mRNA_E-siliculosus-1a_M_contig86.16695.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16695.1
Unique NamemRNA_E-siliculosus-1a_M_contig86.16695.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig86.16695.1 vs. uniprot
Match: D8LLF3_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF3_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 1.580e-65
Identity = 112/130 (86.15%), Postives = 113/130 (86.92%), Query Frame = 1 
Query:  478 KSAQXXDKKDKKDEGRWDMLTDAYGRTYWQHSITGEWTYGFGGGLVSPVGTVNPSPMGYPGGAVFTPSPVPGGALYPFAAAPXAXXXXXXXDEKKM--GKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 861
            KSAQ  DK +KKDEGRWDMLTDAYGRTYWQHSITGEWTYG GGGLVSPVGTVNPSPMGYPGG VFTPSPVPGGALYPFA AP    XXXXX       GKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY
Sbjct:   30 KSAQSSDKMEKKDEGRWDMLTDAYGRTYWQHSITGEWTYGCGGGLVSPVGTVNPSPMGYPGGPVFTPSPVPGGALYPFAVAPHPKKXXXXXXXXXXXXGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 159
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig86.16695.1 vs. uniprot
Match: D8LLF4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF4_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 2.000e-56
Identity = 91/121 (75.21%), Postives = 99/121 (81.82%), Query Frame = 1 
Query:  499 KKDKKDEGRWDMLTDAYGRTYWQHSITGEWTYGFGGGLVSPVGTVNPSPMGYPGGAVFTPSPVPGGALYPFAAAPXAXXXXXXXDEKKMGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 861
            KKDKKDEG W+ LTD YGRTYWQHS TGEW +G+GGG V PVGTVNPSPMGYPGG VFTPSPVPGG L+P A A          ++K+ GKGWWETKYDE+GDRYWEHTVTKKTTYKDPYY
Sbjct:   29 KKDKKDEGSWEKLTDVYGRTYWQHSKTGEWHFGYGGGFVPPVGTVNPSPMGYPGGPVFTPSPVPGGTLFPVAVA---GPPGKKKEKKEKGKGWWETKYDEEGDRYWEHTVTKKTTYKDPYY 146
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig86.16695.1 vs. uniprot
Match: D8LLG2_ECTSI (WW domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LLG2_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 3.340e-42
Identity = 81/123 (65.85%), Postives = 89/123 (72.36%), Query Frame = 1 
Query:  499 KKDKKDEGRWDMLTDAYGRTYWQHSITGEWTYGFGGGLVSP-VGTVNPSPMGYPGGAVFTPSPVPGGALYPFAAAPXAXXXXXXXDEKK-MGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 861
            K+++KDEG+WDMLTD YGR YWQHS+TGEW Y +GGGL +P V  V P+PM  P G VFTP PV   A  P    P         DEKK  GKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY
Sbjct:   45 KEEEKDEGKWDMLTDVYGRAYWQHSVTGEWAYVYGGGLSAPPVVAVGPTPMVSPHGVVFTPPPVYAAAPNP--PLPTKKKDGDKQDEKKEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 165
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig86.16695.1 vs. uniprot
Match: D8LLG0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG0_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.750e-37
Identity = 79/122 (64.75%), Postives = 90/122 (73.77%), Query Frame = 1 
Query:  499 KKDKKDEGRWDMLTDAYGRTYWQHSITGEWTYGFGGGLVSP-VGTVNPSPMGYPGGAVFTPSPVPGGALYPFAAAPXAXXXXXXXDEKKMGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 861
            K+++KDEG+WDMLTD YGR YWQH++TGEW Y +GGGL +P V  V+P+PM  P G VFTP P               XXXXXXX   + GKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY
Sbjct:   45 KEEEKDEGKWDMLTDVYGRAYWQHNVTGEWAYVYGGGLSAPPVVAVSPTPMACPHGVVFTP-PXXXXXXXXXPLPTKXXXXXXXXXXXEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 165
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig86.16695.1 vs. uniprot
Match: A0A6H5KRF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF5_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.320e-22
Identity = 56/106 (52.83%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:  565 QHSITGEWTYGFGGGLVSP-VGTVNPSPMGYPGGAVFTPSPVPGGALYPFAAAPXAXXXXXXXD------EKKMGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 861
            QHS+TGEW Y +GGGL +P V  V+P+ + YP G V  P  V   A  P   A          D      +K+ GKGWWETK D+DGDRYWEHTVTKK TYKDPYY
Sbjct:   17 QHSVTGEWAYVYGGGLSAPPVVAVSPTSVVYPHGVVVMPXXVYAAAPNPPLPAKKKDVAGGQKDCDEKDEKKEKGKGWWETKSDKDGDRYWEHTVTKKITYKDPYY 122
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LLF3_ECTSI1.580e-6586.15WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
D8LLF4_ECTSI2.000e-5675.21WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
D8LLG2_ECTSI3.340e-4265.85WW domain-containing protein n=4 Tax=Ectocarpus Ta... [more]
D8LLG0_ECTSI1.750e-3764.75WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KRF5_9PHAE5.320e-2252.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:641666..644385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size477
Model size1693
Exons3
Ec32 orthologEc-27_002430.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16695.1prot_E-siliculosus-1a_M_contig86.16695.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig86 642053..643556 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936319.983468-UTR-E-siliculosus-1a_M_contig86:641665..6420521622936319.983468-UTR-E-siliculosus-1a_M_contig86:641665..642052Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 641666..642052 +
1696251023.683928-UTR-E-siliculosus-1a_M_contig86:641665..6420521696251023.683928-UTR-E-siliculosus-1a_M_contig86:641665..642052Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 641666..642052 +
1622936320.0544124-UTR-E-siliculosus-1a_M_contig86:643556..6443851622936320.0544124-UTR-E-siliculosus-1a_M_contig86:643556..644385Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 643557..644385 +
1696251023.723875-UTR-E-siliculosus-1a_M_contig86:643556..6443851696251023.723875-UTR-E-siliculosus-1a_M_contig86:643556..644385Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 643557..644385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936320.0071146-CDS-E-siliculosus-1a_M_contig86:642052..6421311622936320.0071146-CDS-E-siliculosus-1a_M_contig86:642052..642131Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 642053..642131 +
1696251023.6940088-CDS-E-siliculosus-1a_M_contig86:642052..6421311696251023.6940088-CDS-E-siliculosus-1a_M_contig86:642052..642131Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 642053..642131 +
1622936320.0206323-CDS-E-siliculosus-1a_M_contig86:642402..6424991622936320.0206323-CDS-E-siliculosus-1a_M_contig86:642402..642499Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 642403..642499 +
1696251023.703969-CDS-E-siliculosus-1a_M_contig86:642402..6424991696251023.703969-CDS-E-siliculosus-1a_M_contig86:642402..642499Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 642403..642499 +
1622936320.041861-CDS-E-siliculosus-1a_M_contig86:643255..6435561622936320.041861-CDS-E-siliculosus-1a_M_contig86:643255..643556Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 643256..643556 +
1696251023.7137065-CDS-E-siliculosus-1a_M_contig86:643255..6435561696251023.7137065-CDS-E-siliculosus-1a_M_contig86:643255..643556Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 643256..643556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16695.1

>prot_E-siliculosus-1a_M_contig86.16695.1 ID=prot_E-siliculosus-1a_M_contig86.16695.1|Name=mRNA_E-siliculosus-1a_M_contig86.16695.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=159bp
MSFFSNGFAVLANNRRRKEAKKAAKNGADDKSAQSSDKKDKKDEGRWDML
TDAYGRTYWQHSITGEWTYGFGGGLVSPVGTVNPSPMGYPGGAVFTPSPV
PGGALYPFAAAPPAKKKDDEKDEKKMGKGWWETKYDEDGDRYWEHTVTKK
TTYKDPYY*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig86:641666..644385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig86.16695.1 ID=mRNA_E-siliculosus-1a_M_contig86.16695.1|Name=mRNA_E-siliculosus-1a_M_contig86.16695.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2720bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:641666..644385+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGGAAATCCACCTCTGTATCTGACGACAGAAGCAAAAGCACCACCACCAC
CATCACCACCATCACCAACAAAAACCAACAACACTAACAATAGCCGAATA
ATCACAACACCAACGGGAGGGGATTGCGCCAGTCTTGGCGAGCACGCTCG
CTCCCTTCTTTCTCCTTACCTTAAGCGGGCGCATCGTGGCGGCGAAGAAG
TGGTAGTTCTCTCCCCTCTCGGTCTCACAACCTCATCCGACCGCACGCAC
ACGGAAACACACCAAGCACCAGGCCCAACCAGCACTCATACAAAGCATAC
ACCAAGCACACAGCAGCTTGGCAGTGCAACACCACCACCACCACCACCCC
AGCAGCAGCAACAACAGCAAGCACCACCAGCGAAAGCATGTCTTTCTTTT
CGAACGGATTCGCGGTGCTGGCCAACAACAGGCGCCGCAAGGAGGCCAAG
AAGGCGGCCAAGAATGGTAAGCAAGCCCCAGCCAGGCAGCCGTACGTGCG
TTTCGCTTCAACCTTTGGCTTTGCCTTGCTTTGCACACTTCCGACTGTCC
GCGCTTGTCTGCAACAACGACGCACCACTTTGTAGGGAACACATATAATA
TGCGTGCATGCAAATTTGTCGAGCCATTTATTTGTGGTCTGGGATGCAAT
GTTGTTGGAGCCTTCCTGGGTTCATGTTGACGTCTAACTACAGCGTGTAC
TGCGGTTGTTCCTGCTCAACCCTTCCTCCCACACCAGGTGCTGATGACAA
GAGCGCGCAGAGCTCTGACAAGAAGGACAAGAAAGACGAGGGAAGATGGG
ACATGCTCACTGACGCGTACGGCAGGACGTACTGGTGAGTGGCTTCGGGG
TATTTACACCTCGGGGTATTCCACGTTGCGATTTGCGATTTTGCTCACGG
CAGGCGTTTACTGGTTGCGTGTCGAATTGCACAGCGATAAGGAGCGTTCG
ATGGGTAGACTTTGTACCTGAGTGTTTATGCTGGTTTGGTTGGTGTTTGG
TGATGACCAATGTCGCAAACCCATTCCAACCGACGTACTTTGTGAAGGTA
CTTCGGTAGGAGCACCGCCCGCTGCTCTGACACGTACATACGCTGTAGGT
GCCATAATTTATTGCTGCGCTGTGGATCTCCCCTAAGCAGATTTTGAAAT
GATCATTACTCCACGACGAAGAAGATACAAATAAATCAAACGATACATAT
TCGGAAATCTCTCGACGATACCGCCGCCATTTTCGGCACCGTCACGCTCT
CTCTTCGCTGTGGAGCAATCGGCCTTTGAAAATCGATGAAGGGGGTGTGA
TATCTTACGCCACCTACGGGAAGCTGCATGTGAATCAATCTGCAGAGATG
GCATATGCACATACTTGCTTGTAGATGGCCTATGTAGGTGTAAACTGTGT
CTCGAAAGTAGTGTCTTCGGTTCAACAAGCATGCATTCACGCTTGCGTCC
ATTATCTACGTGACGGTACTACAGCAAGCAGTGATTAGAGGAAGGACACC
GCTTCTATGTGCCCCCCCCGCCGAACCTCCCGGTTGCCCTCAGCATCACC
TTCTCCTCTCCCGCATCAAACTTGACAAAAAAAAAAACAGGCAGCACAGC
ATCACAGGCGAGTGGACCTACGGCTTCGGCGGAGGCCTCGTCTCTCCCGT
TGGGACGGTCAACCCGTCGCCCATGGGCTACCCCGGCGGCGCGGTCTTCA
CGCCTTCGCCGGTGCCCGGTGGCGCGCTGTACCCTTTCGCCGCCGCCCCC
CCCGCCAAGAAAAAGGACGACGAAAAGGACGAGAAGAAGATGGGCAAGGG
ATGGTGGGAGACGAAGTACGACGAGGACGGGGACCGGTACTGGGAGCACA
CGGTGACCAAGAAGACCACCTACAAGGACCCCTACTACTGAACGAGTCTC
CTGCACATTTGTTGCGGAGTAGGAGGTAGCATGGATTTGGAGAGAGGCGC
TACTGCTGAATGAAGTAGTAGTATTTTGTTTACGATATCAACAAGCCAGG
GTTATTGATGCAGTGGTAACGAGGATGTGTACCTGAGGCGGAAAAGGTCC
TCCGCTGCTTGGTTGGTTTGTTGCGAAGGAATGTATGCTGAGCGTGGTGG
TTTATACAGTGAAAATAAAAGGCAGTCAAAACAACAAGTACTTGGGTGGT
GTGTTTAGATGGAGTTTCTGGGAATGAATGAATGCGGTTGGTTGTTTTTT
TGCAATGTTCTTCGAAGTACACGGGCGTACGTGTGATACAGGGTATTAAT
CCTTCGAGTGTGTACCGTGTCGTTGCTGGTGGTATGTTTACTTCCGTTGG
CTGTGTGTTGACTTTCAAACAAGAGTATTCGGCGGTAGATGCTGAAAAAA
TAAAGACAGATCAGAAGTTGTTGCAAGCTCTCGGCGTGTTATCGCTGAAC
GATTATTAGAGGGGTCGGCCTTGTTGGTGTCAGATTGGCCTTCGATTAGC
CGAGTGCTTCTTGCTCACCCTCCACCATGGTACGAACATGAATGTCTGAA
AAGGTGGGGGCAAGGTGACAAGAAGAGTAGTCTAGATGTAAATAGGAACC
TCCCTTGGCGGTGGAGTGCAATTTCGCTTCATCTTCTTTCCGGATGGCTG
TGATCGCCACATCACGTTGTTGATATGTTTGAGGTTTGATTTGGGGGAAG
GCTCTCACGATGGAGATGGGTGTGGATTTGGCGAAACGAATGCAGAGAAA
ATAACAATAAATGAGTTTTC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:641666..644385+

>mRNA_E-siliculosus-1a_M_contig86.16695.1 ID=mRNA_E-siliculosus-1a_M_contig86.16695.1|Name=mRNA_E-siliculosus-1a_M_contig86.16695.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=954bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:641666..644385+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTTTCTTTTCGAACGGATTCGCGGTGCTGGCCAACAACAGGCGCCG
CAAGGAGGCCAAGAAGGCGGCCAAGAATGATGTCTTTCTTTTCGAACGGA
TTCGCGGTGCTGGCCAACAACAGGCGCCGCAAGGAGGCCAAGAAGGCGGC
CAAGAATGGTGCTGATGACAAGAGCGCGCAGAGCTCTGACAAGAAGGACA
AGAAAGACGAGGGAAGATGGGACATGCTCACTGACGCGTACGGCAGGACG
TACTGGTGCTGATGACAAGAGCGCGCAGAGCTCTGACAAGAAGGACAAGA
AAGACGAGGGAAGATGGGACATGCTCACTGACGCGTACGGCAGGACGTAC
TGGCAGCACAGCATCACAGGCGAGTGGACCTACGGCTTCGGCGGAGGCCT
CGTCTCTCCCGTTGGGACGGTCAACCCGTCGCCCATGGGCTACCCCGGCG
GCGCGGTCTTCACGCCTTCGCCGGTGCCCGGTGGCGCGCTGTACCCTTTC
GCCGCCGCCCCCCCCGCCAAGAAAAAGGACGACGAAAAGGACGAGAAGAA
GATGGGCAAGGGATGGTGGGAGACGAAGTACGACGAGGACGGGGACCGGT
ACTGGGAGCACACGGTGACCAAGAAGACCACCTACAAGGACCCCTACTAC
TGAGCAGCACAGCATCACAGGCGAGTGGACCTACGGCTTCGGCGGAGGCC
TCGTCTCTCCCGTTGGGACGGTCAACCCGTCGCCCATGGGCTACCCCGGC
GGCGCGGTCTTCACGCCTTCGCCGGTGCCCGGTGGCGCGCTGTACCCTTT
CGCCGCCGCCCCCCCCGCCAAGAAAAAGGACGACGAAAAGGACGAGAAGA
AGATGGGCAAGGGATGGTGGGAGACGAAGTACGACGAGGACGGGGACCGG
TACTGGGAGCACACGGTGACCAAGAAGACCACCTACAAGGACCCCTACTA
CTGA
back to top