mRNA_E-siliculosus-1a_M_contig9.16970.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16970.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.16970.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16970.1 vs. uniprot
Match: D7FWY5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY5_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 2.280e-24
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = -1 
Query:  612 AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 767
            AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN
Sbjct:   86 AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 137
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16970.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.980e-23
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = -1 
Query:  612 AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 767
            AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN
Sbjct:  170 AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16970.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.060e-23
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = -1 
Query:  612 AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 767
            AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGY FN
Sbjct:  130 AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16970.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 3.070e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = -1 
Query:  612 AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 767
            AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN
Sbjct:  326 AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16970.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 100 bits (249), Expect = 3.740e-22
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = -1 
Query:  612 AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 767
            AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDL+GA YTFN
Sbjct:  166 AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16970.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.050e-21
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = -1 
Query:  612 AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 767
            AMSEETQ SKRAIELNNGRAAQMGILALMVHEELNNKPY+INDLLGA YTFN
Sbjct:  167 AMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16970.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 97.8 bits (242), Expect = 1.720e-21
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = -1 
Query:  612 AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 767
            AMSEETQ SKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGA Y FN
Sbjct:  131 AMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16970.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 97.4 bits (241), Expect = 5.360e-21
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = -1 
Query:  612 AMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 767
            AMS ETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGA Y FN
Sbjct:  165 AMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16970.1 vs. uniprot
Match: D8LJH9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH9_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.090e-18
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = -1 
Query:  612 MSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 764
            MSEET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PY+INDLL A YTFN
Sbjct:   56 MSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 106
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16970.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 90.5 bits (223), Expect = 1.980e-18
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = -1 
Query:  612 MSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 764
            MS ETQASKRAIELNNGRAAQMGIL +MVHEEL+N+PY+ NDLLGA YTFN
Sbjct:  161 MSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWY5_ECTSI2.280e-24100.00Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JHT6_9PHAE1.980e-23100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDS8_9PHAE4.060e-2398.08LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LNK6_ECTSI3.070e-22100.00Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
FCPB_MACPY3.740e-2296.15Fucoxanthin-chlorophyll a-c binding protein B, chl... [more]
A0A6H5KCX6_9PHAE1.050e-2194.23LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI... [more]
FCPD_MACPY1.720e-2194.23Fucoxanthin-chlorophyll a-c binding protein D, chl... [more]
FCPC_MACPY5.360e-2194.23Fucoxanthin-chlorophyll a-c binding protein C, chl... [more]
D8LJH9_ECTSI1.090e-1880.39Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
FCPF_MACPY1.980e-1884.31Fucoxanthin-chlorophyll a-c binding protein F, chl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:506678..507444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size474
Model size768
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936372.0747056-CDS-E-siliculosus-1a_M_contig9:506677..5071511622936372.0747056-CDS-E-siliculosus-1a_M_contig9:506677..507151Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 506678..507151 +
1696251047.840208-CDS-E-siliculosus-1a_M_contig9:506677..5071511696251047.840208-CDS-E-siliculosus-1a_M_contig9:506677..507151Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 506678..507151 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936372.0953813-UTR-E-siliculosus-1a_M_contig9:507151..5074441622936372.0953813-UTR-E-siliculosus-1a_M_contig9:507151..507444Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 507152..507444 +
1696251047.8505595-UTR-E-siliculosus-1a_M_contig9:507151..5074441696251047.8505595-UTR-E-siliculosus-1a_M_contig9:507151..507444Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 507152..507444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16970.1prot_E-siliculosus-1a_M_contig9.16970.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 506678..507151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.16970.1

>prot_E-siliculosus-1a_M_contig9.16970.1 ID=prot_E-siliculosus-1a_M_contig9.16970.1|Name=mRNA_E-siliculosus-1a_M_contig9.16970.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=158bp
RHHPPAELTECNIPRTTPLKPNVDHCSVRSLHDSTRILQRTTRSSVCRGW
RKAKNTLILPFPPHCHGARKFTTCCQKSPAYLVASRLPLARTIATQPSTL
KSHASTSIATGTRETLQFNSSPSHLRKNLLTNRTCKRGCAQKSNGRKEDL
KNAHLSA*
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mRNA from alignment at E-siliculosus-1a_M_contig9:506678..507444+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.16970.1 ID=mRNA_E-siliculosus-1a_M_contig9.16970.1|Name=mRNA_E-siliculosus-1a_M_contig9.16970.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=767bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:506678..507444+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGGCACCACCCTCCTGCTGAGTTGACGGAATGCAATATTCCACGTACTAC
CCCGCTCAAGCCGAACGTCGACCATTGCTCTGTACGGTCTCTGCATGACA
GCACACGAATTCTGCAACGAACAACACGCAGCTCAGTTTGCAGGGGGTGG
CGTAAGGCAAAGAACACGCTTATCTTGCCCTTCCCACCCCACTGCCATGG
TGCGAGAAAATTTACGACTTGCTGTCAAAAAAGTCCCGCTTATTTGGTTG
CATCACGACTTCCTCTCGCAAGAACAATCGCAACGCAACCGTCTACACTC
AAAAGCCATGCCTCTACATCTATCGCAACCGGCACTCGAGAAACTCTACA
ATTCAATTCAAGTCCCTCCCATCTACGGAAAAACCTTCTGACCAACAGGA
CATGTAAGCGTGGTTGTGCTCAAAAGTCAAACGGTCGGAAGGAGGACTTA
AAAAATGCGCACCTCTCGGCGTAAAAAGGGCTGAAAAAATCGGATCCAAC
GAGTACTGGCAAACAATCATCATCCATCATCTTCCGAGACACAACACTAG
TGCAGCGCAACAACCATTCCTCCCTCTAAATTCCCTCGTTAAAAAGGTGT
GGGTGGATTTAGTTGAAGGTGTAGCCCGCGCCGAGGAGGTCGTTGATGAC
GTAGGGCTTGTTGTTGAGCTCCTCGTGCACCATGAGGGCGAGGATGCCCA
TCTGGGCGGCGCGGCCGTTGTTGAGCTCGATCGCGCGCTTGGAGGCCTGG
GTCTCCTCGGACATGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:506678..507444+

>mRNA_E-siliculosus-1a_M_contig9.16970.1 ID=mRNA_E-siliculosus-1a_M_contig9.16970.1|Name=mRNA_E-siliculosus-1a_M_contig9.16970.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=948bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:506678..507444+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGGCACCACCCTCCTGCTGAGTTGACGGAATGCAATATTCCACGTACTAC
CCCGCTCAAGCCGAACGTCGACCATTGCTCTGTACGGTCTCTGCATGACA
GCACACGAATTCTGCAACGAACAACACGCAGCTCAGTTTGCAGGGGGTGG
CGTAAGGCAAAGAACACGCTTATCTTGCCCTTCCCACCCCACTGCCATGG
TGCGAGAAAATTTACGACTTGCTGTCAAAAAAGTCCCGCTTATTTGGTTG
CATCACGACTTCCTCTCGCAAGAACAATCGCAACGCAACCGTCTACACTC
AAAAGCCATGCCTCTACATCTATCGCAACCGGCACTCGAGAAACTCTACA
ATTCAATTCAAGTCCCTCCCATCTACGGAAAAACCTTCTGACCAACAGGA
CATGTAAGCGTGGTTGTGCTCAAAAGTCAAACGGTCGGAAGGAGGACTTA
AAAAATGCGCACCTCTCGGCGTAACGGCACCACCCTCCTGCTGAGTTGAC
GGAATGCAATATTCCACGTACTACCCCGCTCAAGCCGAACGTCGACCATT
GCTCTGTACGGTCTCTGCATGACAGCACACGAATTCTGCAACGAACAACA
CGCAGCTCAGTTTGCAGGGGGTGGCGTAAGGCAAAGAACACGCTTATCTT
GCCCTTCCCACCCCACTGCCATGGTGCGAGAAAATTTACGACTTGCTGTC
AAAAAAGTCCCGCTTATTTGGTTGCATCACGACTTCCTCTCGCAAGAACA
ATCGCAACGCAACCGTCTACACTCAAAAGCCATGCCTCTACATCTATCGC
AACCGGCACTCGAGAAACTCTACAATTCAATTCAAGTCCCTCCCATCTAC
GGAAAAACCTTCTGACCAACAGGACATGTAAGCGTGGTTGTGCTCAAAAG
TCAAACGGTCGGAAGGAGGACTTAAAAAATGCGCACCTCTCGGCGTAA
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