mRNA_E-siliculosus-1a_M_contig9.17016.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17016.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17016.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17016.1 vs. uniprot
Match: A0A6H5LCV9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCV9_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 1.300e-59
Identity = 139/197 (70.56%), Postives = 142/197 (72.08%), Query Frame = 1 
Query:    1 ADASNSSGDFTGPQRVRINNNSVAADISLSFWSLPASTPDSKSGGGRLTSKTVTKGAAAGGKSSCASTRKRARGGGTPQAVATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSVPSNPFGTGISHILSWKPAPRPNAAGSDGTGGSPATGSASTNTTPETGGKQEQHSNT 591
            AD SNSSGDFTGPQRVRIN+NSV ADISLSFWSLPASTPDSKSGGGRLTSKTVTKG AAGGKS+ ASTRKRARGGGTPQAV T                        XXXXXXXXXX                     DSVPSNPFGT ISHILSWKPAPR NAAGSDGTGGSP TGSASTNTTPE G KQEQHS+T
Sbjct:  101 ADVSNSSGDFTGPQRVRINSNSVPADISLSFWSLPASTPDSKSGGGRLTSKTVTKGTAAGGKSASASTRKRARGGGTPQAVETTVTTAATRAEARHQASKWSSGATAXXXXXXXXXXDPSAAAKTDRAAAAATAKV--DSVPSNPFGTDISHILSWKPAPRQNAAGSDGTGGSPTTGSASTNTTPEAGSKQEQHSST 295
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LCV9_9PHAE1.300e-5970.56Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:1066680..1067270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size591
Model size591
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936372.3502111-CDS-E-siliculosus-1a_M_contig9:1066679..10672701622936372.3502111-CDS-E-siliculosus-1a_M_contig9:1066679..1067270Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1066680..1067270 +
1696251047.9102678-CDS-E-siliculosus-1a_M_contig9:1066679..10672701696251047.9102678-CDS-E-siliculosus-1a_M_contig9:1066679..1067270Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1066680..1067270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17016.1prot_E-siliculosus-1a_M_contig9.17016.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 1066680..1067270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17016.1

>prot_E-siliculosus-1a_M_contig9.17016.1 ID=prot_E-siliculosus-1a_M_contig9.17016.1|Name=mRNA_E-siliculosus-1a_M_contig9.17016.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=197bp
ADASNSSGDFTGPQRVRINNNSVAADISLSFWSLPASTPDSKSGGGRLTS
KTVTKGAAAGGKSSCASTRKRARGGGTPQAVATAATTAATRAEQARQQAS
KWSSGATASTKATSSSASEPSAAAKTDRAAAAAQAAEADSVPSNPFGTGI
SHILSWKPAPRPNAAGSDGTGGSPATGSASTNTTPETGGKQEQHSNT
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mRNA from alignment at E-siliculosus-1a_M_contig9:1066680..1067270+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17016.1 ID=mRNA_E-siliculosus-1a_M_contig9.17016.1|Name=mRNA_E-siliculosus-1a_M_contig9.17016.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=591bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1066680..1067270+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCCGACGCCAGCAACAGCAGCGGCGACTTCACTGGCCCTCAGCGTGTCCG
CATCAACAACAACAGCGTCGCGGCCGACATCTCGCTCTCGTTCTGGTCGC
TGCCGGCGTCCACGCCAGACAGCAAGAGCGGCGGCGGCCGGCTCACGTCG
AAGACCGTTACGAAGGGCGCCGCAGCAGGCGGCAAGAGCTCGTGCGCGTC
GACGCGCAAGCGCGCTCGCGGCGGCGGAACACCGCAAGCAGTGGCAACAG
CAGCGACCACGGCAGCTACAAGAGCCGAACAGGCAAGGCAACAGGCCTCA
AAGTGGAGCAGTGGTGCTACCGCCAGCACCAAGGCTACTAGCAGCAGTGC
ATCCGAACCGAGCGCCGCTGCGAAGACGGACCGTGCGGCAGCAGCAGCAC
AAGCAGCAGAAGCAGATTCGGTCCCAAGTAATCCCTTCGGGACGGGCATA
TCTCACATCCTTAGCTGGAAGCCCGCTCCCCGACCGAATGCCGCCGGCTC
CGATGGCACCGGTGGCAGCCCAGCAACGGGATCCGCATCGACCAACACCA
CTCCAGAAACTGGCGGTAAGCAGGAGCAACACAGCAACACG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1066680..1067270+

>mRNA_E-siliculosus-1a_M_contig9.17016.1 ID=mRNA_E-siliculosus-1a_M_contig9.17016.1|Name=mRNA_E-siliculosus-1a_M_contig9.17016.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1182bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1066680..1067270+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCCGACGCCAGCAACAGCAGCGGCGACTTCACTGGCCCTCAGCGTGTCCG
CATCAACAACAACAGCGTCGCGGCCGACATCTCGCTCTCGTTCTGGTCGC
TGCCGGCGTCCACGCCAGACAGCAAGAGCGGCGGCGGCCGGCTCACGTCG
AAGACCGTTACGAAGGGCGCCGCAGCAGGCGGCAAGAGCTCGTGCGCGTC
GACGCGCAAGCGCGCTCGCGGCGGCGGAACACCGCAAGCAGTGGCAACAG
CAGCGACCACGGCAGCTACAAGAGCCGAACAGGCAAGGCAACAGGCCTCA
AAGTGGAGCAGTGGTGCTACCGCCAGCACCAAGGCTACTAGCAGCAGTGC
ATCCGAACCGAGCGCCGCTGCGAAGACGGACCGTGCGGCAGCAGCAGCAC
AAGCAGCAGAAGCAGATTCGGTCCCAAGTAATCCCTTCGGGACGGGCATA
TCTCACATCCTTAGCTGGAAGCCCGCTCCCCGACCGAATGCCGCCGGCTC
CGATGGCACCGGTGGCAGCCCAGCAACGGGATCCGCATCGACCAACACCA
CTCCAGAAACTGGCGGTAAGCAGGAGCAACACAGCAACACGGCCGACGCC
AGCAACAGCAGCGGCGACTTCACTGGCCCTCAGCGTGTCCGCATCAACAA
CAACAGCGTCGCGGCCGACATCTCGCTCTCGTTCTGGTCGCTGCCGGCGT
CCACGCCAGACAGCAAGAGCGGCGGCGGCCGGCTCACGTCGAAGACCGTT
ACGAAGGGCGCCGCAGCAGGCGGCAAGAGCTCGTGCGCGTCGACGCGCAA
GCGCGCTCGCGGCGGCGGAACACCGCAAGCAGTGGCAACAGCAGCGACCA
CGGCAGCTACAAGAGCCGAACAGGCAAGGCAACAGGCCTCAAAGTGGAGC
AGTGGTGCTACCGCCAGCACCAAGGCTACTAGCAGCAGTGCATCCGAACC
GAGCGCCGCTGCGAAGACGGACCGTGCGGCAGCAGCAGCACAAGCAGCAG
AAGCAGATTCGGTCCCAAGTAATCCCTTCGGGACGGGCATATCTCACATC
CTTAGCTGGAAGCCCGCTCCCCGACCGAATGCCGCCGGCTCCGATGGCAC
CGGTGGCAGCCCAGCAACGGGATCCGCATCGACCAACACCACTCCAGAAA
CTGGCGGTAAGCAGGAGCAACACAGCAACACG
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