mRNA_E-siliculosus-1a_M_contig82.16441.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig82.16441.1
Unique NamemRNA_E-siliculosus-1a_M_contig82.16441.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig82.16441.1 vs. uniprot
Match: D7G289_ECTSI (zf-LYAR domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G289_ECTSI)

HSP 1 Score: 491 bits (1263), Expect = 3.380e-168
Identity = 338/391 (86.45%), Postives = 340/391 (86.96%), Query Frame = 1 
Query:    4 AVCCPSARASGSSLLPQWASLWPLLLPRLLILPPPLLRAELLADEMVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVKNDLTAKEKEATATPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDAATRKALAKAAVGAVKKAQDKRIAVKELVKQAXXXXXXXXXXXXXXXXXXXXEHQPDDQTLRRALKQRLKTGGLRHVTVEGKVAVYSKG 1176
            AVCCPSA+AS SSLLPQWASLWPL LPRLLILPPPLLRAELLADEMVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVKNDLTAKEKEATATPAA             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXX            VDAATRKALAKAA+GAVKKAQ KRIAVKELVKQA                    EHQPDDQTLRRALKQRLKTGGLRHVTVEGKVAVYSKG
Sbjct:   16 AVCCPSAKASSSSLLPQWASLWPLPLPRLLILPPPLLRAELLADEMVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVKNDLTAKEKEATATPAAAAVAQVTAVAEEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPRXXXXXXXXXXXXXXXGEEAEGARNGGGVDAATRKALAKAAIGAVKKAQGKRIAVKELVKQAAAAVLVARGTEGSSSGSSK-EHQPDDQTLRRALKQRLKTGGLRHVTVEGKVAVYSKG 405
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig82.16441.1 vs. uniprot
Match: A0A7R9UG70_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG70_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.050e-43
Identity = 82/169 (48.52%), Postives = 115/169 (68.05%), Query Frame = 1 
Query:  106 PLLRAELLADEMVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVKNDLTAKEKEATA 612
            PL RA      MV+FVCE CNE+LKKAQVDRH   C++CW VTCVDC  TF  D +R+HTSC+SE +KY+ +    PK K++  G +E+W + V  A+ N +   AP  +   L ++  LGNVPR E+KF+NF+ NSLR+ DET V+++W Y+  +K+   A+++EATA
Sbjct:    7 PLQRALNRRKPMVFFVCEGCNESLKKAQVDRHAARCRACWAVTCVDCGKTFPDDEYRSHTSCISEAEKYEKSTRAVPKTKKQ--GPHEVWMEVVETASKNVAD--APPRIQGWLPKIQSLGNVPRVERKFRNFLGNSLRLRDETIVTEIWQYLSELKSRQKAEKQEATA 171
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig82.16441.1 vs. uniprot
Match: A0A7S2SQW7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQW7_9STRA)

HSP 1 Score: 159 bits (402), Expect = 4.450e-41
Identity = 76/147 (51.70%), Postives = 98/147 (66.67%), Query Frame = 1 
Query:  139 MVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPK-----AKQKNRGVNEIWADSVLLAASNASSGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYV 564
            MV+FVCE CNE+LKK QVD+H   C +CW VTCVDCN TFEGD +R HTSC+SE QKY+GAL++ PK       +K +G  EIW + V  AA  A S  AP  + + +  +   GNVPR + KF NFVKNSLRV  E  + ++W ++
Sbjct:    1 MVFFVCEGCNESLKKNQVDKHASFCSACWAVTCVDCNVTFEGDDYRQHTSCISEAQKYEGALYRGPKKGGETGSKKKKGPQEIWMEVVEQAA--AESQQAPANIRSMISNLSGFGNVPRNQNKFCNFVKNSLRVRSEPMIKQIWEFL 145
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig82.16441.1 vs. uniprot
Match: A0A835Z9A3_9STRA (zf-LYAR domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9A3_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.250e-40
Identity = 68/148 (45.95%), Postives = 107/148 (72.30%), Query Frame = 1 
Query:  139 MVYFVCESCNETLKKAQVDRHLYSC--KSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVK 576
            MV+F CE CNE+LKKAQV++H+++C  ++CW VTC+DCN TF+GD +  HT+C+SE +KY+  ++K  K K   +   + W D V  AA++A++   P  + AHL RM D GNVPRQEKKF+NF++NSL+++D  ++  +W +++ ++
Sbjct:    1 MVFFNCEGCNESLKKAQVEKHVFTCPARNCWAVTCIDCNVTFKGDDYATHTTCISEAEKYEKTVYKGNKGKPVKKNPQDAWMDLVTEAAASAAT---PPAVRAHLQRMADFGNVPRQEKKFRNFLQNSLKLWDAGAIDAIWRHLEALR 145
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig82.16441.1 vs. uniprot
Match: A0A7S4DDA0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDA0_HETAK)

HSP 1 Score: 156 bits (395), Expect = 5.200e-40
Identity = 75/155 (48.39%), Postives = 106/155 (68.39%), Query Frame = 1 
Query:  139 MVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVKNDLTAKEKE 603
            MV+FVC+ CNETLK+ QVD H   C SC+ VTCVDCN +F  + ++ H +C+SE +KYQG L++APK K   +   E W + V+    N+++  AP  L ++L RM DLGNVPRQ KKF NFVKNSL +  +  V++LW ++DG++    AK++E
Sbjct:    1 MVFFVCDGCNETLKRNQVDTHAGRCHSCYAVTCVDCNVSFPDNDYKQHMTCISEAEKYQGNLYQAPKKKAGKQNPQEAWMELVV----NSANQPAPAGLKSYLQRMADLGNVPRQRKKFGNFVKNSLALRSDAVVAQLWDHLDGLRE--AAKQRE 149
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig82.16441.1 vs. uniprot
Match: W7TWJ6_9STRA (Zinc finger, C2H2, LYAR-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWJ6_9STRA)

HSP 1 Score: 141 bits (355), Expect = 6.960e-35
Identity = 74/151 (49.01%), Postives = 96/151 (63.58%), Query Frame = 1 
Query:  139 MVYFVCESCNETLKKAQVDRHLYSCK-SCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKA-----KQKNRGVNEIWADSVL-LAASNASSGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDG 570
            MV+F CE CNETLKKAQV+ HL     S + V+CVDC+  F G S++AHTSC+SE +KY+ +L+K PKA     K K R   E W + +  +A  N+ +G     L  HL RM +LGNVPR EKKFKNF+ NSLR+       +LW Y+ G
Sbjct:    1 MVFFSCEGCNETLKKAQVESHLRRALCSRYPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKG 151
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig82.16441.1 vs. uniprot
Match: A0A7S3HA97_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HA97_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.310e-34
Identity = 69/160 (43.12%), Postives = 98/160 (61.25%), Query Frame = 1 
Query:  139 MVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVKNDLTAKEKEATATP 618
            MV+FVCE CNET+KK QVD+H   C+SC  VTCVDC+ TF G+ +  H +CVSE +KY+  L+KA   K     +N  +A +  +  + + +  AP  +  +L R+G+L NVPR +KKF NF KNSLR++ +  +  LW Y+D  +     KE    A P
Sbjct:    1 MVFFVCEGCNETVKKNQVDKHASRCRSCHAVTCVDCSVTFYGNDYAEHITCVSEAEKYEKTLYKAKAVK-----LNPQYAWNAQIETATSKAETAPAIVRPYLQRLGELNNVPRNKKKFINFAKNSLRLYSDNVLEALWNYLDTYRVLPATKEAPQKAEP 155
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig82.16441.1 vs. uniprot
Match: A0A8K1FM11_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FM11_PYTOL)

HSP 1 Score: 138 bits (348), Expect = 8.360e-34
Identity = 76/160 (47.50%), Postives = 99/160 (61.88%), Query Frame = 1 
Query:  139 MVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLW-AYVDGVKNDLTAKEKEATAT 615
            MV+FVCE CNETLKK +VD H   C++CW V+CVDC+  FEG+ + AHTSC+SE QKY+G+L+   KAK K     E W D V     NA++G   K L + L R+    NVPR++ KF NF+KNS+   D   + K+W  + D  K    A E EA AT
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAARCRNCWAVSCVDCSVVFEGNDYAAHTSCISEAQKYEGSLY---KAKSKKMSPQERWMDVV----QNATAG-NDKKLQSVLSRVAGYDNVPRKKAKFVNFMKNSIGGGDMAIIEKVWNVFEDAYK----ASEAEANAT 148
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig82.16441.1 vs. uniprot
Match: A0A485KW80_9STRA (Aste57867_12667 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW80_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.110e-33
Identity = 76/163 (46.63%), Postives = 101/163 (61.96%), Query Frame = 1 
Query:  139 MVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPK-AKQKNRGVNEIWADSVLLAASNASSGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVS-KLWAYVDGVKNDLTAKEKEATATPA 621
            MV+FVCE CNETLKK +VD H   C++CW VTCVDC   F+G+ + AHT+C+SE QKY+GAL++ PK AKQ  +   E W D  L+ +S A      + L     R+    NVPR++ KF NF++NS+ V   T V  KLW +++   N L    KE TA PA
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAARCRNCWAVTCVDCQVVFKGNDYAAHTTCISEAQKYEGALYQGPKGAKQAKKNPQERWMD--LIQSSTAPEAKVNQAL----QRIAGYDNVPRKKPKFLNFLRNSIGV---TGVEEKLWTFLETEFNKL----KETTAEPA 150
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig82.16441.1 vs. uniprot
Match: A0A6G0XRS4_9STRA (zf-LYAR domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRS4_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.220e-33
Identity = 75/164 (45.73%), Postives = 101/164 (61.59%), Query Frame = 1 
Query:  139 MVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPK-AKQKNRGVNEIWADSVLLAASNASSGVAPKPLCAH-LVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVS-KLWAYVDGVKNDLTAKEKEATATPA 621
            MV+FVCE CNETLKK +VD H   C++CW VTCVDC   F+GD +  HTSC+SE QKY+GAL++ PK +KQ  +   E W D +        S  AP P     L R+    NVPR++ KF NF++NS+ V   T V  KLWA+++   N +  + +EAT  P+
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAARCRNCWAVTCVDCQVIFKGDDYAQHTSCISEAQKYEGALYQGPKGSKQAKKNPQERWMDLI-------QSTTAPDPKVNQALQRIAGYDNVPRKKPKFLNFLRNSVGV---TGVEEKLWAFLEAEFNKVK-ETQEATKRPS 153
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig82.16441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G289_ECTSI3.380e-16886.45zf-LYAR domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7R9UG70_9STRA3.050e-4348.52Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2SQW7_9STRA4.450e-4151.70Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A835Z9A3_9STRA2.250e-4045.95zf-LYAR domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S4DDA0_HETAK5.200e-4048.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TWJ6_9STRA6.960e-3549.01Zinc finger, C2H2, LYAR-type n=1 Tax=Nannochlorops... [more]
A0A7S3HA97_9STRA1.310e-3443.13Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8K1FM11_PYTOL8.360e-3447.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485KW80_9STRA2.110e-3346.63Aste57867_12667 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XRS4_9STRA3.220e-3345.73zf-LYAR domain-containing protein n=1 Tax=Aphanomy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig82contigE-siliculosus-1a_M_contig82:674787..678933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1041
Model size1593
Exons7
Ec32 orthologEc-16_002050.1
Ec32 ortholog descriptionZinc finger, C2H2, LYAR-type
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGsKOG2186@1,KOG2186@2759
EggNOG free text desc.erythrocyte development
GOsGO:0000122,GO:0001750,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005929,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030097,GO:0030099,GO:0030100,GO:0030154,GO:0030218,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032879,GO:0034101,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042592,GO:0042995,GO:0043005,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0045807,GO:0045892,GO:0045934,GO:0046483,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0050764,GO:0050766,GO:0050789,GO:0050794,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0060627,GO:0061515,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0120025,GO:0120038,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
KEGG koko:K14785,ko:K15263
Preferred nameLYAR
Seed eggNOG ortholog2880.D7G289
Seed ortholog evalue8.6e-113
Seed ortholog score413.7
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936261.1915834-UTR-E-siliculosus-1a_M_contig82:674786..6752001622936261.1915834-UTR-E-siliculosus-1a_M_contig82:674786..675200Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 674787..675200 -
1696250996.8913445-UTR-E-siliculosus-1a_M_contig82:674786..6752001696250996.8913445-UTR-E-siliculosus-1a_M_contig82:674786..675200Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 674787..675200 -
1622936261.3219383-UTR-E-siliculosus-1a_M_contig82:678795..6789331622936261.3219383-UTR-E-siliculosus-1a_M_contig82:678795..678933Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 678796..678933 -
1696250997.0009263-UTR-E-siliculosus-1a_M_contig82:678795..6789331696250997.0009263-UTR-E-siliculosus-1a_M_contig82:678795..678933Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 678796..678933 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936261.2133143-CDS-E-siliculosus-1a_M_contig82:675200..6754191622936261.2133143-CDS-E-siliculosus-1a_M_contig82:675200..675419Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 675201..675419 -
1696250996.9047112-CDS-E-siliculosus-1a_M_contig82:675200..6754191696250996.9047112-CDS-E-siliculosus-1a_M_contig82:675200..675419Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 675201..675419 -
1622936261.2267897-CDS-E-siliculosus-1a_M_contig82:675973..6762181622936261.2267897-CDS-E-siliculosus-1a_M_contig82:675973..676218Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 675974..676218 -
1696250996.9244883-CDS-E-siliculosus-1a_M_contig82:675973..6762181696250996.9244883-CDS-E-siliculosus-1a_M_contig82:675973..676218Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 675974..676218 -
1622936261.2418153-CDS-E-siliculosus-1a_M_contig82:676692..6769091622936261.2418153-CDS-E-siliculosus-1a_M_contig82:676692..676909Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 676693..676909 -
1696250996.93615-CDS-E-siliculosus-1a_M_contig82:676692..6769091696250996.93615-CDS-E-siliculosus-1a_M_contig82:676692..676909Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 676693..676909 -
1622936261.255305-CDS-E-siliculosus-1a_M_contig82:677312..6774711622936261.255305-CDS-E-siliculosus-1a_M_contig82:677312..677471Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 677313..677471 -
1696250996.9465642-CDS-E-siliculosus-1a_M_contig82:677312..6774711696250996.9465642-CDS-E-siliculosus-1a_M_contig82:677312..677471Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 677313..677471 -
1622936261.2691429-CDS-E-siliculosus-1a_M_contig82:677973..6780331622936261.2691429-CDS-E-siliculosus-1a_M_contig82:677973..678033Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 677974..678033 -
1696250996.962441-CDS-E-siliculosus-1a_M_contig82:677973..6780331696250996.962441-CDS-E-siliculosus-1a_M_contig82:677973..678033Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 677974..678033 -
1622936261.2883985-CDS-E-siliculosus-1a_M_contig82:678378..6784861622936261.2883985-CDS-E-siliculosus-1a_M_contig82:678378..678486Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 678379..678486 -
1696250996.975074-CDS-E-siliculosus-1a_M_contig82:678378..6784861696250996.975074-CDS-E-siliculosus-1a_M_contig82:678378..678486Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 678379..678486 -
1622936261.3046255-CDS-E-siliculosus-1a_M_contig82:678762..6787951622936261.3046255-CDS-E-siliculosus-1a_M_contig82:678762..678795Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 678763..678795 -
1696250996.98746-CDS-E-siliculosus-1a_M_contig82:678762..6787951696250996.98746-CDS-E-siliculosus-1a_M_contig82:678762..678795Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 678763..678795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig82.16441.1prot_E-siliculosus-1a_M_contig82.16441.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig82 675201..678795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig82.16441.1

>prot_E-siliculosus-1a_M_contig82.16441.1 ID=prot_E-siliculosus-1a_M_contig82.16441.1|Name=mRNA_E-siliculosus-1a_M_contig82.16441.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=347bp
MVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTS
CVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKPLC
AHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVKNDLT
AKEKEATATPAAAAVAQVTAAAEEPKEETAAATESARKSSKKEKKSKKRA
REEAADTGNGATADGSDNGSGGGEKRPRGKQSEEEKQPQDAAAGEEAEGA
RNGGGVDAATRKALAKAAVGAVKKAQDKRIAVKELVKQAAAAVLVARGTE
DSSSSGSSKEHQPDDQTLRRALKQRLKTGGLRHVTVEGKVAVYSKG*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig82:674787..678933-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig82.16441.1 ID=mRNA_E-siliculosus-1a_M_contig82.16441.1|Name=mRNA_E-siliculosus-1a_M_contig82.16441.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4147bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:674787..678933- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCTGCTGTGTGCTGTCCATCCGCACGAGCATCGGGCTCCTCTCTTTTACC
GCAGTGGGCAAGTCTCTGGCCCCTTCTGCTGCCACGACTGCTAATTCTTC
CACCGCCTCTTCTCAGGGCCGAGCTACTCGCGGACGAGATGGTGTACTTT
GTGTGCGAGTCGTGCAATGAGGTGTGTGTGTGTGGCGAGGAAGGTCCGGT
ACACAGCAGGACAGCGAGGGCGGCAGCGAGAGGAGCTCCTTGTTTCGCAG
CCCGCCGCGCGTGAACACTCAAGCTGACTTAGCTGGTGTCCTTGAGACGT
GCCTTCATGGTATGGTTGGTTATCCGGGTTGGATATGATGTACTGCTGTA
AAACATGTCAATCGTACAGAAAACTCAGGTTGCTGGTCCGCTCCCTCCCT
CTGCGTTCTGCATATCCTTGGCAACCTTGGCGCTGTATCTACCTCAGACG
CTGAAAAAGGCACAGGTTGACAGGCACCTCTACTCGTGCAAGAGTTGCTG
GGGCGTGACTTGCGTGGACTGCAACTTCACCTTCGAAGGCGATTCGTTCA
GGGCGGTAAGGGCCGCGTGGGGGGGGGTGAGGGCGAGACACAGAGAACGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGACGCATCAGTCGAGCGTTGTAGC
TACATAGTGCAAGAGGGTCCTCATGGGGACATGGTCGATGCACGGACAGA
CAGATACCCAACTGCCTGCACTCTTCTAGACAAAAAAGTCGTCCATATCC
TTAAGGCGATGAGTACGTAGCCTTAGAGGCTCCCTGTTGGTCCGAGAGAA
AGCCGTACGTGATTCAGCTTGTGTCCCCCTGTCCGCCGTGCGTGCAACAA
TCTTGGTCCCGATAACTACTGACTGTTGCGCTCTCGCTGTCCTTTTGCAG
CACACCTCTTGCGTGTCCGAGGACCAGAAGTACCAAGGCGCTTTGTTCAA
GGCTCCGAAGGTGCGAAACGTAAAAACCCATCCGATACGGATGTAAGCAT
CACCGCACACTGACCTACCGCATGTGTGTGAAGGTGGCTCCATGTCTCGC
GGGTGTTCACGCGCTACCTCCGCGTACATTTCCACCGTCTTCTGGAAACA
ATTTCATGCCAATCTAGCCTAGGCAGTTTATTTGGTACATCGGTAAACAC
AAGAGACAGAGCACAATGAATAGTCAGCGCTGTGTGGTGTGGGCGTGCAA
TGGCGATTGGTTGTACGTACCTCACCGCGGCGAAAGACAGCATTCACAGC
CGCAACCAACCGCATGCTCTTGCGAAGCCCATTCGCGTGCTTCCAAAGTA
GTAGTGGTACTCGTTTGCCCTTCGCAAGCCACCGAACTGAAGACGAGGTA
GACCCGGGTGCACTGCTGTGTATTCTGCATGCTGGGCCCACTTCCTCACT
CTAGTTCGCTACCCCCCCCCCGCCACCCCGGGTGCATGCCAACGTGTGCC
GACGTTAACCAGGCCAAGCAGAAGAATCGCGGAGTGAACGAGATCTGGGC
CGATTCTGTCCTGCTTGCCGCGAGCAACGCCTCTTCCGGTGTTGCTCCCA
AACCGCTGTGCGCCCACCTGGTTCGCATGGGAGACCTCGGCAACGTGCCG
CGCCAGGAGAAGAAGTTCAAGGTGCGGAAGGACAACAGTAGCAGCAGCAG
TAGGAGTCATGAAACTTCGCGGGCGGTGAAAAGCATTGTCTTGCACAGTC
CGCAGTATTCCGCGTGTGCATATGCATGGTTGATAATAGTCACACGGGCT
TCATTGTACGCATGTGTGCGTCAGCGGATATTTACGTGTGAATGTCTCGT
ATTGCTTGATGTGTTTGTTTCTTAGGCATCGACCGCTGCAACCGGCTGAC
CCCTAGAAAGTCGTCATTCTTGCGTGTGCGTGTTGGCGCGTGTGCGTGTG
CTGTTGATCCTCTAGCGCTCGATGTATGTGTGTACACCGGTTGCACTTGG
CCGCTTGAAAGTTTTTTTCTCTTGACATGTGCTTGTTCTGCGGATGTGTG
TTGTCGATGGTCGTGAGGAAACAGAACTTCGTAAAGAACAGCCTTCGTGT
GTTCGATGAGACCAGCGTCTCCAAGCTGTGGGCCTACGTTGACGGCGTCA
AGAACGACCTGACGGCAAAAGAGAAGGAGGCGACGGCAACGCCGGCAGCG
GCGGCCGTGGCCCAAGTAACGGCTGCGGCCGAAGAGCCTAAGGAGGAGAC
AGCCGCGGCAACAGAATCCGCGCGAAAATCGTCCAAGAAAGGTGTGTGTT
GCTTCACACAGATAGCAACGGTTGTTGTATAAGCGGGCCTGCAGAAGCGT
CTCTGTAGAGGAGGAGCAGGAGTAGACTCTTTTTTTCGGGCACGGTATAT
TTCAAAACCTTAGGAAAATTCGCAAGAATCTTGTGTTTTGTGGTAGTAGG
TAGGGTAAGTCTACATGTAGCGTCAACATTTTTGTTTTGTAGACTTGTTC
GAAACACCAGCGTTCTTTGACGACACAAAGACTATTGTTCTCCAGGGATG
TTGATTTAGATCCCGCAGATTCCACAACTCTCATGTCGATGGCAGATCCC
CGCCCAACCTTCAAGCGTGCAGCTATCACGGACCAGCCTTAAGCCGCGCG
TAAGTGGTGCGAACTCGTGCCGACAACCTGTGTGCGTTTGCACCCAACCT
CCCTCCCCCCCTGCTTCCCTCCTGTTTCTCTTCCTGCACGCGCGACCGCA
TCACCATCACCACAGAGAAAAAGAGCAAAAAGCGAGCGAGAGAAGAGGCG
GCGGATACGGGGAACGGGGCGACTGCAGACGGCAGCGATAACGGTAGCGG
TGGCGGTGAAAAGAGACCGCGAGGAAAGCAGTCAGAAGAGGAGAAGCAGC
CGCAAGATGCGGCGGCCGGCGAAGAAGCCGAGGGTGCGAGAAACGGTGGT
GGGGTAGATGCGGCCACTCGTAAGGCGTTAGCCAAGGCGGCCGTCGGCGC
TGTGAAGAAGGTGGGCGGGGGGTGATGATGCCGCGCGAAGGGCAGTCGGC
TGTGCTCTTCTGTAGGTGTTTTGGCTCACGTTGTGCTTTGATCTAGCCAA
GCGCCCAAAACTATCGCGTCATGTCACGAGACACACAGCGGGTGCATGAC
GGCAGCAGCAAAGCCACCCACAAACCTCAACACGCTCAGATAACCAAGGC
ACACGCCGTGTACCTACCCATCGTGTCCCGAATCTTGGCTTGAGTCCATC
AATGTTTGTCGCCAGCAGCAAGTTGGTCGGCAGCAAGGACATCGCTACCG
TGTTGAAATTCGTCACGATCATACCTCTCTTCTCTGCAGCCACTATTGAT
TGCTGGGTGGGTGTAAACGACGTCTCTACACACGTGGGTGCGTTAAGAAC
GACGGTTTGATAAACTGCGGGTGGCTTGTAGTATTCTGAATAGTTGCGCC
CCGATTGGCCAGCCTTCCTCCTTGTTGCCGTTTTTTTTTTCCGCTTGGTA
TCTCCATGTTTTTTTTTTTCCCAACCCCTCTCTACCTCAACTGTTCTGTC
TCAATTTCCACCAGGCTCAGGACAAGAGGATAGCGGTGAAGGAACTCGTC
AAGCAGGCGGCGGCGGCGGTGTTGGTGGCAAGAGGCACGGAGGACAGCAG
CAGCAGCGGCAGCAGCAAGGAGCACCAGCCGGACGACCAGACGCTCAGGC
GTGCCCTGAAGCAGCGGTTAAAGACCGGGGGGCTCCGCCACGTGACGGTG
GAAGGGAAGGTGGCCGTCTACTCCAAGGGATAGGGTTGGGCCCAATAGTT
GTCGCCGTTGTTCATAAGTCAAGGATGGCAGTGAAGGGTGTGGTCGCGGG
CAGATATTGCGCGGGGGGCTCTTTTTCTTCGGCTAGTAGAGTCGGGTATC
GTAGGTCTTGGGCACGGCAGAAACCAACAGAGAGGGAGAGAAGAAAATGC
GAGCACCGCTCCGACCGCAAGCAGCGATCGCCCGGGAAATGATGCGGGCG
AGTTTGCTTTCGGGGGTCTGCCTAGTAGTATACCCACCTGCTGGCGTTAG
CATCTATCTTGGCTTCTGTATCGGAAGACGGAGCTCCACGTGCTACCCGA
AATAAATGCTCTTAGTCGCTGACGGTGTGGCATCACGGTACCCGAAAGGA
TGAGCCGTCGACCGAGTAGCAACAACATAGACCGAAGTTCCGGCAGC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig82:674787..678933-

>mRNA_E-siliculosus-1a_M_contig82.16441.1 ID=mRNA_E-siliculosus-1a_M_contig82.16441.1|Name=mRNA_E-siliculosus-1a_M_contig82.16441.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2082bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:674787..678933- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTGTACTTTGTGTGCGAGTCGTGCAATGAGATGGTGTACTTTGTGTG
CGAGTCGTGCAATGAGACGCTGAAAAAGGCACAGGTTGACAGGCACCTCT
ACTCGTGCAAGAGTTGCTGGGGCGTGACTTGCGTGGACTGCAACTTCACC
TTCGAAGGCGATTCGTTCAGGGCGACGCTGAAAAAGGCACAGGTTGACAG
GCACCTCTACTCGTGCAAGAGTTGCTGGGGCGTGACTTGCGTGGACTGCA
ACTTCACCTTCGAAGGCGATTCGTTCAGGGCGCACACCTCTTGCGTGTCC
GAGGACCAGAAGTACCAAGGCGCTTTGTTCAAGGCTCCGAAGCACACCTC
TTGCGTGTCCGAGGACCAGAAGTACCAAGGCGCTTTGTTCAAGGCTCCGA
AGGCCAAGCAGAAGAATCGCGGAGTGAACGAGATCTGGGCCGATTCTGTC
CTGCTTGCCGCGAGCAACGCCTCTTCCGGTGTTGCTCCCAAACCGCTGTG
CGCCCACCTGGTTCGCATGGGAGACCTCGGCAACGTGCCGCGCCAGGAGA
AGAAGTTCAAGGCCAAGCAGAAGAATCGCGGAGTGAACGAGATCTGGGCC
GATTCTGTCCTGCTTGCCGCGAGCAACGCCTCTTCCGGTGTTGCTCCCAA
ACCGCTGTGCGCCCACCTGGTTCGCATGGGAGACCTCGGCAACGTGCCGC
GCCAGGAGAAGAAGTTCAAGAACTTCGTAAAGAACAGCCTTCGTGTGTTC
GATGAGACCAGCGTCTCCAAGCTGTGGGCCTACGTTGACGGCGTCAAGAA
CGACCTGACGGCAAAAGAGAAGGAGGCGACGGCAACGCCGGCAGCGGCGG
CCGTGGCCCAAGTAACGGCTGCGGCCGAAGAGCCTAAGGAGGAGACAGCC
GCGGCAACAGAATCCGCGCGAAAATCGTCCAAGAAAGAACTTCGTAAAGA
ACAGCCTTCGTGTGTTCGATGAGACCAGCGTCTCCAAGCTGTGGGCCTAC
GTTGACGGCGTCAAGAACGACCTGACGGCAAAAGAGAAGGAGGCGACGGC
AACGCCGGCAGCGGCGGCCGTGGCCCAAGTAACGGCTGCGGCCGAAGAGC
CTAAGGAGGAGACAGCCGCGGCAACAGAATCCGCGCGAAAATCGTCCAAG
AAAGAGAAAAAGAGCAAAAAGCGAGCGAGAGAAGAGGCGGCGGATACGGG
GAACGGGGCGACTGCAGACGGCAGCGATAACGGTAGCGGTGGCGGTGAAA
AGAGACCGCGAGGAAAGCAGTCAGAAGAGGAGAAGCAGCCGCAAGATGCG
GCGGCCGGCGAAGAAGCCGAGGGTGCGAGAAACGGTGGTGGGGTAGATGC
GGCCACTCGTAAGGCGTTAGCCAAGGCGGCCGTCGGCGCTGTGAAGAAGA
GAAAAAGAGCAAAAAGCGAGCGAGAGAAGAGGCGGCGGATACGGGGAACG
GGGCGACTGCAGACGGCAGCGATAACGGTAGCGGTGGCGGTGAAAAGAGA
CCGCGAGGAAAGCAGTCAGAAGAGGAGAAGCAGCCGCAAGATGCGGCGGC
CGGCGAAGAAGCCGAGGGTGCGAGAAACGGTGGTGGGGTAGATGCGGCCA
CTCGTAAGGCGTTAGCCAAGGCGGCCGTCGGCGCTGTGAAGAAGGCTCAG
GACAAGAGGATAGCGGTGAAGGAACTCGTCAAGCAGGCGGCGGCGGCGGT
GTTGGTGGCAAGAGGCACGGAGGACAGCAGCAGCAGCGGCAGCAGCAAGG
AGCACCAGCCGGACGACCAGACGCTCAGGCGTGCCCTGAAGCAGCGGTTA
AAGACCGGGGGGCTCCGCCACGTGACGGTGGAAGGGAAGGTGGCCGTCTA
CTCCAAGGGATAGGCTCAGGACAAGAGGATAGCGGTGAAGGAACTCGTCA
AGCAGGCGGCGGCGGCGGTGTTGGTGGCAAGAGGCACGGAGGACAGCAGC
AGCAGCGGCAGCAGCAAGGAGCACCAGCCGGACGACCAGACGCTCAGGCG
TGCCCTGAAGCAGCGGTTAAAGACCGGGGGGCTCCGCCACGTGACGGTGG
AAGGGAAGGTGGCCGTCTACTCCAAGGGATAG
back to top