mRNA_E-siliculosus-1a_M_contig82.16411.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig82.16411.1
Unique NamemRNA_E-siliculosus-1a_M_contig82.16411.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig82.16411.1 vs. uniprot
Match: A0A6H5KNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI2_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 8.090e-77
Identity = 343/407 (84.28%), Postives = 344/407 (84.52%), Query Frame = -2 
Query:  198 RFRGKVLNLTARVPLMRFPKNPPKVSAAALRSTKGVQKFLEDIGFPVPPDPPTGRKRPRKPPAKKQKVAPSAAP-SIPEATAIGPSPGAAAXXXXXXXXXXXXXXXXXXXAQPLA-------PGATSQQQQRSVTPTKPRSTSPAKGSKSTKKRKAPASAKTSKAGGXXXXXXXXTAGGLSTVSWSKTSPSRSTSPFRPAPNTSLAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---AGEVSAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEKETPKLTLRLGKLPHKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDPPAPKAKAATSIXXXXXXXXXXXXXXXXXXXXXXVAPPTAPK 1385
            RFRGKVLNLTARVPLMRFPKNPPKVSAAALRSTKGVQKFLEDIGFP+PPDPP GRKRPRKPPAKKQKVAPSAAP SIPEATAIGPSPGA  XXXXXXXXXXXXXXXXXXX            PGA SQQQ RSVTPTKPRSTSPAKGSKSTKKRKAPA AKTSKAG XXXXXXXX  GGLS VSWSKTSPSRSTSPFRPAPNTSLAV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   AGEVSAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   XXXXXXXXX    AEKETPKLTLRLGKLPHKPXXXXXXXX      XXXXXXXXXXXXXXXXXXXXKDP APKAKAATSI                      VAPPTAPK
Sbjct: 1605 RFRGKVLNLTARVPLMRFPKNPPKVSAAALRSTKGVQKFLEDIGFPIPPDPPAGRKRPRKPPAKKQKVAPSAAPPSIPEATAIGPSPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAASQQQ-RSVTPTKPRSTSPAKGSKSTKKRKAPAGAKTSKAGXXXXXXXXXXXGGLSAVSWSKTSPSRSTSPFRPAPNTSLAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEAGEVSAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEASXXXXXXXXXTGA-AEKETPKLTLRLGKLPHKPXXXXXXXXAVRTAPXXXXXXXXXXXXXXXXXXXXKDPSAPKAKAATSIPKVK------------------VAPPTAPK 1991
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BLAST of mRNA_E-siliculosus-1a_M_contig82.16411.1 vs. uniprot
Match: D7FWI3_ECTSI (Global transcription factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI3_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.750e-11
Identity = 180/266 (67.67%), Postives = 181/266 (68.05%), Query Frame = -2 
Query:  198 PAKGSKSTKKRKAPASAKTSKAGGXXXXXXXXTAGGLSTVSWSKTSPSRSTSPFRPAPNTSLAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----AGEVSAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEKETPKLTLRLGKLPHKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDPPAPKAKAATSIXXXXXXXXXXXXXXXXXXXXXXVAPPTAPK 980
            P KGSKSTKKR             XXXXXXXXTAGGLS VSWSKTSPSRSTSPFRP P+TSLAVGXXXXXXXXXXXXXXX                             AGEVSA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             AEKETPKLTLRLGKLPHKP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDPPAPKAK ATSI                      VAPPTAPK
Sbjct: 1060 PPKGSKSTKKRXXXXXXXXXXXXXXXXXXXXXTAGGLSAVSWSKTSPSRSTSPFRPVPSTSLAVGXXXXXXXXXXXXXXXESKTPKSSKVSIKIPAPNKSSAPPGGSPEAGEVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGRSAGSGTGA-AEKETPKLTLRLGKLPHKPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDPPAPKAKTATSIPKVK------------------VAPPTAPK 1306
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig82.16411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNI2_9PHAE8.090e-7784.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWI3_ECTSI5.750e-1167.67Global transcription factor group n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig82contigE-siliculosus-1a_M_contig82:426293..427726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size1434
Model size1434
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936246.995415-CDS-E-siliculosus-1a_M_contig82:426292..4277261622936246.995415-CDS-E-siliculosus-1a_M_contig82:426292..427726Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 426293..427726 +
1696250989.8147426-CDS-E-siliculosus-1a_M_contig82:426292..4277261696250989.8147426-CDS-E-siliculosus-1a_M_contig82:426292..427726Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 426293..427726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig82.16411.1prot_E-siliculosus-1a_M_contig82.16411.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig82 426293..427726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig82.16411.1

>prot_E-siliculosus-1a_M_contig82.16411.1 ID=prot_E-siliculosus-1a_M_contig82.16411.1|Name=mRNA_E-siliculosus-1a_M_contig82.16411.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=478bp
GGASSSTAAAASALALLPLPAAAALPPPLGVLPPGAGRAAAGAAGVAVAA
ADFWGALGLGSGGGFGFGAVGGATLTLGIDVAALALGIDVAALALGIDVA
ALALGAGGSLGFGAAAAGLGAAAGFAGPGAGAVLAAAGFSGALPGLCGSL
PSLSVSLGVSFSAVPVPDPALRPVPEASPPPPPPSLALFGDVLVLLPPPF
FLGPRATADAAAAATAAADTSPASGLPPGGALDLLGAGILIETLDDFGIL
LSAVAPAAAAPPPTANDVFGAGRNGLVDRLGDVFDHDTVDNPPAVPPPPP
LLPPPALLVLALAGAFLFLVDFDPLAGEVDRGFVGVTDRCCCCDVAPGAS
GCAGVEAAAAAAAAATAAAAAAAAAPGDGPIAVASGMDGAADGATFCFFA
GGFLGLFRPVGGSGGTGNPMSSRNFWTPFVLRRAAALTLGGFFGKRMRGT
RAVRFRTLPRNLGCGTGAAVGLGFLGSA
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mRNA from alignment at E-siliculosus-1a_M_contig82:426293..427726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig82.16411.1 ID=mRNA_E-siliculosus-1a_M_contig82.16411.1|Name=mRNA_E-siliculosus-1a_M_contig82.16411.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:426293..427726+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCGGTGCCTCCTCCTCCACGGCCGCAGCCGCTTCAGCTCTGGCCCTCTT
GCCCTTGCCGGCGGCGGCAGCCTTGCCTCCGCCGCTGGGAGTCTTGCCGC
CCGGCGCCGGGCGTGCTGCCGCCGGCGCAGCCGGCGTCGCCGTCGCCGCC
GCCGATTTCTGGGGTGCTCTGGGCTTGGGGAGCGGGGGGGGCTTCGGCTT
CGGGGCCGTGGGCGGCGCCACCTTGACCTTGGGGATAGACGTGGCCGCCT
TGGCCTTGGGGATAGACGTGGCCGCCTTGGCCTTGGGGATAGACGTGGCC
GCCTTGGCCTTGGGAGCGGGGGGGTCCTTGGGCTTTGGAGCCGCCGCGGC
CGGCTTGGGAGCGGCCGCGGGTTTCGCGGGCCCGGGAGCGGGGGCTGTTC
TCGCGGCGGCCGGCTTCAGCGGCGCCTTGCCGGGCTTGTGCGGGAGCTTG
CCTAGCCTGAGCGTCAGCTTGGGCGTTTCTTTCTCAGCCGTTCCCGTTCC
CGACCCTGCGCTCCGACCAGTCCCCGAAGCCTCGCCGCCGCCGCCGCCGC
CGTCGCTAGCCTTGTTCGGCGACGTCTTGGTCTTGCTCCCGCCTCCTTTC
TTCTTAGGGCCGCGAGCCACCGCCGACGCCGCCGCCGCCGCCACCGCAGC
GGCAGACACCTCGCCGGCTTCCGGGCTCCCCCCGGGCGGGGCGCTAGACT
TGTTGGGCGCCGGTATCTTAATCGAAACCTTGGACGACTTTGGCATCTTG
CTCTCCGCCGTCGCTCCGGCTGCAGCAGCGCCTCCTCCTACCGCTAACGA
CGTATTCGGCGCGGGACGGAACGGGCTCGTCGATCGGCTTGGCGACGTTT
TCGACCACGACACGGTGGACAACCCCCCGGCCGTACCACCACCGCCGCCA
CTGCTTCCGCCACCGGCCTTGCTGGTCTTGGCACTGGCGGGAGCCTTCCT
TTTCTTGGTGGACTTCGACCCCTTGGCAGGCGAGGTCGACCGAGGTTTCG
TCGGCGTCACCGACCGCTGCTGCTGCTGCGACGTCGCGCCCGGCGCTAGT
GGTTGCGCTGGGGTAGAAGCAGCGGCGGCGGCAGCGGCGGCAGCAACAGC
GGCAGCGGCGGCAGCAGCGGCAGCGCCAGGAGACGGCCCAATCGCTGTCG
CCTCGGGAATGGATGGTGCCGCCGACGGAGCCACCTTTTGCTTCTTCGCC
GGTGGTTTCCTGGGTCTCTTCCGCCCAGTAGGTGGATCTGGCGGGACGGG
GAACCCGATGTCTTCCAGGAATTTCTGGACCCCCTTCGTGCTCCGCAGGG
CAGCGGCGCTTACCTTGGGAGGATTCTTCGGGAAACGCATGAGAGGCACG
CGGGCGGTCAGATTTAGAACCTTGCCGCGGAATCTCGGTTGTGGCACGGG
GGCGGCGGTGGGTTTGGGCTTCTTGGGCTCTGCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig82:426293..427726+

>mRNA_E-siliculosus-1a_M_contig82.16411.1 ID=mRNA_E-siliculosus-1a_M_contig82.16411.1|Name=mRNA_E-siliculosus-1a_M_contig82.16411.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2868bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:426293..427726+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCGGTGCCTCCTCCTCCACGGCCGCAGCCGCTTCAGCTCTGGCCCTCTT
GCCCTTGCCGGCGGCGGCAGCCTTGCCTCCGCCGCTGGGAGTCTTGCCGC
CCGGCGCCGGGCGTGCTGCCGCCGGCGCAGCCGGCGTCGCCGTCGCCGCC
GCCGATTTCTGGGGTGCTCTGGGCTTGGGGAGCGGGGGGGGCTTCGGCTT
CGGGGCCGTGGGCGGCGCCACCTTGACCTTGGGGATAGACGTGGCCGCCT
TGGCCTTGGGGATAGACGTGGCCGCCTTGGCCTTGGGGATAGACGTGGCC
GCCTTGGCCTTGGGAGCGGGGGGGTCCTTGGGCTTTGGAGCCGCCGCGGC
CGGCTTGGGAGCGGCCGCGGGTTTCGCGGGCCCGGGAGCGGGGGCTGTTC
TCGCGGCGGCCGGCTTCAGCGGCGCCTTGCCGGGCTTGTGCGGGAGCTTG
CCTAGCCTGAGCGTCAGCTTGGGCGTTTCTTTCTCAGCCGTTCCCGTTCC
CGACCCTGCGCTCCGACCAGTCCCCGAAGCCTCGCCGCCGCCGCCGCCGC
CGTCGCTAGCCTTGTTCGGCGACGTCTTGGTCTTGCTCCCGCCTCCTTTC
TTCTTAGGGCCGCGAGCCACCGCCGACGCCGCCGCCGCCGCCACCGCAGC
GGCAGACACCTCGCCGGCTTCCGGGCTCCCCCCGGGCGGGGCGCTAGACT
TGTTGGGCGCCGGTATCTTAATCGAAACCTTGGACGACTTTGGCATCTTG
CTCTCCGCCGTCGCTCCGGCTGCAGCAGCGCCTCCTCCTACCGCTAACGA
CGTATTCGGCGCGGGACGGAACGGGCTCGTCGATCGGCTTGGCGACGTTT
TCGACCACGACACGGTGGACAACCCCCCGGCCGTACCACCACCGCCGCCA
CTGCTTCCGCCACCGGCCTTGCTGGTCTTGGCACTGGCGGGAGCCTTCCT
TTTCTTGGTGGACTTCGACCCCTTGGCAGGCGAGGTCGACCGAGGTTTCG
TCGGCGTCACCGACCGCTGCTGCTGCTGCGACGTCGCGCCCGGCGCTAGT
GGTTGCGCTGGGGTAGAAGCAGCGGCGGCGGCAGCGGCGGCAGCAACAGC
GGCAGCGGCGGCAGCAGCGGCAGCGCCAGGAGACGGCCCAATCGCTGTCG
CCTCGGGAATGGATGGTGCCGCCGACGGAGCCACCTTTTGCTTCTTCGCC
GGTGGTTTCCTGGGTCTCTTCCGCCCAGTAGGTGGATCTGGCGGGACGGG
GAACCCGATGTCTTCCAGGAATTTCTGGACCCCCTTCGTGCTCCGCAGGG
CAGCGGCGCTTACCTTGGGAGGATTCTTCGGGAAACGCATGAGAGGCACG
CGGGCGGTCAGATTTAGAACCTTGCCGCGGAATCTCGGTTGTGGCACGGG
GGCGGCGGTGGGTTTGGGCTTCTTGGGCTCTGCTGGCGGTGCCTCCTCCT
CCACGGCCGCAGCCGCTTCAGCTCTGGCCCTCTTGCCCTTGCCGGCGGCG
GCAGCCTTGCCTCCGCCGCTGGGAGTCTTGCCGCCCGGCGCCGGGCGTGC
TGCCGCCGGCGCAGCCGGCGTCGCCGTCGCCGCCGCCGATTTCTGGGGTG
CTCTGGGCTTGGGGAGCGGGGGGGGCTTCGGCTTCGGGGCCGTGGGCGGC
GCCACCTTGACCTTGGGGATAGACGTGGCCGCCTTGGCCTTGGGGATAGA
CGTGGCCGCCTTGGCCTTGGGGATAGACGTGGCCGCCTTGGCCTTGGGAG
CGGGGGGGTCCTTGGGCTTTGGAGCCGCCGCGGCCGGCTTGGGAGCGGCC
GCGGGTTTCGCGGGCCCGGGAGCGGGGGCTGTTCTCGCGGCGGCCGGCTT
CAGCGGCGCCTTGCCGGGCTTGTGCGGGAGCTTGCCTAGCCTGAGCGTCA
GCTTGGGCGTTTCTTTCTCAGCCGTTCCCGTTCCCGACCCTGCGCTCCGA
CCAGTCCCCGAAGCCTCGCCGCCGCCGCCGCCGCCGTCGCTAGCCTTGTT
CGGCGACGTCTTGGTCTTGCTCCCGCCTCCTTTCTTCTTAGGGCCGCGAG
CCACCGCCGACGCCGCCGCCGCCGCCACCGCAGCGGCAGACACCTCGCCG
GCTTCCGGGCTCCCCCCGGGCGGGGCGCTAGACTTGTTGGGCGCCGGTAT
CTTAATCGAAACCTTGGACGACTTTGGCATCTTGCTCTCCGCCGTCGCTC
CGGCTGCAGCAGCGCCTCCTCCTACCGCTAACGACGTATTCGGCGCGGGA
CGGAACGGGCTCGTCGATCGGCTTGGCGACGTTTTCGACCACGACACGGT
GGACAACCCCCCGGCCGTACCACCACCGCCGCCACTGCTTCCGCCACCGG
CCTTGCTGGTCTTGGCACTGGCGGGAGCCTTCCTTTTCTTGGTGGACTTC
GACCCCTTGGCAGGCGAGGTCGACCGAGGTTTCGTCGGCGTCACCGACCG
CTGCTGCTGCTGCGACGTCGCGCCCGGCGCTAGTGGTTGCGCTGGGGTAG
AAGCAGCGGCGGCGGCAGCGGCGGCAGCAACAGCGGCAGCGGCGGCAGCA
GCGGCAGCGCCAGGAGACGGCCCAATCGCTGTCGCCTCGGGAATGGATGG
TGCCGCCGACGGAGCCACCTTTTGCTTCTTCGCCGGTGGTTTCCTGGGTC
TCTTCCGCCCAGTAGGTGGATCTGGCGGGACGGGGAACCCGATGTCTTCC
AGGAATTTCTGGACCCCCTTCGTGCTCCGCAGGGCAGCGGCGCTTACCTT
GGGAGGATTCTTCGGGAAACGCATGAGAGGCACGCGGGCGGTCAGATTTA
GAACCTTGCCGCGGAATCTCGGTTGTGGCACGGGGGCGGCGGTGGGTTTG
GGCTTCTTGGGCTCTGCT
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