mRNA_E-siliculosus-1a_M_contig827.16448.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig827.16448.1
Unique NamemRNA_E-siliculosus-1a_M_contig827.16448.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig827.16448.1 vs. uniprot
Match: A0A8K0SGE5_9HYPO (Cellobiohydrolase II n=1 Tax=Stachybotrys elegans TaxID=80388 RepID=A0A8K0SGE5_9HYPO)

HSP 1 Score: 77.4 bits (189), Expect = 3.840e-15
Identity = 32/47 (68.09%), Postives = 34/47 (72.34%), Query Frame = 1
Query:   37 PTETTPE-ENCAGEWGQCGGTQWQGPTCCEEGSDCVVGNEWYHQCIP 174
            P ET  E ++C   WGQCGG  WQGPTCC  GS CVV NEWYHQCIP
Sbjct:   20 PLETLEERQSCGTAWGQCGGNNWQGPTCCASGSSCVVVNEWYHQCIP 66          
BLAST of mRNA_E-siliculosus-1a_M_contig827.16448.1 vs. uniprot
Match: A0A0G4GJU6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GJU6_9ALVE)

HSP 1 Score: 73.9 bits (180), Expect = 6.520e-14
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 1
Query:   61 NCAGEWGQCGGTQWQGPTCCEEGSDCVVGNEWYHQCIPETT 183
            +CA  WGQCGG  W GP CCE GS+CVVGN WY QC+P TT
Sbjct:  348 SCASLWGQCGGQGWTGPICCESGSECVVGNPWYSQCVPPTT 388          
BLAST of mRNA_E-siliculosus-1a_M_contig827.16448.1 vs. uniprot
Match: A0A0G4HRU4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HRU4_9ALVE)

HSP 1 Score: 72.8 bits (177), Expect = 1.660e-13
Identity = 28/48 (58.33%), Postives = 31/48 (64.58%), Query Frame = 1
Query:   40 TETTPEENCAGEWGQCGGTQWQGPTCCEEGSDCVVGNEWYHQCIPETT 183
            T   P  +C+  WGQCGG  W GPTCCE GS C  GN WY QC+P TT
Sbjct:  339 TTAPPSGDCSALWGQCGGQNWSGPTCCESGSVCQFGNPWYSQCVPPTT 386          
BLAST of mRNA_E-siliculosus-1a_M_contig827.16448.1 vs. uniprot
Match: A0A084AGZ0_STACB (Feruloyl esterase C n=2 Tax=Stachybotrys chartarum TaxID=74722 RepID=A0A084AGZ0_STACB)

HSP 1 Score: 70.5 bits (171), Expect = 8.460e-13
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 PSSTNFVSKQCRPTETTPEENCAGEWGQCGGTQWQGPTCCEEGSDCVVGNEWYHQCIP 174
            PSST   S+  +PT T     C+  WGQCGG  W GPTCC +G+ C VGNEWY QCIP
Sbjct:  290 PSST---SRAPQPTSTGNPGQCSSLWGQCGGRDWTGPTCCSQGT-CTVGNEWYSQCIP 343          
BLAST of mRNA_E-siliculosus-1a_M_contig827.16448.1 vs. uniprot
Match: A0A179FKZ4_METCM (Glucanase n=2 Tax=Metacordyceps chlamydosporia TaxID=280754 RepID=A0A179FKZ4_METCM)

HSP 1 Score: 69.7 bits (169), Expect = 1.990e-12
Identity = 28/48 (58.33%), Postives = 31/48 (64.58%), Query Frame = 1
Query:   31 CRPTETTPEENCAGEWGQCGGTQWQGPTCCEEGSDCVVGNEWYHQCIP 174
            C P ET   +NCA  WGQCGG  W GPTCC  GS CV  N +Y QC+P
Sbjct:   18 CAPAET--RQNCATTWGQCGGQDWSGPTCCPSGSTCVAQNSYYSQCLP 63          
BLAST of mRNA_E-siliculosus-1a_M_contig827.16448.1 vs. uniprot
Match: Q2HID0_CHAGB (CBM1 domain-containing protein n=1 Tax=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) TaxID=306901 RepID=Q2HID0_CHAGB)

HSP 1 Score: 68.9 bits (167), Expect = 2.390e-12
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1
Query:   61 NCAGEWGQCGGTQWQGPTCCEEGSDCVVGNEWYHQCI 171
            NCA +WGQCGG+ WQGPTCC+ GS C   N+WY QC+
Sbjct:  262 NCAAKWGQCGGSGWQGPTCCQSGSTCQASNQWYSQCL 298          
BLAST of mRNA_E-siliculosus-1a_M_contig827.16448.1 vs. uniprot
Match: A0A7S0FTC9_9DINO (Hypothetical protein n=2 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FTC9_9DINO)

HSP 1 Score: 68.9 bits (167), Expect = 3.800e-12
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 1
Query:   64 CAGEWGQCGGTQWQGPTCCEEGSDCVVGNEWYHQCIP 174
            C+  WGQCGG QW G TCCE GS C V NEWYHQC+P
Sbjct:  259 CSEAWGQCGGKQWSGYTCCESGSYCKVTNEWYHQCVP 295          
BLAST of mRNA_E-siliculosus-1a_M_contig827.16448.1 vs. uniprot
Match: CEL6A_MAGO7 (1,4-beta-D-glucan cellobiohydrolase CEL6A n=5 Tax=Pyricularia TaxID=48558 RepID=CEL6A_MAGO7)

HSP 1 Score: 68.6 bits (166), Expect = 5.110e-12
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1
Query:   37 PTETTPEENCAGEWGQCGGTQWQGPTCCEEGSDCVVGNEWYHQCIP 174
            P      + CA +WGQCGG  + GPTCC+ GS CVV N+WY QC+P
Sbjct:   19 PLAVEERQACAAQWGQCGGQDYTGPTCCQSGSTCVVSNQWYSQCLP 64          
BLAST of mRNA_E-siliculosus-1a_M_contig827.16448.1 vs. uniprot
Match: A0A1Y2BUR3_9FUNG (CBM1 domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2BUR3_9FUNG)

HSP 1 Score: 68.2 bits (165), Expect = 7.070e-12
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   37 PTETTPEENCAGEWGQCGGTQWQGPTCCEEGSDCVVGNEWYHQCI 171
            PT   PEE C+G + QCGGT +QGPTCC+ GS CV  NE+Y QC+
Sbjct:  700 PTPKEPEEKCSGRYAQCGGTNYQGPTCCQSGSKCVFINEYYSQCL 744          
BLAST of mRNA_E-siliculosus-1a_M_contig827.16448.1 vs. uniprot
Match: G4U0Q6_SERID (CBM1 domain-containing protein n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4U0Q6_SERID)

HSP 1 Score: 64.3 bits (155), Expect = 9.250e-12
Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 1
Query:   61 NCAGEWGQCGGTQWQGPTCCEEGSDCVVGNEWYHQCI 171
            NC+ +WGQCGG  W GPTCC+ GS C   N WY QC+
Sbjct:   82 NCSAKWGQCGGQNWSGPTCCQSGSTCQYSNPWYSQCL 118          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig827.16448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K0SGE5_9HYPO3.840e-1568.09Cellobiohydrolase II n=1 Tax=Stachybotrys elegans ... [more]
A0A0G4GJU6_9ALVE6.520e-1468.29Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0G4HRU4_9ALVE1.660e-1358.33Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A084AGZ0_STACB8.460e-1356.90Feruloyl esterase C n=2 Tax=Stachybotrys chartarum... [more]
A0A179FKZ4_METCM1.990e-1258.33Glucanase n=2 Tax=Metacordyceps chlamydosporia Tax... [more]
Q2HID0_CHAGB2.390e-1264.86CBM1 domain-containing protein n=1 Tax=Chaetomium ... [more]
A0A7S0FTC9_9DINO3.800e-1270.27Hypothetical protein n=2 Tax=Pyrodinium bahamense ... [more]
CEL6A_MAGO75.110e-1254.351,4-beta-D-glucan cellobiohydrolase CEL6A n=5 Tax=... [more]
A0A1Y2BUR3_9FUNG7.070e-1260.00CBM1 domain-containing protein n=1 Tax=Neocallimas... [more]
G4U0Q6_SERID9.250e-1259.46CBM1 domain-containing protein n=1 Tax=Serendipita... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig827contigE-siliculosus-1a_M_contig827:320..505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size186
Model size186
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelMagnaporthales
CAZyGH6
COG Functional cat.G
EC3.2.1.91
EggNOG OGs21499@147550,2QWHE@2759,39RNX@33154,3NXS8@4751,3QMEP@4890,41MAP@639021,COG5297@1
EggNOG free text desc.Belongs to the glycosyl hydrolase
GOsGO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0016052,GO:0016162,GO:0016787,GO:0016798,GO:0043170,GO:0044042,GO:0044238,GO:0071704,GO:1901575
KEGG Pathwayko00500,ko01100,ko02020,map00500,map01100,map02020
KEGG ReactionR02886,R11308
KEGG koko:K19668
KEGG rclassRC00799
Preferred namecbhC
Seed eggNOG ortholog318829.MGG_05520T0
Seed ortholog evalue1.6e-09
Seed ortholog score68.2
Taxonomic scopeFungi
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936263.2302322-CDS-E-siliculosus-1a_M_contig827:319..5051622936263.2302322-CDS-E-siliculosus-1a_M_contig827:319..505Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig827 320..505 +
1696250997.8885915-CDS-E-siliculosus-1a_M_contig827:319..5051696250997.8885915-CDS-E-siliculosus-1a_M_contig827:319..505Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig827 320..505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig827.16448.1prot_E-siliculosus-1a_M_contig827.16448.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig827 320..505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig827.16448.1

>prot_E-siliculosus-1a_M_contig827.16448.1 ID=prot_E-siliculosus-1a_M_contig827.16448.1|Name=mRNA_E-siliculosus-1a_M_contig827.16448.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=62bp
PSSTNFVSKQCRPTETTPEENCAGEWGQCGGTQWQGPTCCEEGSDCVVGN
EWYHQCIPETT*
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mRNA from alignment at E-siliculosus-1a_M_contig827:320..505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig827.16448.1 ID=mRNA_E-siliculosus-1a_M_contig827.16448.1|Name=mRNA_E-siliculosus-1a_M_contig827.16448.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=186bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig827:320..505+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCGTCATCGACCAATTTTGTTTCGAAACAGTGCCGCCCGACTGAGACTAC CCCTGAGGAAAACTGCGCGGGAGAGTGGGGCCAATGCGGCGGAACTCAGT GGCAAGGGCCGACCTGCTGTGAGGAAGGCAGCGACTGCGTCGTTGGCAAC GAGTGGTACCACCAATGCATTCCCGAGACGACTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig827:320..505+

>mRNA_E-siliculosus-1a_M_contig827.16448.1 ID=mRNA_E-siliculosus-1a_M_contig827.16448.1|Name=mRNA_E-siliculosus-1a_M_contig827.16448.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=372bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig827:320..505+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCGTCATCGACCAATTTTGTTTCGAAACAGTGCCGCCCGACTGAGACTAC
CCCTGAGGAAAACTGCGCGGGAGAGTGGGGCCAATGCGGCGGAACTCAGT
GGCAAGGGCCGACCTGCTGTGAGGAAGGCAGCGACTGCGTCGTTGGCAAC
GAGTGGTACCACCAATGCATTCCCGAGACGACTTGACCGTCATCGACCAA
TTTTGTTTCGAAACAGTGCCGCCCGACTGAGACTACCCCTGAGGAAAACT
GCGCGGGAGAGTGGGGCCAATGCGGCGGAACTCAGTGGCAAGGGCCGACC
TGCTGTGAGGAAGGCAGCGACTGCGTCGTTGGCAACGAGTGGTACCACCA
ATGCATTCCCGAGACGACTTGA
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