTGCTTTTCAGGTTCT
CTTTGCATGCTGTACGACTACACCGCAGTAGTTCACTGCTGTGTAGTACA
TGCATGCATGGTTATTACGCTTGGTCTAGGAGTTAAATCGCTTGTCCGGC
CACACCCTGCTGTGTGATCGACACAGTACCCCGTGCGGTTTCCCCTCTGT
GCTTTCCTACCGACGAGCGGGGGTGCCACAAGTACAGTAGCAGCTAGACT
ATGCCACTGCTGCTGTAGCACTTTTGCTGCATCGCCTGGGACAGTTGCGC
GAAAATATTTGCAGCGTCATCATGGCGTCGTAACAATTAACGAGGGTGTA
GCCGTAGCACTCCGTAGCGGTGTGTGTGGTAATTGCCTCAGCTCCTCCTC
CTTATGCCTTCCAAACCTGCACGTTGTCCCGTTGTCCGTTCATCAAACAC
GTAGAGAGAGATACAGCCGTGTGCGGAGGTGAGCCTCGGGTCGGCACCAG
GAAGCGAATCTTGTATTGACGAACGCATCGCCCTCCTGTGTGCGGAACAG
CGCTAGTGTGGAATCCCTCCCTCAAAAGAAGGGCCGTTTTGCGTGTTTTC
GCCACGGACACACACCGGCACGCTATAATCGCTGTCCCCTGGCACCTGTT
TTTCTCCCTCTTGTTTTTTTTCGGGCAGGACCCGAAGGGGAACAGCAGAG
TATGGGAGTGCGCCTTCCGCAACACTCGCAAGTCCGAGTGCGACGGGGTG
GCCGTGATCGTCTTCGTCTCATACCCTGTCTCCAAGAAGGAGGACGAGAT
CTTGCTCATCTCCCAGTACAGGCCGCCGGTTGCATCAGAGGTGCGCCGAT
GCGTGCACTAGAATTAACCCCATTGCTCTATTGTAGTACTGACTCCTCTT
GCTGCGGTTACATCGTGGTGTTTGAAGGGCACTGACTGCGGTAGAATTGG
ACGCAGCGGCGCTGCTAGTCGTCTGAGAGGTTATTTTACGGCAAAAATGT
GCCGACTAAGTTCAGTTGTGATTGGTTGTCACCCTCCCCTCCCGGCCTCT
CCCCGCATAAAGGCCCCTCCCTAGTTTTATACCGACCACCTGCCCATTTG
TTGGGGCGGCCGTACAGCTAACTGTGCCGCATGGTCGGAGAAAAGGTAGC
CTCCTCGGGAAGCTGCTCTGATCTTGCTTGGCAAGGGTGTACAGCTGCGG
CATGTGTCTTGGAGGGTTGCTTGAGTTCGTGTGCACGTGGCCTCTACCTG
TAAGTCCTGCTGCAGGCTACGCCTCTTGGGTAGAGCGGGGAACGAGAGCC
CGCGCTGCAATATTCTAGAAAGACGGGGTTCACGGTCGGAGCCGGTCTCT
ACTTCATTGGTCATTGCTCCCCATTCCCTCACGACACGTTGTTGACCCCT
TCATATTGTTCCCCTCTCTAACTCTATTGTGATTCCTGGCATCACACAGC
TCAACCTCGCCTTCCCTGCTGCCGAAATGATGCTATCGGACCCTTGGTGC
TCCTGTCCCCTAGCCGCCCCGTTCTACGCATACATACGCTCGGGGACTCA
CCCGTTACGTTACCTCACACACATAGCACCCCCCCCCCTCTCCTTTCTCG
AGCCTTTGCCTATCTCGTGCGTCCTCCGCCCTGTTGTTTGCGTCTGGTGG
GACTCAGGTGATCGAGTCCCCCGCGGGTCTGGTCGACGCGGGAGAAGATG
CGAAGGAAGCGGCAGAGCGTGAGCTGCTCGAGGAGACGGGGTTCTCGGGC
AAGGTTACGTCCGTGTCGCCGATAGTGCCCTGCGACCCGGGCATGACGGA
CGCCAACATGCGGTACGTGTTTCGAGTGTGTGGTGTAGGTGCGGTTTCTG
ATTGGGTTGAGTTTGGTGTCGGCGTGTCGATGTTGCTGCGTGTCCCTGCT
GTGTTTTTTTTAGTTGTTGGGGGATGCACCTGCGTGTTAGAGATGAGATT
TTTGAGTCCGCCGTGACACGCATACGCGACCAGTGGTCGGGTGAAACGAA
TACGGTTCGTCTTTGGTCCCTTTGGCACTGCTTCTGTGCTTTTTTCCCGT
ATTTTTTTTAGCAAGCTTAGTATTGAGTGATTTCCTCTACACGTCACAAC
TGCTGCTGTGTTGACTGTTTCGGTTTGTATTTCATTAATCCGGTGAGCTT
ACGCACTACTCAGCGCTTGCCAACGCCACCCCAAACGCTGCTCCCGCCGT
GTTCTGTGTCGGATACATAGGTTTGTCACCATAGAGGTTAACGGCGACTC
CGAGGAGAACCAGAACCCGAAAGCCCGCCCGGAAGACGGGTGAGAAGACG
GTGGAGGCGTTTAGACTGGGGGGAGGGGGGGCACTCATGTTTTTTGCATG
TCTTAGCGGTCAGACCATTGACCACGCGACCCCGAGAGGACCGAGCCGAT
CACCGATGATGGCCAATCGTCCCTTCCCACTTGGTAGATATAGGTGTTTG
GACTGGAGGGTGGTCGTTATGCGCTGGGACGCCACCCAGAAATAGAAGCG
ACTGGGAGTGATACAATAATGACACTTCATGAAAAGGGGTTGTGCATAGG
ACGACGTTCGTTTGAAAAGCACTTACCAGACAGCTGTACGGAAGGAGATG
ATCCCGTGGGAAAGGTATCGACGCCGGCCCGTCTCCCCGAGGGTGTGCCT
GCTTTTTTCGGGGATCATTGCATTTTTGCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCTATCCTCCTCCTCCTCTCCTTCCAGTGAGGCGGGAAACTCACGGGA
CTAATTAATTTTCTGCGCGTGTGTGCAGAGAATTTATCACGCTCCGGAGG
CTCCCGGCGAAGTCGATGCAGGAAGGCCTGGACGATTTCGCAAACGCGGG
ATTCCAGGTCGACGCCCGCCTGTACGCCATGGCTGTGGGCTACACGTTGG
GGAGACGCGCTGCTGCGGCCGGTGAAGGTGACTGCCCGCGGCGACGGCTG
GGACGCGCCGTGGCGTCTTCGCTGGTTGGTGTTGTGGTGGCGGCTACGTT
GATGGTGGCGGTGGGTGGTGCGAGGCGCGGCAGATCATAAGAGCACCACA
CCCGCGGGTGGTGGTGTGTTAGTTCGGCCCAGAATTTCGTTCCGAGAAGC
TTGTTACTGGAGAAAAGGTTCATATTCTGCACGCCAACACAATACAGTGG
TTGATGCTGCGGAAGGAGGAGAGGAGGCACAGAGAAGATGCAGAAATTGC
CTCAGTCGGTGGGAGAGAAACGATAACATTTTGTTGTGGCTCACTGCTGT
GCTGGAGGTGGGGCGTGTTTGCAAGAGGCTGCTGGAACCGGCACAGGTGA
CTTACGACCCGGTCCCAGAAGGGGTGTGCGAGGGGGACGAATCGTTGGGG
TGTGCCGTCGTTTATTTTAAAAGTGCTGCCCCGTTGAACCGATCGTTGTA
CGATGGACTTTCTTACCTAGAAAGGAGGGCGTATGAGTATTGTGCCGTGA
TTGTGCGTGCACGACGCTTCGTTTCGGTGCACGGGTGGGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig90:103221..108861+

>mRNA_E-siliculosus-1a_M_contig90.17115.1 ID=mRNA_E-siliculosus-1a_M_contig90.17115.1|Name=mRNA_E-siliculosus-1a_M_contig90.17115.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1482bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:103221..108861+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCGTCTGCTGGTCGATCCTCCATTCTGTCTACGACCAACCTGGACAC
GCCAGACTTCCGGTGGGTTAGCCTGAGGAAGGTCTTGTGGCAGATGTCGT
CTGCTGGTCGATCCTCCATTCTGTCTACGACCAACCTGGACACGCCAGAC
TTCCGGTGGGTTAGCCTGAGGAAGGTCTTGTGGCAGGACCCGAAGGGGAA
CAGCAGAGTATGGGAGTGCGCCTTCCGCAACACTCGCAAGTCCGAGTGCG
ACGGGGTGGCCGTGATCGTCTTCGTCTCATACCCTGTCTCCAAGAAGGAG
GACGAGATCTTGCTCATCTCCCAGTACAGGCCGCCGGTTGCATCAGAGGA
CCCGAAGGGGAACAGCAGAGTATGGGAGTGCGCCTTCCGCAACACTCGCA
AGTCCGAGTGCGACGGGGTGGCCGTGATCGTCTTCGTCTCATACCCTGTC
TCCAAGAAGGAGGACGAGATCTTGCTCATCTCCCAGTACAGGCCGCCGGT
TGCATCAGAGGTGATCGAGTCCCCCGCGGGTCTGGTCGACGCGGGAGAAG
ATGCGAAGGAAGCGGCAGAGCGTGAGCTGCTCGAGGAGACGGGGTTCTCG
GGCAAGGTTACGTCCGTGTCGCCGATAGTGCCCTGCGACCCGGGCATGAC
GGACGCCAACATGCGGTGATCGAGTCCCCCGCGGGTCTGGTCGACGCGGG
AGAAGATGCGAAGGAAGCGGCAGAGCGTGAGCTGCTCGAGGAGACGGGGT
TCTCGGGCAAGGTTACGTCCGTGTCGCCGATAGTGCCCTGCGACCCGGGC
ATGACGGACGCCAACATGCGGTTTGTCACCATAGAGGTTAACGGCGACTC
CGAGGAGAACCAGAACCCGAAAGCCCGCCCGGAAGACGGGTTTGTCACCA
TAGAGGTTAACGGCGACTCCGAGGAGAACCAGAACCCGAAAGCCCGCCCG
GAAGACGGAGAATTTATCACGCTCCGGAGGCTCCCGGCGAAGTCGATGCA
GGAAGGCCTGGACGATTTCGCAAACGCGGGATTCCAGGTCGACGCCCGCC
TGTACGCCATGGCTGTGGGCTACACGTTGGGGAGACGCGCTGCTGCGGCC
GGTGAAGGTGACTGCCCGCGGCGACGGCTGGGACGCGCCGTGGCGTCTTC
GCTGGTTGGTGTTGTGGTGGCGGCTACGTTGATGGTGGCGGTGGGTGGTG
CGAGGCGCGGCAGATCATAAAGAATTTATCACGCTCCGGAGGCTCCCGGC
GAAGTCGATGCAGGAAGGCCTGGACGATTTCGCAAACGCGGGATTCCAGG
TCGACGCCCGCCTGTACGCCATGGCTGTGGGCTACACGTTGGGGAGACGC
GCTGCTGCGGCCGGTGAAGGTGACTGCCCGCGGCGACGGCTGGGACGCGC
CGTGGCGTCTTCGCTGGTTGGTGTTGTGGTGGCGGCTACGTTGATGGTGG
CGGTGGGTGGTGCGAGGCGCGGCAGATCATAA
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