prot_E-siliculosus-1a_M_contig88.16847.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig88.16847.1
Unique Nameprot_E-siliculosus-1a_M_contig88.16847.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length866
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16847.1 vs. uniprot
Match: D8LK95_ECTSI (KH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK95_ECTSI)

HSP 1 Score: 550 bits (1417), Expect = 6.370e-186
Identity = 362/399 (90.73%), Postives = 366/399 (91.73%), Query Frame = 0 
Query:  467 DVAGDIAQWAADNSRGGEFTKVLEAVRRDSGVVSVDTRAVLKQGRGKGARVQIDKVHVDIRAATPAQARVARALLQTHFKSRSELLRLEHARRSMEGSLTAFEARQSSHEAQCTREVSQGLRVQFASRPEWIGLLVGKAGSRIRGLRKSTGCSIEVIDGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQQPAPSPCRVVICGPDASSVQRAREQMELTEVRIAVNPQQASVLGRLPRTKLLDLRQQSQCMVVDL-QSGSACQGRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVTGVMAVRVIGPRPTVDSARLLLGVVLEYMDRERELREGDNVVREKLLDMQASFGHPGTARPAAWAAKAGRGGFGRRAPRPPGTSPNSTGENREANQWD 864
            DVAGDIAQWAADNSRGGEFTKVLEAVRRDSGVVSVDTRAVLKQGRGKGAR QIDKVHVDIRAATPAQARVARALLQTHFKSRSELLRLEHARRSMEGSL+AFE           REVSQGLRVQFASRPEWIGLLVGKAGSRIRGLRKSTGCSIEVIDG    XXXXXXXXXXXXXXXXXXXXXX     GQ PAPS CRVVICGPDA SVQRAREQMELTEVRIAVNPQQA+VLGRLPR KLLDLRQQSQCMVVDL QSGSACQGRQXXXXXXXXXXXXXXXXXXXXXXXXXX    GAVTGVM+VRVIGPRPTVDSARLLLGVVLEYMDRERELREGDNVVR KLLDMQASFGHPGTARPAAWAAKAGRGG+GRRAP PPGTSPNSTGENREANQ D
Sbjct:   73 DVAGDIAQWAADNSRGGEFTKVLEAVRRDSGVVSVDTRAVLKQGRGKGARAQIDKVHVDIRAATPAQARVARALLQTHFKSRSELLRLEHARRSMEGSLSAFE-----------REVSQGLRVQFASRPEWIGLLVGKAGSRIRGLRKSTGCSIEVIDGX---XXXXXXXXXXXXXXXXXXXXXXHKAARGQPPAPSSCRVVICGPDAGSVQRAREQMELTEVRIAVNPQQAAVLGRLPRAKLLDLRQQSQCMVVDLLQSGSACQGRQXXXXXXXXXXXXXXXXXXXXXXXXXX----GAVTGVMSVRVIGPRPTVDSARLLLGVVLEYMDRERELREGDNVVRGKLLDMQASFGHPGTARPAAWAAKAGRGGYGRRAP-PPGTSPNSTGENREANQRD 452
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16847.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK95_ECTSI6.370e-18690.73KH domain-containing protein n=1 Tax=Ectocarpus si... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 732..753
NoneNo IPR availableCOILSCoilCoilcoord: 222..247
NoneNo IPR availablePANTHERPTHR14445GRB10 INTERACTING GYF PROTEINcoord: 87..326
NoneNo IPR availablePANTHERPTHR14445:SF41coord: 87..326
NoneNo IPR availablePANTHERPTHR14445GRB10 INTERACTING GYF PROTEINcoord: 261..756
NoneNo IPR availablePANTHERPTHR14445:SF41coord: 261..756
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 586..684
score: 9.435
IPR004087K Homology domainSMARTSM00322kh_6coord: 585..689
e-value: 4.8E-4
score: 29.4
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 596..684
e-value: 2.7E-5
score: 23.9
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 595..684

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig88contigE-siliculosus-1a_M_contig88:610011..614359 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig88.16847.1mRNA_E-siliculosus-1a_M_contig88.16847.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig88 610011..614359 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig88.16847.1 ID=prot_E-siliculosus-1a_M_contig88.16847.1|Name=mRNA_E-siliculosus-1a_M_contig88.16847.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=866bp
MTDHATSSATQAKVHTTQPGRSGYKVRRHHASNKRDGCNGNNPLQNGPGS
ADGRGGSKTKKTGELGHAAPISSVPPLSSGTSPSSSLKQRPSLSVDSGVE
SGGGAGRGPSAPGRDKITAEHRSSHHVKNDAKTEAGSTAMSSCADQITQA
VVHNTTTPDSRASLDPCGGLKRDSNQQRILCLSRTRGHEASQQADSAEDG
QWSDASRGLLVRSSTTKAHGSKQQQQQQQQQQQQQQHQKQKENKQREPKK
NGSQKRTPKNQHQQEQHQQKQQEETKHEQAVGTSKASISPHTPDHQRGKE
ERTGPARTAKGLEFHELSPATSTDYEERSPLPEKNAGSREKGVDSIDSLC
SSLLEILAESEDVSSKAELATLTLGGRNKFLPTGKPLLEETTPATSAVSS
TSSSANSRKSDLSPAGSILPTPQKLVDHGQRDREKNRTRNRKKEEKKDND
GGGGDGGGGSLVLDTVDVAGDIAQWAADNSRGGEFTKVLEAVRRDSGVVS
VDTRAVLKQGRGKGARVQIDKVHVDIRAATPAQARVARALLQTHFKSRSE
LLRLEHARRSMEGSLTAFEARQSSHEAQCTREVSQGLRVQFASRPEWIGL
LVGKAGSRIRGLRKSTGCSIEVIDGAGGGGGGGRGGPDGSCGGGGGGGGG
GHKAAGGQQPAPSPCRVVICGPDASSVQRAREQMELTEVRIAVNPQQASV
LGRLPRTKLLDLRQQSQCMVVDLQSGSACQGRQQQQQQQQQQQQQQQQQQ
QNAPPTKNNSSSSGAVTGVMAVRVIGPRPTVDSARLLLGVVLEYMDRERE
LREGDNVVREKLLDMQASFGHPGTARPAAWAAKAGRGGFGRRAPRPPGTS
PNSTGENREANQWDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1
IPR004087KH_dom