mRNA_E-siliculosus-1a_M_contig84.16566.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig84.16566.1
Unique NamemRNA_E-siliculosus-1a_M_contig84.16566.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig84contigE-siliculosus-1a_M_contig84:674057..677156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size288
Model size3100
Exons1
Ec32 orthologEc-15_001100.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig84.16566.1prot_E-siliculosus-1a_M_contig84.16566.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig84 676707..676994 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936294.4681082-UTR-E-siliculosus-1a_M_contig84:674056..6767061622936294.4681082-UTR-E-siliculosus-1a_M_contig84:674056..676706Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 674057..676706 +
1696251012.4193208-UTR-E-siliculosus-1a_M_contig84:674056..6767061696251012.4193208-UTR-E-siliculosus-1a_M_contig84:674056..676706Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 674057..676706 +
1622936294.498244-UTR-E-siliculosus-1a_M_contig84:676994..6771561622936294.498244-UTR-E-siliculosus-1a_M_contig84:676994..677156Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 676995..677156 +
1696251012.4419844-UTR-E-siliculosus-1a_M_contig84:676994..6771561696251012.4419844-UTR-E-siliculosus-1a_M_contig84:676994..677156Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 676995..677156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936294.48427-CDS-E-siliculosus-1a_M_contig84:676706..6769941622936294.48427-CDS-E-siliculosus-1a_M_contig84:676706..676994Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 676707..676994 +
1696251012.4301538-CDS-E-siliculosus-1a_M_contig84:676706..6769941696251012.4301538-CDS-E-siliculosus-1a_M_contig84:676706..676994Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 676707..676994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig84.16566.1

>prot_E-siliculosus-1a_M_contig84.16566.1 ID=prot_E-siliculosus-1a_M_contig84.16566.1|Name=mRNA_E-siliculosus-1a_M_contig84.16566.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=96bp
MRKSSCDSMSRGMMIVTKPTPALEISPEPLVVRLGRFGEAKSCRRKAQAL
RLTRLAWLPTRSPMSTTWRLLLSKFDGFGRFTDGEGLTFVLPVPV*
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mRNA from alignment at E-siliculosus-1a_M_contig84:674057..677156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig84.16566.1 ID=mRNA_E-siliculosus-1a_M_contig84.16566.1|Name=mRNA_E-siliculosus-1a_M_contig84.16566.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3100bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:674057..677156+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGGGCGGTGGTGGTTGCACGCGTCGAATGCGCGACACGAAGAGGATTCAA
AACTGCTGGCTGGTGACGACTTAGGTGTTGGTCTTGCCTGTGGGGTGGTC
GGGTGGATGGTGTATCACGATGACGCTGCGCTGGGTTTCGAGATGTTGAA
GATAAGATGGATGCATCATGCGCACCATGCAGCCGTGGTGGTATGTCAAG
GGTAGTAGGAGAGAGACCAAGCGAGGTTCTAGCGAAGATTCGGGTTACTG
CGTGTGGAGTTTGCCGGGTGTTTTGAGGGGGGATGGGGAGGAAAGGTGTA
TGATAAGATACGATGGAAAAAATGTGGCGCAAAAAGAGTATGGCTGGCGG
TGACTTTGTAAGCAAGACTGGTGCGGGCAACAAAATTCAGATACATCCCT
TCCGTCTGTCTTGCGGCTATGCGAACAAAGGGTCATCTACAGCTGTGTAG
CCGAGACTTTTGGGCGGCGAACAAGCTACATGTGATGGTAGAAAAAAAAT
GTCCTATTTGTCCTTCTGTGCGGTATTGGTTCCCTGTTCGTGCGTGGAGA
GGGGATGATGATGATGATGATGATGGTGTTGAAACTAACTTTGGCGGCGG
GGGGATCCGGGATTCGGCGTCTGGCGCTCCGGTGGGGGGCGATGTTCGCG
TGTTAATGGGGGGAGGGCGGTGGAGCTAGGACTGTGTGCGAGTATTTTAG
ACGTGTGGGGTGCACCCGAGGGCGCGGGGGGGGGGACGTGCGAGCGACAT
ACAACACAGCAATATATTCCTCTCCCTGTGGTGATGATGGCGATAGTTAA
TTTTGTAGACCCTTCTGTCAGCTGCAGCGGCAGCAGCCGGCCGGAGGCGG
AGACGATGGAGGTATGGGAGTACCCCCCCCCTACCAACGGGCCGTGTTCC
AGAAGATGAACGATGGGACGCCACTATCCGTTAGTTGTGGCGGCCGGGTC
GCGGGGGGGGGGGGTTCTCTCTCTCCGTGCACACAGGTGGCACACGACAT
TGCCGACCACGCGGCGTGGGGGTTGCATCATATCGTCGAGCACTTGTTTG
ATTTGGGTTACCGTTGTTGTTGACTTGGCAGGCAGGGGATTGCCGGGCAC
AGCAGTTTCACGAGTGAGTGATCGTCGGGTGCTTGTTGTCTGTCCTCAGT
TGGCGTGATCGGCAGAGATGTGGTGTGCATCTGCTTCCTCTTGGGCGGGG
GTCGATATCGTGCGTGCGAGAGAGAGACAGAGACAGAAAAACGGCACCAT
GTGAAGCACCAGGACAAGGCTGTGGGACGAAAGCAAGTAGGGTAAGACCT
TCGGAGGACGGGGACCGACGCACTGGAAAGAGCGAAAAAGGCTTTTTTGT
TTTTTGGTCTTATTTCCTTTTTTTTTGGGGTCGGAGATGATTGTTTTTTT
GGTATGTTCTAGTTGTTTGTCGAGGTTCTGTATCAGTCTTGCCCATTCTC
TCGACTCTCAGTGGCAGCCGCAGCGGCGGCGGCGGCGGGCCATTGTCTAG
GTTTGTTTGATGTAATTGTCTCTTTTCTGTAGTTTTAATGGAGATTGGGG
CGGGCGGATGGGTGGATGGGTGGATTCGCTTGCTGCACGTGCTGTTGGGT
GGCGTAGCTTTTCTTGTTGCTGCTGCCACCCGTGATAGACTTTATGGTGA
CGTATGCGTACGCCGTTATGAACTGACGGCATGCAGCGTGCACTGACTCA
TGATTAGCGCAGCAGCCAGCCCCCCCTTGAAGCCGGAGACGGTGGGCATT
TGTAGGAGTTCGGAGCTACTGCTCTACGTACCCACGCGGAGGGGGCACGC
GCTCGGAACCCCCCCCTCCCCTCCCCTGCCGCGGAGCCCGTTTTCGTGGT
GTTCGCACTGTATATTCGGCTCCTCTTGGATATGGGATTGCAAAGCTTGC
CTGACGTGCATCGGATTGCGTTGAAAACGTACTACTACTAGTAGTCAAGT
CGCGAGGGACTTGGGTTAGAGGCTCGTATCGCGAGGGTTGGAAGTTAGTC
GCTGCTTGCCGCTGTCATGTTCGACATTTCAGAGCCGTTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCGTCCTTGTTACTAACCGGCAGCAGCTAGCTGT
GTGGCAATATTGTGGTCATGAGTTTGTTCGGGCCTGGGTTCTGTTCGTAA
TCGATCCCGAAGGCGCGGGGTGTTGGGCCGGAGGTTGTGGGAGTGGCGCC
CGCCGGATCATGCGCTCCATAGCCGAGTTCTCCCTCTCTGCCGCCCCGGG
GGGCTTCGGTTTTGGTTACGTATTACCCCCCTCCCCCGGTGTCACCAAAG
AAATCGCGGTGCCTCTGATTCTTGTCTTTGTTCTCCTCCTTGGTTCCTTG
AGAGGGGGAGAAGAACCAGATTTAAGAAGAAAGTAATTCTATTCAAGAAA
ATGTAGGGTCTCCACACATGCGTAGGCGGGGGCGTGAAAGCGGGGGTCGG
GGAAGGGGGAGGGGCGGCTCGAGAGGGCTAGGCTTCGGTTCTCATCATGA
CTCGACTGGGTGCCCACAATATTTAGGTAAAAAAAAGTGTACATTTTTGT
AGATTGTTCCGATGTTGTCGTGACCCACCCCCACCCCCACCCGTCCCCTT
TTCTACACAAATTGCGGGGACCCCTGTGGAGGAATGTTGTTGTCGGGACG
ATGAGAAAAAGCAGCTGCGATAGCATGAGCAGAGGGATGATGATAGTAAC
AAAACCCACGCCAGCTCTCGAGATTAGCCCAGAGCCGTTAGTAGTGCGTT
TAGGTCGATTTGGCGAGGCCAAGTCTTGCCGGCGCAAAGCGCAAGCTTTG
CGGCTGACTCGACTTGCATGGTTGCCGACTCGTAGTCCTATGTCCACCAC
GTGGCGCTTGTTGTTGTCGAAATTCGATGGATTTGGGCGATTCACTGATG
GCGAGGGGCTGACGTTTGTATTGCCTGTTCCTGTTTAGGTTGTGATGGTG
GTGGTGGTGGTGGTGGTGGTGATGGTGGTAGTACTTGCTACGGCGTCTGT
GTTGCGTCTGCTTACCCGGCAGCAGCCTGTACGTACGTGCGTTCTGTTCT
TGCTGGGCCATGAAGAAGGAAAATGATGATCATGATGATGGTGATGGAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig84:674057..677156+

>mRNA_E-siliculosus-1a_M_contig84.16566.1 ID=mRNA_E-siliculosus-1a_M_contig84.16566.1|Name=mRNA_E-siliculosus-1a_M_contig84.16566.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=576bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:674057..677156+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGAAAAAGCAGCTGCGATAGCATGAGCAGAGGGATGATGATAGTAAC
AAAACCCACGCCAGCTCTCGAGATTAGCCCAGAGCCGTTAGTAGTGCGTT
TAGGTCGATTTGGCGAGGCCAAGTCTTGCCGGCGCAAAGCGCAAGCTTTG
CGGCTGACTCGACTTGCATGGTTGCCGACTCGTAGTCCTATGTCCACCAC
GTGGCGCTTGTTGTTGTCGAAATTCGATGGATTTGGGCGATTCACTGATG
GCGAGGGGCTGACGTTTGTATTGCCTGTTCCTGTTTAGATGAGAAAAAGC
AGCTGCGATAGCATGAGCAGAGGGATGATGATAGTAACAAAACCCACGCC
AGCTCTCGAGATTAGCCCAGAGCCGTTAGTAGTGCGTTTAGGTCGATTTG
GCGAGGCCAAGTCTTGCCGGCGCAAAGCGCAAGCTTTGCGGCTGACTCGA
CTTGCATGGTTGCCGACTCGTAGTCCTATGTCCACCACGTGGCGCTTGTT
GTTGTCGAAATTCGATGGATTTGGGCGATTCACTGATGGCGAGGGGCTGA
CGTTTGTATTGCCTGTTCCTGTTTAG
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