mRNA_E-siliculosus-1a_M_contig85.16607.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig85.16607.1
Unique NamemRNA_E-siliculosus-1a_M_contig85.16607.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig85.16607.1 vs. uniprot
Match: D7FWU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU0_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 3.340e-100
Identity = 307/329 (93.31%), Postives = 312/329 (94.83%), Query Frame = 1 
Query:    1 METTILNPLTSNKTVINHLMEYADRNQYLFFATVCRGWSRAWGGRPAVTRAVTTRTSVSQLSYSFHCGLRRTKGICETAAKFGRLDLLQCAVLNGCPIGKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRDPDSIEKETGQETDGVAEGCPPPDADMGPAGPEPIRQDLTTAQSSSIEMHDPTPDELERARKYCAIHAAIYGDDAPPLEIEEALLRLD-LFSDEDY 984
            ME T+LNPLTSNKTV+NHLMEY D NQYLFFATVCRGWSRAWG RPAVTRA T  TSVSQLS+SFHCGLRRTKGICETAAK GRLDLLQCAVLNGCPIGKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRDPDSIEKETGQETDGVAEGCPPPDA+M PAGPEPIRQD TTAQSSS+EMHD TPDELERARK CA HA IYGDDAPPLEIEEAL RLD L SDEDY
Sbjct:    1 MEKTMLNPLTSNKTVVNHLMEYVDHNQYLFFATVCRGWSRAWGERPAVTRAATNGTSVSQLSFSFHCGLRRTKGICETAAKLGRLDLLQCAVLNGCPIGKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRDPDSIEKETGQETDGVAEGCPPPDAEMSPAGPEPIRQDFTTAQSSSLEMHDLTPDELERARKDCAFHAVIYGDDAPPLEIEEALRRLDPLCSDEDY 329
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig85.16607.1 vs. uniprot
Match: A0A6H5JGL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGL7_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 6.960e-76
Identity = 269/349 (77.08%), Postives = 279/349 (79.94%), Query Frame = 1 
Query:    1 METTILNPLTSNKTVINHLMEYADRNQYLFFATVCRGWSRAWGGRPAVTRAVTTRTSVSQLSYSFHCGLRRTKGICETAAKFGRLDLLQCAVLNGCPIGKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------PRDPDSIEKETGQETDGVAEGCPPPDADMGPAGPEPIRQDLTTAQSSSIEMHDPTPDELERARKYCAIHAAIYGDDAPP 930
            METT+LNPLTSN TV+NHLMEYAD NQY+F ATVC GWSRA GGRPAVTRAVTTRT VSQLSYS HC L  TKGIC TAAK GRLD LQC +LNGCPIGKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            XXXXXXX                                       PRDP ++EKETGQETDGVAEGCPPPDA+M  AGPEPIRQ+ TTAQSSS+EMHDPTPDELERARKYCA+HA IYGDDAPP
Sbjct:    1 METTMLNPLTSNNTVVNHLMEYADHNQYVFLATVCMGWSRACGGRPAVTRAVTTRTLVSQLSYSLHCSLPGTKGICATAAKLGRLDRLQCTMLNGCPIGKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAARGHEDTYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRVLQFCLENGFPRDPGNVEKETGQETDGVAEGCPPPDAEMSTAGPEPIRQNFTTAQSSSLEMHDPTPDELERARKYCALHAVIYGDDAPP 349
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig85.16607.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.380e-22
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:   43 VINHLMEYADRNQYLFFATVCRGWSRAWGGRPAVTRAVTTRTSVSQLSYSFHCGLRRTKGICETAAKFGRLDLLQCAVLNGCP 291
            +++ + E+ D NQYLFFA+V RGW   WG RP VT+A+T  TSVSQLS SF CGLRRT  +CET A  GRLDLL+ A   GCP
Sbjct:   11 IVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCP 93
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig85.16607.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.640e-22
Identity = 48/82 (58.54%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:   43 VINHLMEYADRNQYLFFATVCRGWSRAWGGRPAVTRAVTTRTSVSQLSYSFHCGLRRTKGICETAAKFGRLDLLQCAVLNGC 288
            +++ + E+ D NQYLFFA+V RGW   WG RP VT+A+T  TSV QLS SF CGLRRT  +CET A  GRLDLL+ A   GC
Sbjct:    9 IVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGC 90
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig85.16607.1 vs. uniprot
Match: A0A6H5L0L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 8.840e-7
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:   46 INHLMEYADRNQYLFFATVCRGWSRAWGGRPAVTRAVTTRTSVSQLSYSFHCGL----RRTKGICETAAKFGRLDLLQCAVLNGC 288
            ++++ E+  ++QYLF   V + + RAWG R  VTR V   TSV QL       L    RRT  IC  AA+FGRLDLL+ A  + C
Sbjct:    1 MSYIAEFV-QDQYLFIGPVSKDFRRAWGPRATVTRPVVADTSVKQLRCCLKLDLPLRIRRTS-ICNAAARFGRLDLLELAQESAC 83
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig85.16607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FWU0_ECTSI3.340e-10093.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGL7_9PHAE6.960e-7677.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI1.380e-2260.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0J7_9PHAE3.640e-2258.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0L3_9PHAE8.840e-743.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig85contigE-siliculosus-1a_M_contig85:428131..429117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size987
Model size987
Exons1
Ec32 orthologEc-13_001200.1
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko04090
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2AMK4@1,2RZCC@2759
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
KEGG koko:K06052
Seed eggNOG ortholog2880.D7FJY0
Seed ortholog evalue1.9e-16
Seed ortholog score93.6
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936302.838935-CDS-E-siliculosus-1a_M_contig85:428130..4291171622936302.838935-CDS-E-siliculosus-1a_M_contig85:428130..429117Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 428131..429117 -
1696251016.1112473-CDS-E-siliculosus-1a_M_contig85:428130..4291171696251016.1112473-CDS-E-siliculosus-1a_M_contig85:428130..429117Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 428131..429117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig85.16607.1prot_E-siliculosus-1a_M_contig85.16607.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig85 428131..429117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig85.16607.1

>prot_E-siliculosus-1a_M_contig85.16607.1 ID=prot_E-siliculosus-1a_M_contig85.16607.1|Name=mRNA_E-siliculosus-1a_M_contig85.16607.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=329bp
METTILNPLTSNKTVINHLMEYADRNQYLFFATVCRGWSRAWGGRPAVTR
AVTTRTSVSQLSYSFHCGLRRTKGICETAAKFGRLDLLQCAVLNGCPIGK
MVCAEAALRGHLGIIWWARTYGSEWDESTCSAAASGRHLKILQYCREHGC
PWDAGTTASAARCGSLSVLKWARENGCEWDEDTCTSAAFGGHLEILMWCR
KQGCGWSEETTAVAAARGHWGVLQFCLENGCPRDPDSIEKETGQETDGVA
EGCPPPDADMGPAGPEPIRQDLTTAQSSSIEMHDPTPDELERARKYCAIH
AAIYGDDAPPLEIEEALLRLDLFSDEDY*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig85:428131..429117-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig85.16607.1 ID=mRNA_E-siliculosus-1a_M_contig85.16607.1|Name=mRNA_E-siliculosus-1a_M_contig85.16607.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=987bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig85:428131..429117- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGACGACCATTCTCAACCCTCTCACCAGCAACAAGACCGTCATCAA
CCACCTGATGGAGTACGCAGATCGCAATCAATACCTGTTCTTCGCGACCG
TGTGCAGGGGTTGGTCTCGCGCGTGGGGCGGGCGGCCTGCCGTCACTCGA
GCCGTAACGACCAGAACGTCGGTGTCCCAGCTATCCTACAGCTTCCACTG
TGGCCTCCGCAGAACCAAAGGAATCTGCGAGACCGCCGCCAAGTTCGGCA
GGCTAGATCTCCTTCAGTGCGCCGTGCTGAACGGTTGCCCGATCGGGAAG
ATGGTATGCGCCGAGGCGGCCTTGCGTGGACACCTGGGGATCATATGGTG
GGCGAGGACGTACGGCTCCGAGTGGGACGAGAGCACCTGCTCGGCAGCCG
CCAGCGGGAGACACCTGAAAATCCTCCAATACTGTCGGGAGCACGGGTGC
CCGTGGGACGCCGGAACAACCGCCTCAGCCGCGCGGTGCGGGAGTCTCAG
CGTGCTCAAGTGGGCCAGAGAAAATGGTTGCGAGTGGGACGAAGACACAT
GCACGTCCGCGGCCTTCGGAGGACATCTCGAGATCCTGATGTGGTGCCGA
AAACAAGGGTGCGGGTGGAGCGAAGAGACTACCGCTGTCGCCGCCGCTCG
GGGTCACTGGGGCGTTCTCCAGTTCTGCCTCGAGAACGGGTGCCCCCGTG
ACCCCGACAGTATTGAGAAGGAGACGGGACAGGAAACGGATGGCGTGGCC
GAAGGATGTCCACCACCAGACGCAGACATGGGTCCGGCCGGGCCCGAGCC
AATCCGGCAAGACCTCACCACGGCGCAGTCGTCGTCGATTGAGATGCATG
ACCCAACCCCCGATGAGCTGGAACGGGCCAGGAAGTACTGCGCAATCCAT
GCGGCCATCTACGGCGATGACGCGCCGCCTTTGGAGATCGAGGAGGCCTT
GTTGCGCCTCGATCTATTTAGCGATGAAGACTACTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig85:428131..429117-

>mRNA_E-siliculosus-1a_M_contig85.16607.1 ID=mRNA_E-siliculosus-1a_M_contig85.16607.1|Name=mRNA_E-siliculosus-1a_M_contig85.16607.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1974bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig85:428131..429117- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGACGACCATTCTCAACCCTCTCACCAGCAACAAGACCGTCATCAA
CCACCTGATGGAGTACGCAGATCGCAATCAATACCTGTTCTTCGCGACCG
TGTGCAGGGGTTGGTCTCGCGCGTGGGGCGGGCGGCCTGCCGTCACTCGA
GCCGTAACGACCAGAACGTCGGTGTCCCAGCTATCCTACAGCTTCCACTG
TGGCCTCCGCAGAACCAAAGGAATCTGCGAGACCGCCGCCAAGTTCGGCA
GGCTAGATCTCCTTCAGTGCGCCGTGCTGAACGGTTGCCCGATCGGGAAG
ATGGTATGCGCCGAGGCGGCCTTGCGTGGACACCTGGGGATCATATGGTG
GGCGAGGACGTACGGCTCCGAGTGGGACGAGAGCACCTGCTCGGCAGCCG
CCAGCGGGAGACACCTGAAAATCCTCCAATACTGTCGGGAGCACGGGTGC
CCGTGGGACGCCGGAACAACCGCCTCAGCCGCGCGGTGCGGGAGTCTCAG
CGTGCTCAAGTGGGCCAGAGAAAATGGTTGCGAGTGGGACGAAGACACAT
GCACGTCCGCGGCCTTCGGAGGACATCTCGAGATCCTGATGTGGTGCCGA
AAACAAGGGTGCGGGTGGAGCGAAGAGACTACCGCTGTCGCCGCCGCTCG
GGGTCACTGGGGCGTTCTCCAGTTCTGCCTCGAGAACGGGTGCCCCCGTG
ACCCCGACAGTATTGAGAAGGAGACGGGACAGGAAACGGATGGCGTGGCC
GAAGGATGTCCACCACCAGACGCAGACATGGGTCCGGCCGGGCCCGAGCC
AATCCGGCAAGACCTCACCACGGCGCAGTCGTCGTCGATTGAGATGCATG
ACCCAACCCCCGATGAGCTGGAACGGGCCAGGAAGTACTGCGCAATCCAT
GCGGCCATCTACGGCGATGACGCGCCGCCTTTGGAGATCGAGGAGGCCTT
GTTGCGCCTCGATCTATTTAGCGATGAAGACTACTGAATGGAGACGACCA
TTCTCAACCCTCTCACCAGCAACAAGACCGTCATCAACCACCTGATGGAG
TACGCAGATCGCAATCAATACCTGTTCTTCGCGACCGTGTGCAGGGGTTG
GTCTCGCGCGTGGGGCGGGCGGCCTGCCGTCACTCGAGCCGTAACGACCA
GAACGTCGGTGTCCCAGCTATCCTACAGCTTCCACTGTGGCCTCCGCAGA
ACCAAAGGAATCTGCGAGACCGCCGCCAAGTTCGGCAGGCTAGATCTCCT
TCAGTGCGCCGTGCTGAACGGTTGCCCGATCGGGAAGATGGTATGCGCCG
AGGCGGCCTTGCGTGGACACCTGGGGATCATATGGTGGGCGAGGACGTAC
GGCTCCGAGTGGGACGAGAGCACCTGCTCGGCAGCCGCCAGCGGGAGACA
CCTGAAAATCCTCCAATACTGTCGGGAGCACGGGTGCCCGTGGGACGCCG
GAACAACCGCCTCAGCCGCGCGGTGCGGGAGTCTCAGCGTGCTCAAGTGG
GCCAGAGAAAATGGTTGCGAGTGGGACGAAGACACATGCACGTCCGCGGC
CTTCGGAGGACATCTCGAGATCCTGATGTGGTGCCGAAAACAAGGGTGCG
GGTGGAGCGAAGAGACTACCGCTGTCGCCGCCGCTCGGGGTCACTGGGGC
GTTCTCCAGTTCTGCCTCGAGAACGGGTGCCCCCGTGACCCCGACAGTAT
TGAGAAGGAGACGGGACAGGAAACGGATGGCGTGGCCGAAGGATGTCCAC
CACCAGACGCAGACATGGGTCCGGCCGGGCCCGAGCCAATCCGGCAAGAC
CTCACCACGGCGCAGTCGTCGTCGATTGAGATGCATGACCCAACCCCCGA
TGAGCTGGAACGGGCCAGGAAGTACTGCGCAATCCATGCGGCCATCTACG
GCGATGACGCGCCGCCTTTGGAGATCGAGGAGGCCTTGTTGCGCCTCGAT
CTATTTAGCGATGAAGACTACTGA
back to top