prot_E-siliculosus-1a_M_contig86.16666.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig86.16666.1
Unique Name	prot_E-siliculosus-1a_M_contig86.16666.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	228

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16666.1 vs. uniprot
Match: A0A6H5KVZ6_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVZ6_9PHAE)

HSP 1 Score: 429 bits (1102), Expect = 1.830e-151
Identity = 216/227 (95.15%), Postives = 219/227 (96.48%), Query Frame = 0

Query:    1 MGGGTTLAFGALPSHVTTTRELRSAGGVFSNIGIYPSSSTSNQQLPDTCRYAVSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGEFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPFHKY 227
            MGGGT LAFGALPSHVTTTRELRSAGGV  NIGI PS S S+QQLP+TCRYAVSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGE WQ ARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPFH+Y
Sbjct:    1 MGGGTMLAFGALPSHVTTTRELRSAGGVLCNIGICPSISRSHQQLPETCRYAVSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGELWQTARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPFHEY 227

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16666.1 vs. uniprot
Match: D8LBT8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT8_ECTSI)

HSP 1 Score: 343 bits (880), Expect = 1.770e-118
Identity = 170/172 (98.84%), Postives = 172/172 (100.00%), Query Frame = 0

Query:   56 MVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGEFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPFHKY 227
            MVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLG+FWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPFH+Y
Sbjct:    1 MVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGDFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPFHEY 172

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16666.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 184 bits (466), Expect = 6.270e-55
Identity = 96/175 (54.86%), Postives = 122/175 (69.71%), Query Frame = 0

Query:   50 RYAVSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGEFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 224
            R +V +MVG   ETGG+FDPLG + DE SL+RRR  ELKHGR+CMLAT GVLVQ++V  PD   + FSN RP+GAL QV  +RPV  + I+  +GL+ELT G +DY +    PG LG F  A +P+D       QL+ELK+GRLA +GI GML QE +T +GP+EQLL G  +PF
Sbjct:   40 RMSVEDMVGIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVHLPD---AVFSNPRPIGALLQVLDQRPVAAIQILLAIGLLELTAGAQDYANKA--PGDLGRFGDAFKPDDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPF 209

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16666.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.260e-49
Identity = 95/175 (54.29%), Postives = 118/175 (67.43%), Query Frame = 0

Query:   50 RYAVSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGEFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 224
            R AV+EM+G+  ET GVFDPLGLA DE SLYR R+ ELKHGRV MLA +G LVQSF   PD     FSN RPL AL QV+ ERPV    I   +G IELTIG++D  ++   PG +G F  A  P+D + +   QL+ELK+GRLA + I G   QE +T +GP+EQLL+G  +PF
Sbjct:   31 RMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPD---EVFSNPRPLAALAQVYSERPVAFWQIFLAIGAIELTIGKQD--TANRAPGDVG-FGAAFIPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPF 199

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16666.1 vs. uniprot
Match: A0A6H5JT49_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT49_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.650e-48
Identity = 99/193 (51.30%), Postives = 121/193 (62.69%), Query Frame = 0

Query:   37 SSSTSNQQLPDTCRYAVSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSN-TRPL----GALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGEFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 224
            SS+ S          ++ EM+GA  E+GG+FDPLG + DE SL+RRR  ELKHGRV MLA  G+LVQSFV FP       SN  RPL    G L        + LLG     G++ELTIG++DY   +  PG+LGEF   A+P D + W + Q+ ELKHGRLA LG+ G L QELVT EGPVEQLL G+I PF
Sbjct:   47 SSTRSRSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVHFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGT----GVVELTIGKQDY--VDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPF 233

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16666.1 vs. uniprot
Match: W7TRI0_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRI0_9STRA)

HSP 1 Score: 164 bits (415), Expect = 8.970e-48
Identity = 89/173 (51.45%), Postives = 115/173 (66.47%), Query Frame = 0

Query:   52 AVSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGEFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 224
            + S+M+G   ETGG+FDPLG + DE SLY+ R  ELKHGRV MLA +G LVQS+   PD     FSN RPLGAL Q+  ERP+ +L IV  + LIE+T G++D    E  PG+LG F +A +PE        QL+ELK+GRLA + I G   QEL+T +GP+EQ+  G I+PF
Sbjct:    2 SASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSYTHLPD---DVFSNPRPLGALGQLLSERPLAILQIVIAITLIEVTSGKQD---PELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPF 168

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16666.1 vs. uniprot
Match: D5KBP8_ELYCH (Light harvesting complex protein 3 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=D5KBP8_ELYCH)

HSP 1 Score: 162 bits (410), Expect = 2.140e-47
Identity = 82/149 (55.03%), Postives = 107/149 (71.81%), Query Frame = 0

Query:   67 FDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGEFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQ 215
            +DPLG + DE SL+RRRV ELKHGR+CMLAT+GV VQ+ +  PDP    FSN RP+GAL QV+ ERP+ +  I+  +G IEL+IG++DY +    PG LG F   A+P DP  W + QL+ELK+GRLA + I GML QE +T +GP+EQ
Sbjct:    1 WDPLGFSKDEASLFRRRVVELKHGRICMLATLGVFVQNSIHLPDP---VFSNPRPIGALLQVFAERPIAIWQIILAIGAIELSIGKQDYENKA--PGDLGSFGDFAKPSDPIEWEKVQLRELKNGRLAMMAIMGMLVQEGLTKQGPLEQ 144

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16666.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 162 bits (410), Expect = 7.600e-47
Identity = 88/175 (50.29%), Postives = 113/175 (64.57%), Query Frame = 0

Query:   50 RYAVSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGEFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 224
            R AV +M+GA  ET GV+DPL L+ D+ +L++ R  ELKHGRV MLAT+GVLVQSF   PDP    FSN RPL AL Q+  ERPV    I   +G  EL+IG++DY +    PG +  F    +P D   W + QL+ELK+GRLA +   GM  QE +T +GP+EQL  G I+PF
Sbjct:   12 RMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDP---VFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKA--PGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPF 181

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16666.1 vs. uniprot
Match: A0A0G4FFG9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FFG9_VITBC)

HSP 1 Score: 163 bits (412), Expect = 8.540e-47
Identity = 88/179 (49.16%), Postives = 118/179 (65.92%), Query Frame = 0

Query:   46 PDTCRYAVSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGEFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 224
            P T   AV ++ GA  ETGGV+DPLGL+ +E +L   R AELKHGRVCM+A +GV+VQ++ Q PDP    F+N RPL A+ QVW++RP  ++ I+  +G  EL   R+   S E  PG L  F  A RP D   +   Q +ELK+GRLA +GI+GML QE +T +GP+EQ+  G I+PF
Sbjct:   36 PATTMGAVDQLAGADVETGGVWDPLGLSQNEDALSLYRAAELKHGRVCMMAVLGVIVQTYFQLPDP---VFNNPRPLEAIVQVWQQRPEAIIQILLAIGATELYFLRQ---SPEDPPGSLQNFGAAFRPRDEAKFEELQRKELKNGRLAMIGISGMLVQEALTGQGPLEQIQVGHISPF 208

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BLAST of mRNA_E-siliculosus-1a_M_contig86.16666.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC)

HSP 1 Score: 157 bits (396), Expect = 2.130e-44
Identity = 91/178 (51.12%), Postives = 115/178 (64.61%), Query Frame = 0

Query:   48 TCRYAVSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSF-VQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGEFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 224
            T + +V EM+GA  ETGGVFDPL  + DE SL+RRR  ELKHGR+ MLA +G  VQS  V  PDP    FS  RPL AL +V  ERP     IVA +  IEL  GR+DY +    PG LG F  + +  DP+ +R+ QL+ELK+GRLA +GI GM+ QE +T +   EQ+  G+INPF
Sbjct:   41 TPKMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDP---VFSEPRPLSALTKVLTERPWAAAQIVAAIAAIELGPGRQDYENKA--PGDLGYFGDSFKNSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINPF 213

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig86.16666.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig86.16666.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KVZ6_9PHAE	1.830e-151	95.15	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D8LBT8_ECTSI	1.770e-118	98.84	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A835ZAI4_9STRA	6.270e-55	54.86	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
W7U405_9STRA	1.260e-49	54.29	Light-harvesting protein n=2 Tax=Monodopsidaceae T...	[more]
A0A6H5JT49_9PHAE	1.650e-48	51.30	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
W7TRI0_9STRA	8.970e-48	51.45	Light-harvesting protein n=1 Tax=Nannochloropsis g...	[more]
D5KBP8_ELYCH	2.140e-47	55.03	Light harvesting complex protein 3 (Fragment) n=4 ...	[more]
A0A835ZIK7_9STRA	7.600e-47	50.29	Chlorophyll a/b-binding protein domain-containing ...	[more]
A0A0G4FFG9_VITBC	8.540e-47	49.16	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]
A0A0G4GDB0_VITBC	2.130e-44	51.12	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 54..227 e-value: 2.9E-33 score: 117.2
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 58..205 e-value: 1.2E-26 score: 94.2
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 66..219 coord: 63..107
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 64..225

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig86	contig	E-siliculosus-1a_M_contig86:414824..418241 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig86.16666.1	mRNA_E-siliculosus-1a_M_contig86.16666.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig86 414748..419652 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig86.16666.1 ID=prot_E-siliculosus-1a_M_contig86.16666.1|Name=mRNA_E-siliculosus-1a_M_contig86.16666.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=228bp
MGGGTTLAFGALPSHVTTTRELRSAGGVFSNIGIYPSSSTSNQQLPDTCR
YAVSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGV
LVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTI
GREDYGSSEAEPGKLGEFWQAARPEDPQLWRRRQLQELKHGRLASLGITG
MLAQELVTHEGPVEQLLKGDINPFHKY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf