mRNA_E-siliculosus-1a_M_contig84.16544.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig84.16544.1 vs. uniprot
Match: D8LQ08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ08_ECTSI) HSP 1 Score: 1634 bits (4231), Expect = 0.000e+0 Identity = 903/1021 (88.44%), Postives = 921/1021 (90.21%), Query Frame = 1
Query: 1 MGKLNSFIKFVVFNANALLFLGGVGIVIVASLLLAADFIKLAQTYMQTLGIITLMVGILVAAMSIIGCVGTNRQIERDRLWSGRRILSLYQLILVAVVVGQGVVQMRLYSIEVSLEEAAADLPIQHGDFEGRFREGFNEAYFEQLCSASAGGDSWVWSLVEDHCPDAISRDACSCSDILDGSGLPAGCSRPETYSAEACCPDEEFCEAGKEEACPYAACRTGILEVLLSYITPARNYSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTIIRQHHKPGEGEGGEPGSQAGDLEGAPGGAKNPAGASIHALRLNLVQPAGAVRRAGASGKRGAAGGSPDRSTPAMSPMAVENIPTEPLSQFLTPRRGGNRITYGPGSGGEDDGETYEYQNPRKGKSAAVGPPRAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEGSRAAQEKRQHGXXXXXIAAVPTPVARLLPGAAPSRRHGEEKRSQERNHSYDSSSSADGEEEKKRENHGCGEIMADMTPVSAAAGDENDGSEFYQKLGAQTPAAHYGXXXXXXXXXXXXXXIFATSRTSPTPTGAASRLDPTRFLTDTSLVQATAASRYFPHGGGGSFQVPQSPITPELPGSNDSGNAEKPPRLEGQTNILTSPMSADVPTSSGGEERMVVPSSSGLSSNPCLLSQQTPVASPRGGLPPTYQEHTDAVGNAAHSGRPASAGHSAGGDSSVGDPTGLVASLANALLARANAGDGASPTNDSEKXXXXXXXXXXDPSSTPAGFLKGLMTQTPPGGVSPARPERRTLQRQPSGSAAFPRSGSDLSPVLSARGTLFQVADFPEEEEXXKK------TPSPLPVVEAATKPLPQVEMSTPGEGSRMFLGQTPITLSNADATRLYESNVSTDTVPITAAGAPDGRAGGEEKTSDSTSGRKASTSEQQPVVEDGVPSPAVEPADQARASPPGISPLNTTLTNRGEEPAVVAGGALSDGPTSDDATTPASATAAAPLPSAKPQGRFARFLEKAL 3045
MGKLNSFIKFVVFNANALLFLGGVGIVIVASLLLAADFIKLAQTYMQTLGIIT+MVGILVAAMSIIGCVGTNRQIERDRLWSGRRILSLYQLILVAVVVGQGVVQMRLYSIEVSLEEAAADLPIQHG+FEGRFREGFNEAYFEQLCSASAGGDSWVWSLVEDHCPDAISRDACSCSDILDGSGLPA CS PETYSAE CCPDEEFCEAGKEEACPYA CRTGILEVLLSYITPAR YSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTI+RQHHKPGEG GGEP SQ GDLEGAPGGAKNPAGASIHALRL+LVQPAGAVRRAGA+GKRGAAGGSPDR+TPAMSPMAVENIPTEPLSQFLTP+RGGNRITYGP SGGEDDGETYEYQNPRK ++A PEGSRAAQ+KRQHG IAAVPT ARLLPGAAPSRRHGEEKRSQERNHSYDSS SADGEEEKKRENHGCG IMADMTPVSAAAGDENDGSEFYQKLGAQTPAAHYGXXXXXXXX +FATSRTSPTPTGAASRLDPTRFLT+TS VQATAASRYFPHGGGGSFQVPQSPITPELPG NDSGNAEKPPRLEGQTNILTSPMSADVPTS GGE+R VVPSSSGLSSNPCLLSQQTPVASPRGGLPPTYQEHTDAVGNAAHSGRPASAGHSAGGDSSVGDPTGLVASLANALLARANAGDGASPTNDSE XXXXXXXX DPSSTPAGFLKGLMTQTPPGG SPARPERRTLQR+PSGSAA+PRSGSDLSPVLSARGTLFQ ADFPEE XX T S LPVVE A K LPQVEMSTPGEGSRMFL QTPITLSNAD TRLYESNVSTDTVPITAAGAPDG AGGEEKTSD+T GRKASTSEQQPVVED VPSPAVEPA+QARASPPG SPLNTTLTN G+EPAVVAGGALSDGPTSDDATTPASATAAAPLPSAKPQ RFARFLEKAL
Sbjct: 1 MGKLNSFIKFVVFNANALLFLGGVGIVIVASLLLAADFIKLAQTYMQTLGIITMMVGILVAAMSIIGCVGTNRQIERDRLWSGRRILSLYQLILVAVVVGQGVVQMRLYSIEVSLEEAAADLPIQHGEFEGRFREGFNEAYFEQLCSASAGGDSWVWSLVEDHCPDAISRDACSCSDILDGSGLPARCSTPETYSAEGCCPDEEFCEAGKEEACPYAPCRTGILEVLLSYITPARKYSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTIMRQHHKPGEGGGGEPDSQVGDLEGAPGGAKNPAGASIHALRLDLVQPAGAVRRAGAAGKRGAAGGSPDRATPAMSPMAVENIPTEPLSQFLTPKRGGNRITYGPDSGGEDDGETYEYQNPRKATASA------------------------------------------PEGSRAAQDKRQHGAGAAAIAAVPTLAARLLPGAAPSRRHGEEKRSQERNHSYDSSGSADGEEEKKRENHGCGGIMADMTPVSAAAGDENDGSEFYQKLGAQTPAAHYGXXXXXXXXD-----LFATSRTSPTPTGAASRLDPTRFLTNTSSVQATAASRYFPHGGGGSFQVPQSPITPELPGGNDSGNAEKPPRLEGQTNILTSPMSADVPTSIGGEKRTVVPSSSGLSSNPCLLSQQTPVASPRGGLPPTYQEHTDAVGNAAHSGRPASAGHSAGGDSSVGDPTGLVASLANALLARANAGDGASPTNDSENQXXXXXXXXNDPSSTPAGFLKGLMTQTPPGGASPARPERRTLQRRPSGSAAYPRSGSDLSPVLSARGTLFQAADFPEEXXXXXXXXXXXXTLSQLPVVEPAAKSLPQVEMSTPGEGSRMFLAQTPITLSNADVTRLYESNVSTDTVPITAAGAPDGGAGGEEKTSDTTFGRKASTSEQQPVVEDEVPSPAVEPANQARASPPGSSPLNTTLTNGGKEPAVVAGGALSDGPTSDDATTPASATAAAPLPSAKPQSRFARFLEKAL 974
BLAST of mRNA_E-siliculosus-1a_M_contig84.16544.1 vs. uniprot
Match: A0A6H5JEQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEQ5_9PHAE) HSP 1 Score: 1039 bits (2687), Expect = 0.000e+0 Identity = 644/772 (83.42%), Postives = 659/772 (85.36%), Query Frame = 1
Query: 739 MVLILTCLLICYNPRDSTEDILIKTGTIIRQHHKPGEGEGGEPGSQAGDLEGAPGGAKNPAGASIHALRLNLVQPAGAVRRAGASGKRGAAGGSPDRSTPAMSPMAVENIPTEPLSQFLTPRRGGNRITYGPGSGGEDDGETYEYQNPRKGKSAAVGPPRAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEGSRAAQEKRQHGXXXXXIAAVPTPVARLLPGAAPSRRHGEEKRSQERNHSYDSSSSADGEEEKKRENHGCGEIMADMTPVSAAAGDENDGSEFYQKLGAQTPAAHYGXXXXXXXXXXXXXXIFATSRTSPTPTGAASRLDPTRFLTDTSLVQATAASRYFPHGGGGSFQVPQSPITPELPGSNDSGNAEKPPRLEGQTNILTSPMSADVPTSSGGEERMVVPSSSGLSSNPCLLSQQTPVASPRGGLPPTYQEHTDAVGNAAHSGRPASAGHSAGGDSSVGDPTGLVASLANALLARANAGDGASPTNDSEKXXXXXXXXXXDPSSTPAGFLKGLMTQTPPGGVSPARPERRTLQRQPSGSAAFPRSGSDLSPVLSARGTLFQVADFPEEEEXXKKTPSPLPVVEAATKPLPQVEMSTPGEGSRMFLGQTPITLSNADATRLYESNVSTDTVPITAA---GAPDGRAGGEEKTSDSTSGRKASTSEQQPVVEDGVPSPAVEPADQARASPPGISPLNTTLTNRGEEPAVVAGGALSDGPTSDDATTPASATAAAPLPSAKPQGRFARFLEKAL 3045
MVLILTCLLICYNPRDSTEDILIKTGTI+RQ HKPGE G EPGSQAGDLEG PGGAKNPAGASIHALRL+LVQPAGA RRAGA GKRGAAGGSPDRSTPAMSPMAVEN FLTPRRGGNRITYGP S G DDGETY YQNPRKGKSAAVGPPRAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX VARLLPGAAPSRRHGEEKRS ERNHSYDSSSSADGEEEKKR++HGCG IMADM PVSA AGDENDGS+FYQKLGAQTPAA YG XXXXXXX IFATSRTSPTPTGAA LDPTRFL TSLVQATAASRYFPHG GGSFQVPQSP TPELPG ND+GNAEK RL+GQTNILTSP ADVPTSSG EER VVPSSSGL+SNPCLLSQQTPVASPRGGLPPTYQEHTDAVGNAA SG PAS GHSA GDSSVGD TGLVASLANALLARANAGDGASPTN SE DPSSTPA LKGLMTQTPPGGVSPARPER+TLQRQPSGSAA+PRSGSDLSPV ARGTLFQVADFPEEEE ++TPSPLPVVEA K LPQVEMST EGSRM LGQTPITLSNADATRLYESN+STDTVPITAA GAPDG AG EEKTSD TSGRKASTSEQQPVVEDG PSP VEPADQARASPP I PLNTTLTN EEPAVVAGG SDGP SDDATT ASATAAAP PS KPQ RF+RF+EKAL
Sbjct: 1 MVLILTCLLICYNPRDSTEDILIKTGTIVRQQHKPGERGGEEPGSQAGDLEGTPGGAKNPAGASIHALRLDLVQPAGAARRAGAVGKRGAAGGSPDRSTPAMSPMAVEN--------FLTPRRGGNRITYGPDSDGGDDGETYAYQNPRKGKSAAVGPPRAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----VARLLPGAAPSRRHGEEKRSHERNHSYDSSSSADGEEEKKRDDHGCGGIMADMRPVSAGAGDENDGSDFYQKLGAQTPAAQYGGXXXXXXX------IFATSRTSPTPTGAAPPLDPTRFLAGTSLVQATAASRYFPHGDGGSFQVPQSPKTPELPGGNDNGNAEKSLRLDGQTNILTSPKPADVPTSSGVEERTVVPSSSGLTSNPCLLSQQTPVASPRGGLPPTYQEHTDAVGNAARSGSPASEGHSASGDSSVGDTTGLVASLANALLARANAGDGASPTNGSENQQQEEEAGKNDPSSTPAVLLKGLMTQTPPGGVSPARPERKTLQRQPSGSAAYPRSGSDLSPVPFARGTLFQVADFPEEEE--EETPSPLPVVEATAKSLPQVEMSTAVEGSRMLLGQTPITLSNADATRLYESNISTDTVPITAAEAAGAPDGGAGDEEKTSDITSGRKASTSEQQPVVEDGAPSPVVEPADQARASPPYI-PLNTTLTNGVEEPAVVAGGTPSDGPNSDDATTTASATAAAPRPSTKPQSRFSRFVEKAL 750
BLAST of mRNA_E-siliculosus-1a_M_contig84.16544.1 vs. uniprot
Match: A0A812W7H9_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W7H9_SYMMI) HSP 1 Score: 162 bits (411), Expect = 7.340e-41 Identity = 93/282 (32.98%), Postives = 157/282 (55.67%), Query Frame = 1
Query: 1 MGKLNSFIKFVVFNANALLFLGGVGIVIVASLLLAADFIKLAQTYMQTLGIITLMVGILVAAMSIIGCVGTNRQIERDRLWSGRRILSLYQLILVAVVVGQGVVQMRLYSIEVSLEEAAADLP-----IQHGDFEGRFREGFNEAYFEQLCSASAGGDSWVWSLVEDHCPDAISRDAC-SCSDILDGSGLPAGCSRPETYSAEACCPDEEFC--EAGKEEACPYAACRTGILEVLLSYITPARNYSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTI 822
MG+LN+ IK++V N N + + +I+A L++ +D+ L + + I+ ++ +L+ +S++GC+G + Q E+ W+GRRIL+LYQL L+A ++G + +L + L+ +DL + +G FE + FNE +F + + +W WS V+DHCP +I + C +C D YS C DE+ C ++G + CPY CR G+L+ L+SY+ P + V + +++LTC+LICY P+D+ E +L+KTGTI
Sbjct: 1 MGRLNNMIKWLVMNVNLIYAAVALVSIILAVLVMVSDWGSLDRGFFLGWCIVVILFSVLILMISLLGCMGVSHQSEQLSCWTGRRILALYQLSLLATIIGNLWMVTKLIILVRGLDATYSDLTSADDTVDYGRFEEAVADRFNEFFFSAAATCTDSKYAWFWSWVDDHCPVSIGQARCMACGD----------------YSVTTCPADEDLCYAQSGGMDKCPYDQCRAGVLDYLISYMEPLNVALLVIAVFQLCIMVLTCMLICYTPQDTVEQMLVKTGTI 266
BLAST of mRNA_E-siliculosus-1a_M_contig84.16544.1 vs. uniprot
Match: W7U843_9STRA (Tetraspanin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U843_9STRA) HSP 1 Score: 124 bits (311), Expect = 1.160e-26 Identity = 100/290 (34.48%), Postives = 143/290 (49.31%), Query Frame = 1
Query: 1 MGKLNSFIKFVVFNAN-----ALLFLGGVGIVIV-ASLLLAADFIKLAQTYMQTLGIITLMVGILVAAMSIIGCVGTNRQIERDRLWSGRRILSLYQLILVAVVVG--QGVVQMRLYSIEVSLEEAAADLPIQHGDFEGRFREGFNEAYFEQLCSA------SAGGDSWVWSLVEDHCPDAISRDACSCSDI-LDGSGLPAGCSRPETYSAEACCPDEEFCEAGKEEACPYAACRTGILEVLLSYITPARNYSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTII 825
+ LN IKFVV +N A L LGG+ + A+ L A L Q ++ T++VG+ + +S +GC G RQI R GRR+LSLYQL+L+ ++ + MR +V L D + + FN YF+ +A AG +W CP +S D +C+ DG G G S P T + CCP ++ C AG +ACPY CR G+ L + + Y F+ +L+ +VLI TC+LICYNPRDS ++L KTG +I
Sbjct: 49 VNMLNDNIKFVVSTSNTCFCIAGLVLGGLAAYLYYATSLAAVTLTSLTQGWIMW----TMLVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLLFAFTTAFLAMRTLHTQVPLLLDNPDAVYARSE-QNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCP--LSMDVGTCTSCGTDGDG---GTSVPYT---DGCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVI 325
BLAST of mRNA_E-siliculosus-1a_M_contig84.16544.1 vs. uniprot
Match: K0TPL8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPL8_THAOC) HSP 1 Score: 117 bits (294), Expect = 2.090e-25 Identity = 79/229 (34.50%), Postives = 117/229 (51.09%), Query Frame = 1
Query: 154 ITLMVGILVAAMSIIGCVGTNRQIERDRLWSGRRILSLYQLILVAVVVGQGVVQMRLYSIEVSLEEAAADLPIQHGDFEGRFREGFNEAYFEQLCSA--SAGGDSWVWSLVEDHCPDAISRDACSCS----DILDGSGLPAGCSRPETYSAEACCPDEEFCEAGKEEACPYAACRTGILEVLLSYITPARNYSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTI 822
I L++ + V S GC G RQ +R ++GR+IL L+QL+L+AV+V + S+ D + FE R F+ YF+ LCS+ S GD W+ V +CP + AC+ S D+ D + A + + CCP +E C++G E ACPY CR I L ++ PA+ + G++++L+ LLICYNPRDS E L KTG +
Sbjct: 6 IALLLSLSVLFCSFYGCNGALRQTKRKGCFAGRKILCLHQLLLIAVLVFAFANLEWTTKLHRSVRSFLRDPSQDYNGFEERLSVFFDGEYFKSLCSSNDSTAGD-WLEKFVSANCPQQMKPTACALSGRKRDMCDTTCY-ALQGDTDRFQELGCCPSKELCQSGFESACPYDMCRLEIFHELSKFVGPAKVSAQASVAASGLMIVLSILLICYNPRDSIEIELYKTGVL 232
BLAST of mRNA_E-siliculosus-1a_M_contig84.16544.1 vs. uniprot
Match: A0A7S2G7W8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7W8_9STRA) HSP 1 Score: 113 bits (283), Expect = 7.030e-24 Identity = 76/278 (27.34%), Postives = 132/278 (47.48%), Query Frame = 1
Query: 10 LNSFIKFVVFNANALLFLGGVGIVIVASLLLAADFIKLAQTYMQTLGIITLMVGILVAAMSIIGCVGTNRQIERDRLWSGRRILSLYQLILVAVVVGQGVVQM-------RLYSIEVSLEEAAADLPIQHGDFEGRFREGFNEAYFEQLCSASAGGDSWVWSLVEDHCPDAISRDACSCSDILDGSGLPAGCSRPETYSAEACCPDEEFCEAGKEEACPYAACRTGILEVLLSYITPARNYSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTI 822
LN +KF F N++ L GV ++ ++ L + L ++ I + G+++ + + GC G Q +R GRR+LS YQ+ L+ ++ Q + L +++ L A +++ +++ D E FN+ YF+ + + D + W V++ CP + SG+ + ++Y+ CPDE C+ G CPY CR + L + P Y FV + E ++ILTC LIC+NPRD+ + IL+K+G
Sbjct: 25 LNGLLKFFFFIVNSMYCLVGVALIGLSIYCLTDAWADLDPDIYRSAATILISTGVVILIIVMCGCFGAVYQEQRTGSCRGRRLLSFYQICLLTLIGLQFYTTVYMLNTAESLQAVKGELASAKSNVTVEYVDAERSLSTKFNDYYFDTVTGSQ---DGYFWKFVDESCPKS--------------SGMGSDDCNVDSYATT--CPDEASCDDGASAQCPYDLCRRAAVTRFLGIVEPIGEYGIFVCIFETALMILTCCLICFNPRDAEQTILMKSGNF 283 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig84.16544.1 >prot_E-siliculosus-1a_M_contig84.16544.1 ID=prot_E-siliculosus-1a_M_contig84.16544.1|Name=mRNA_E-siliculosus-1a_M_contig84.16544.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1015bp MGKLNSFIKFVVFNANALLFLGGVGIVIVASLLLAADFIKLAQTYMQTLGback to top mRNA from alignment at E-siliculosus-1a_M_contig84:409552..418343+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig84.16544.1 ID=mRNA_E-siliculosus-1a_M_contig84.16544.1|Name=mRNA_E-siliculosus-1a_M_contig84.16544.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=8792bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:409552..418343+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig84:409552..418343+ >mRNA_E-siliculosus-1a_M_contig84.16544.1 ID=mRNA_E-siliculosus-1a_M_contig84.16544.1|Name=mRNA_E-siliculosus-1a_M_contig84.16544.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=6090bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:409552..418343+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |