mRNA_E-siliculosus-1a_M_contig80.16266.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig80.16266.1
Unique NamemRNA_E-siliculosus-1a_M_contig80.16266.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16266.1 vs. uniprot
Match: D7FP80_ECTSI (Flagellar associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP80_ECTSI)

HSP 1 Score: 489 bits (1259), Expect = 4.750e-169
Identity = 247/251 (98.41%), Postives = 248/251 (98.80%), Query Frame = 2 
Query:   56 MGIRAAACSLLFAARASTACAFRIQAAARSCPLGFPAAASRRGYKSTTTAMSAPGGNELVMDAFAMRQFTDESYTGTKVAYDPQEFEDKVNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVTGYEARTAKELPILSRWFECGTVETPEAKFLDIILYSREQIRKETAAMGKEKEDSEAPWGIISVKSQDVDHEIPMQPITMMRNALGKQEGGSGVPLEREKYMQSVEFWRDHAPVK 808
            MGIRAAACSLLFAARASTACAFRIQAAAR CPLGFPAAASRRGYKSTTTAMSAPGGNELVMDAFAMRQFTDESYTGTKVAYDPQEFEDKVNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLV GYEARTAKELPILSRWFE GTVETPEAKFLDIILYSREQIRKETAAMGKEKEDSEAPWGIISVKSQDVDHEIPMQPITMMRNALGK+EGGSGVPLEREKYMQSVEFWRDHAPVK
Sbjct:    1 MGIRAAACSLLFAARASTACAFRIQAAARPCPLGFPAAASRRGYKSTTTAMSAPGGNELVMDAFAMRQFTDESYTGTKVAYDPQEFEDKVNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVAGYEARTAKELPILSRWFESGTVETPEAKFLDIILYSREQIRKETAAMGKEKEDSEAPWGIISVKSQDVDHEIPMQPITMMRNALGKEEGGSGVPLEREKYMQSVEFWRDHAPVK 251
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16266.1 vs. uniprot
Match: A0A7S1TVC6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVC6_9STRA)

HSP 1 Score: 264 bits (675), Expect = 4.640e-81
Identity = 133/208 (63.94%), Postives = 160/208 (76.92%), Query Frame = 2 
Query:  194 TTTAMSAPGGNELVMDAFAMRQFTDES--YTGTKVAYDPQEFEDKVNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVTGYEARTAKELPILSRWFECGTV-ETPEAKFLDIILYSREQIRKETAAMGKEKEDSEAPWGIISVKSQDVDHEIPMQPITMMRNALGKQEGGSGVPLEREKYMQSVEFWRDHAPVK 808
            T+T M+    +ELV+D FA+RQF D    YTGTKV++D  EFE K+NE + A G  L +GYAPFCKH+FVPNFAGVK ST+ ITPENE LL + YEART +ELP+LSR+F    V E PE K+LDIILYSREQI KE A M +   D+ APWGIISVK+QDVD+E+PMQPITMMRNALG+ +GGSGV L REKY +SV FW  +AP+K
Sbjct:   46 TSTRMAMASTHELVLDEFALRQFNDRDPGYTGTKVSFDEAEFEAKINEAYDAGGKALVDGYAPFCKHIFVPNFAGVKASTLPITPENEHLLRSSYEARTEQELPVLSRYFPLAAVGEPPECKYLDIILYSREQIAKEAADMDRAAPDTTAPWGIISVKAQDVDYELPMQPITMMRNALGRDQGGSGVELVREKYDESVAFWSGNAPIK 253
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16266.1 vs. uniprot
Match: A0A7S3Y2J4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2J4_HETAK)

HSP 1 Score: 258 bits (658), Expect = 9.820e-79
Identity = 126/204 (61.76%), Postives = 152/204 (74.51%), Query Frame = 2 
Query:  197 TTAMSAPGGNELVMDAFAMRQFTDESYTGTKVAYDPQEFEDKVNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVTGYEARTAKELPILSRWFECGTVETPEAKFLDIILYSREQIRKETAAMGKEKEDSEAPWGIISVKSQDVDHEIPMQPITMMRNALGKQEGGSGVPLEREKYMQSVEFWRDHAPVK 808
            TT   A    E+V+D F MRQFTD++YTGTK+ YDP +FE K+N++F A    L +GYAPFCKH+FVPNFAGV  S   IT EN  LL +GYEART KELP+L RWF    V   E +FLDIILYSREQIRKE  AMG++   S+APWGI+SVK+QD+++EIPMQPITMMRNALG  +GGSGV L+ + Y  SV FW DHA +K
Sbjct:   38 TTLRMASSEREIVIDPFCMRQFTDDAYTGTKINYDPDDFEVKINDLFSAGQAPLVDGYAPFCKHLFVPNFAGVVGSIAAITEENIHLLKSGYEARTEKELPVLVRWFSAEDVPQSETEFLDIILYSREQIRKENEAMGEDS-GSDAPWGIVSVKAQDINYEIPMQPITMMRNALGADQGGSGVTLDADAYAASVAFWTDHATIK 240
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16266.1 vs. uniprot
Match: A0A0M0KA33_9EUKA (Flagellar associated protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0KA33_9EUKA)

HSP 1 Score: 250 bits (638), Expect = 2.120e-76
Identity = 120/195 (61.54%), Postives = 154/195 (78.97%), Query Frame = 2 
Query:  230 LVMDAFAMRQF-TDESYTGTKVAYDPQEFEDKVNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVTGYEARTAKELPILSRWF-ECGTVETPEAKFLDIILYSREQIRKETAAMGKEKEDSEAPWGIISVKSQDVDHEIPMQPITMMRNALGKQEGGSGVPLEREKYMQSVEFWRDHAPVK 808
             V+D FA +QF  + +Y GT+V YD Q FE K+NE++ +    L +GYAPFCKH+FVPNFAGVK + + +TPENE  L +GYEART +EL +L+RWF + G  E   A+++DIILYSREQI KE AAMG+E+E + APWGIIS+K+QDV +E+PMQPITMMRNALGK+EGGSGVP+ER KY++SV FW  HAP+K
Sbjct:    2 FVIDPFAFKQFDANIAYEGTRVEYDKQAFEAKINELYASGDYPLVDGYAPFCKHLFVPNFAGVKNNVLVVTPENEGRLRSGYEARTEQELAVLTRWFPKDGADEPTVARYMDIILYSREQINKEAAAMGREEEPTTAPWGIISIKAQDVGYELPMQPITMMRNALGKEEGGSGVPMERAKYLESVAFWSKHAPIK 196
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16266.1 vs. uniprot
Match: A0A7S2UWN7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN7_9STRA)

HSP 1 Score: 252 bits (643), Expect = 3.400e-76
Identity = 123/193 (63.73%), Postives = 148/193 (76.68%), Query Frame = 2 
Query:  227 ELVMDAFAMRQFTDESYTGTKVAYDPQEFEDKVNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVTGYEARTAKELPILSRWFECGTVETPEAKFLDIILYSREQIRKETAAMGKEKEDSEAPWGIISVKSQDVDHEIPMQPITMMRNALGKQEGGSGVPLEREKYMQSVEFWRDHAPV 805
            + V+D F +RQF D++YTGT V YD Q+F+DKVNE +   G  L +GYAPFCKH+FVPNFAGV+ S V IT EN  L+ + Y+ART KEL +L RW     VE  +A FLDIILYSREQI KE  AMG+EK D++APWGIISVK+QDVDHEIPMQPITMMRNALGK+ GGSGV L R+KY +SV FW+ H  +
Sbjct:   70 KFVLDKFCIRQFDDDNYTGTNVYYDKQQFQDKVNE-YHDNGTPLVDGYAPFCKHLFVPNFAGVERSIVAITEENRHLIQSEYQARTDKELLVLVRWIPKDKVEPSQASFLDIILYSREQINKENEAMGQEKPDTDAPWGIISVKAQDVDHEIPMQPITMMRNALGKEHGGSGVELSRDKYTESVNFWQSHVTI 261
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16266.1 vs. uniprot
Match: A0A7S4FA99_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FA99_CHRCT)

HSP 1 Score: 247 bits (630), Expect = 3.860e-75
Identity = 123/201 (61.19%), Postives = 148/201 (73.63%), Query Frame = 2 
Query:  206 MSAPGGNELVMDAFAMRQFTDESYTGTKVAYDPQEFEDKVNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVTGYEARTAKELPILSRWFECGTVETPE-AKFLDIILYSREQIRKETAAMGKEKEDSEAPWGIISVKSQDVDHEIPMQPITMMRNALGKQEGGSGVPLEREKYMQSVEFWRDHAPV 805
            MSA    +  +D F +RQF D  Y+GTKVA+D  +F +++     A    L +GYAPFCKH+FVPNF    T  + ITPENE LL T Y+ART +ELP+L+RWF   TV  P  AKFLDIILYSREQIRKE  AMG+  + +E PWGIISVK+QDVD+E+PMQPITMMRNALGK EGGSGVPL REKY +SV FW+ HAP+
Sbjct:    1 MSAASTRKFCLDPFCLRQFDDPKYSGTKVAHDKADFLERIIAAHDAGNAPLVDGYAPFCKHLFVPNFTPATTPYLPITPENEGLLRTAYDARTEQELPVLTRWFPAETVPAPPIAKFLDIILYSREQIRKEAEAMGRTDDQTE-PWGIISVKAQDVDYELPMQPITMMRNALGKSEGGSGVPLVREKYNESVNFWKQHAPI 200
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16266.1 vs. uniprot
Match: A0A835YXC5_9STRA (Flagellar associated protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC5_9STRA)

HSP 1 Score: 246 bits (627), Expect = 1.080e-74
Identity = 113/201 (56.22%), Postives = 156/201 (77.61%), Query Frame = 2 
Query:  197 TTAMSAPGGNELVMDAFAMRQFTDESYTGTKVAYDPQEFEDKVNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVTGYEARTAKELPILSRWFECGTVETPEAKFLDIILYSREQIRKETAAMGKEKEDSEAPWGIISVKSQDVDHEIPMQPITMMRNALGKQEGGSGVPLEREKYMQSVEFWRDHA 799
            T  M++     +V+D F +RQF DESYTGTK+ Y P++ E+++N+ F+       +GYA FCKH+F+PNF GV+ + V+ITPENE LL +GY+ART KEL +L+RWF  G+V  P A++LD+ILYSR+QIRKE AAMG++   S+APWG++S+K+QDVD E+PMQPITM+RNALG+ +GGSGVPL+ + Y +SV FW +HA
Sbjct:    1 TATMASDNNRAIVIDPFCLRQFNDESYTGTKIHYSPEQCEEEINKHFQK-NPTTHDGYASFCKHIFMPNFMGVEGAIVRITPENEALLRSGYQARTPKELAVLARWFPRGSVPPPPARYLDVILYSRDQIRKENAAMGEDC-GSDAPWGVVSIKAQDVDREVPMQPITMLRNALGRDQGGSGVPLDADAYRESVAFWSEHA 199
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16266.1 vs. uniprot
Match: K3X1V7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1V7_GLOUD)

HSP 1 Score: 244 bits (624), Expect = 4.620e-74
Identity = 115/197 (58.38%), Postives = 149/197 (75.63%), Query Frame = 2 
Query:  224 NELVMDAFAMRQFTDESYTGTKVAYDPQEFEDKVNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVTGYEARTAKELPILSRWFECGTVETPEAKFLDIILYSREQIRKETAAMGKE--KEDSEAPWGIISVKSQDVDHEIPMQPITMMRNALGKQEGGSGVPLEREKYMQSVEFWRDHAPVK 808
            +ELV+D F +RQF D  Y GT++ YD  EFE K+NEI+ A   +L +GYAPFCKH+F+ NF   + + VKITP N +LL + YEAR   ELP+L RWF   +V    AK+LD+ILYSREQIRKE  A G    +E  +APWGIISVK+QDVD+E+PM P+T+MRNALGK+EGGSGVPL R++Y++SVE+W++HA VK
Sbjct:   18 HELVLDRFCLRQFDDPQYLGTQIKYDKVEFEKKINEIYLARNKELVDGYAPFCKHLFIENFTDTRLNVVKITPSNSRLLQSDYEARAPNELPVLVRWFPSHSVTPLVAKYLDVILYSREQIRKENEATGNPNPEEQDDAPWGIISVKAQDVDYELPMNPVTVMRNALGKEEGGSGVPLNRDEYLKSVEYWKNHALVK 214
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16266.1 vs. uniprot
Match: A0A0L0GAW9_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GAW9_9EUKA)

HSP 1 Score: 244 bits (623), Expect = 7.930e-74
Identity = 117/193 (60.62%), Postives = 143/193 (74.09%), Query Frame = 2 
Query:  230 LVMDAFAMRQFTDESYTGTKVAYDPQEFEDKVNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVTGYEARTAKELPILSRWFECGTVETPEAKFLDIILYSREQIRKETAAMGKEKEDSEAPWGIISVKSQDVDHEIPMQPITMMRNALGKQEGGSGVPLEREKYMQSVEFWRDHAPVK 808
             VMD FAMRQF D +YTGT++ +DP EFE KVNE + +    L++GYAPFCKH+F+PNF GVK    +IT +N  LL T YEAR+ KELP+L R+F+   V  P+A  LDIILYS+EQI KE  AMG   +   APWGIISVK Q  D+E+PMQPITM+RNALG+ EGGSGV LEREKY +SV FW++HA  K
Sbjct:   28 FVMDDFAMRQFDDPNYTGTRIKFDPSEFEAKVNEFYTSGEATLKDGYAPFCKHLFIPNFCGVKCGYARITADNRSLLQTEYEARSEKELPVLVRFFKTEDVTAPDATHLDIILYSKEQIIKENEAMGNPGKIMSAPWGIISVKGQTKDYELPMQPITMLRNALGRDEGGSGVKLEREKYSESVNFWKEHASFK 220
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16266.1 vs. uniprot
Match: A0A7S0P3Z7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P3Z7_9EUKA)

HSP 1 Score: 243 bits (621), Expect = 2.410e-73
Identity = 122/226 (53.98%), Postives = 158/226 (69.91%), Query Frame = 2 
Query:  134 AARSCPLGFPAAASRRGYKSTTTAMSAPGGNELVMDAFAMRQFTDESYTGTKVAYDPQEFEDKVNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVTGYEARTAKELPILSRWFECGTVE-TPEAKFLDIILYSREQIRKETAAMGKEKEDSEAPWGIISVKSQDVDHEIPMQPITMMRNALGKQEGGSGVPLEREKYMQSVEFWRDHAPVK 808
            A  +C L F  +   RG  S + + + P      +DAF +RQF D +YTGT+VA+D  +FE ++N    +    L +GYAPFCKH+FVPNF       + ITP+NE LL +GY+ART +ELP+L RWF   ++   P AK+LD+ILYSREQIRKE AAMG+  +   + WGIISVK+QDVD+E+PMQPITMMRN LGK+EGGSGVPL RE Y +SV+FW  HAP+K
Sbjct:   12 AGSACSLAFVLS---RGLNSLSMSAT-PTARIFALDAFVLRQFDDAAYTGTRVAWDKADFESRINAAHESGASPLVDGYAPFCKHLFVPNFTPAIMPYLPITPDNEGLLRSGYDARTEQELPVLCRWFPAASMPLAPRAKYLDVILYSREQIRKEAAAMGRADDGETSAWGIISVKAQDVDYELPMQPITMMRNTLGKEEGGSGVPLVREAYAKSVDFWSKHAPLK 233
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig80.16266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP80_ECTSI4.750e-16998.41Flagellar associated protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S1TVC6_9STRA4.640e-8163.94Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3Y2J4_HETAK9.820e-7961.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0M0KA33_9EUKA2.120e-7661.54Flagellar associated protein n=1 Tax=Chrysochromul... [more]
A0A7S2UWN7_9STRA3.400e-7663.73Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4FA99_CHRCT3.860e-7561.19Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A835YXC5_9STRA1.080e-7456.22Flagellar associated protein (Fragment) n=1 Tax=Tr... [more]
K3X1V7_GLOUD4.620e-7458.38Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A0L0GAW9_9EUKA7.930e-7460.62Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A7S0P3Z7_9EUKA2.410e-7353.98Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig80contigE-siliculosus-1a_M_contig80:441523..447123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size756
Model size1785
Exons7
Ec32 orthologEc-08_000490.1
Ec32 ortholog descriptionflagellar associated protein
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs29VSF@1,2RXMS@2759
EggNOG free text desc.Protein of unknown function (DUF3228)
Seed eggNOG ortholog2880.D7FP80
Seed ortholog evalue1.8e-136
Seed ortholog score491.9
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936216.3224728-UTR-E-siliculosus-1a_M_contig80:441522..4415771622936216.3224728-UTR-E-siliculosus-1a_M_contig80:441522..441577Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 441523..441577 +
1696250980.8438575-UTR-E-siliculosus-1a_M_contig80:441522..4415771696250980.8438575-UTR-E-siliculosus-1a_M_contig80:441522..441577Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 441523..441577 +
1622936216.507878-UTR-E-siliculosus-1a_M_contig80:446149..4471231622936216.507878-UTR-E-siliculosus-1a_M_contig80:446149..447123Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 446150..447123 +
1696250980.9375944-UTR-E-siliculosus-1a_M_contig80:446149..4471231696250980.9375944-UTR-E-siliculosus-1a_M_contig80:446149..447123Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 446150..447123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936216.3887842-CDS-E-siliculosus-1a_M_contig80:441577..4417121622936216.3887842-CDS-E-siliculosus-1a_M_contig80:441577..441712Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 441578..441712 +
1696250980.857424-CDS-E-siliculosus-1a_M_contig80:441577..4417121696250980.857424-CDS-E-siliculosus-1a_M_contig80:441577..441712Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 441578..441712 +
1622936216.4073548-CDS-E-siliculosus-1a_M_contig80:442378..4424271622936216.4073548-CDS-E-siliculosus-1a_M_contig80:442378..442427Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 442379..442427 +
1696250980.8686466-CDS-E-siliculosus-1a_M_contig80:442378..4424271696250980.8686466-CDS-E-siliculosus-1a_M_contig80:442378..442427Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 442379..442427 +
1622936216.4238-CDS-E-siliculosus-1a_M_contig80:442836..4429191622936216.4238-CDS-E-siliculosus-1a_M_contig80:442836..442919Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 442837..442919 +
1696250980.8794358-CDS-E-siliculosus-1a_M_contig80:442836..4429191696250980.8794358-CDS-E-siliculosus-1a_M_contig80:442836..442919Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 442837..442919 +
1622936216.4367228-CDS-E-siliculosus-1a_M_contig80:443494..4435381622936216.4367228-CDS-E-siliculosus-1a_M_contig80:443494..443538Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 443495..443538 +
1696250980.889041-CDS-E-siliculosus-1a_M_contig80:443494..4435381696250980.889041-CDS-E-siliculosus-1a_M_contig80:443494..443538Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 443495..443538 +
1622936216.4550343-CDS-E-siliculosus-1a_M_contig80:443988..4441121622936216.4550343-CDS-E-siliculosus-1a_M_contig80:443988..444112Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 443989..444112 +
1696250980.8993616-CDS-E-siliculosus-1a_M_contig80:443988..4441121696250980.8993616-CDS-E-siliculosus-1a_M_contig80:443988..444112Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 443989..444112 +
1622936216.470277-CDS-E-siliculosus-1a_M_contig80:444864..4449471622936216.470277-CDS-E-siliculosus-1a_M_contig80:444864..444947Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 444865..444947 +
1696250980.9083214-CDS-E-siliculosus-1a_M_contig80:444864..4449471696250980.9083214-CDS-E-siliculosus-1a_M_contig80:444864..444947Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 444865..444947 +
1622936216.4861107-CDS-E-siliculosus-1a_M_contig80:445911..4461491622936216.4861107-CDS-E-siliculosus-1a_M_contig80:445911..446149Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 445912..446149 +
1696250980.9227266-CDS-E-siliculosus-1a_M_contig80:445911..4461491696250980.9227266-CDS-E-siliculosus-1a_M_contig80:445911..446149Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 445912..446149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig80.16266.1prot_E-siliculosus-1a_M_contig80.16266.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig80 441578..446149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig80.16266.1

>prot_E-siliculosus-1a_M_contig80.16266.1 ID=prot_E-siliculosus-1a_M_contig80.16266.1|Name=mRNA_E-siliculosus-1a_M_contig80.16266.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=252bp
MGIRAAACSLLFAARASTACAFRIQAAARSCPLGFPAAASRRGYKSTTTA
MSAPGGNELVMDAFAMRQFTDESYTGTKVAYDPQEFEDKVNEIFRAAGGK
LEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVTGYEARTAKELPIL
SRWFECGTVETPEAKFLDIILYSREQIRKETAAMGKEKEDSEAPWGIISV
KSQDVDHEIPMQPITMMRNALGKQEGGSGVPLEREKYMQSVEFWRDHAPV
K*
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mRNA from alignment at E-siliculosus-1a_M_contig80:441523..447123+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig80.16266.1 ID=mRNA_E-siliculosus-1a_M_contig80.16266.1|Name=mRNA_E-siliculosus-1a_M_contig80.16266.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5601bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:441523..447123+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGAGTCAGCCCGCCGTTCATGAGAGAGAGGCGGCAAGGGTACAAACA
AGTCGATGGGGATTCGAGCAGCCGCGTGCTCTCTGTTGTTCGCTGCTCGC
GCCTCAACTGCTTGCGCTTTCCGGATCCAAGCAGCAGCGCGGTCGTGCCC
TCTCGGATTCCCAGCAGCAGCATCCCGCAGAGGATACAAGGTGTGTTCGG
TGTTCATCCAAGTAGGTTGTCGTGTTGAGACGGCAACGGGCCAATGAGAG
AGTTCGGCACCCATACACAGCGGCTCCCCCTAGAGAGGGACGCCTTGGAC
TGTACGTACTGCATTCAGCATTCAGCCTTGTCGTTAAAGGGACTGAATCG
CGATTTAGCTGTTGGCCCTGTGATTGCGGGCAGCATTGCTGCCACCTTAT
TCCTGTTGCGGGGTGTTCTCTCTGGCGTCACATCCATCTCGGTGCTGGGT
ATATGTAGCTGTGATACATAGGAAATCGAGTACGATTATACCGTCCTTAC
GCACCTGCCGCTGTCATGTTTGATCCCTGCACTACCGTACTGACACCAAG
GCGGTTGGCCTGGCCGTTGCAGCAAGAAAACATTTACCATTGCTACTGCA
CCTATTGTGTGGGGTGTGCTTTCTTGCGTCACGCGCATGTCATGATGGTT
CAGAGACCGCATCTACCGGTCTTGTAGGTAACTGCTGCTGTTGCGTTTTG
CCTGCACTGCCGTATGGTATGGTACTATTTTCACGCGTTTTCAAGGTGTA
CTACTGTAGTCCGAACACGCCGCTCACTCCATGCTTGCCATGGTGTTGTC
AGCGCGTCATGATCCCAGCGCCCCCCTACCCGCTCTTGCTCACTTGTTCT
GGCCAGAGCACAACAACGGCAATGTCGGCTCCAGGGGGCAACGAGCTCGT
AATGGGTGAGAGCAGCAGGCCACGGCCGCCGCAGAATCGGCCCTTACGGC
CGTTAGATAAAACCAAGTTACTCACCAACTGTGTGTATCTGAGTTCAACA
CCATGTCTTGGAATACTACTGCTGTAGGAAGTTGGGTCTCGAGAGTTATG
CATCCGCCCATCCTACAATACATGACACGGCCTATTTCGGGCAATGCGCA
TGGTCTTGCGTCGCCCGCGGGAGGCTTGACACCCACGTCCCGAAGGGAGA
CCTTGTACTACTGTAGGAATCGAACGCTGTCGGCTATGCATGTACGTTTA
CGACTCTAGTGTTCCAACATCTGATGCCTCTACTTCGTCAATGCTGCAAG
CGTTTAACGAGACCTTGCCCCCCCCCCCTCACGCTGGCACATGGCGCGAT
AAACGACAAACCAGACGCCTTCGCGATGCGACAATTTACTGACGAGAGCT
ACACAGGGACCAAGGTGGCCTACGACCCACAGGAGTTCGAGGATAAGGTA
TGTATGCATACGACATCACACAGCGCCTTCGTAATTTTCCTCCTTCATTT
GGCCATACGCATGCAAACAAATGCATTGTCTCTTATTTTATGTGCAAGTA
TCATAAGAGATGAGAGTTTTTGTTTGTGGATGAAAGTGAAACCGTCTCCT
AAACAACTCCTATGTACAGTAGTGGTTTTGTGTTTCATGTTTGGGTTCTT
GGGCGGAAACCACGCCTGCCTGAACCATACAGAAATGGAGCACACGGAAG
CAGACAATACACGCCACAAGAACAAACGTTTGTGCGCTGGCGCTTGTAGT
GCTTTTTTTCGATATGGCGATATGGAATACATACTGCTGAGCGTGCTTGA
ACGTGCCTGCTTCATAGATATCATGTAGTAGCTTTGGCTTTCAGGCGACA
ACGTTTCGTGGTACAACGGAAACAGCAGCGCTTGAGTCATGTGCGCTTCG
TCGTCGTGTAACGGTGCTGCTTGCGACCCCCCACCGATTTTCCTTTTTCT
CGTTTGCGAACCCCCTTTCTGGACACGGCACGACACACGCGACTTCCCCG
ACACGCCTTGACGGAAGCCCAGGTGAACGAAATTTTCAGGGCCGCTGGAG
GGAAGCTGGAAGAAGGGTGAGATGGTTGTCCTGCGCCCACCTTCGTAACC
GCACCGCGATATCACTTCGTGGGGTATGGGGATACCCTACGTTTAGGTCC
GCGGGTCGCCGCGGGGGACGGACTGCTACTGCTCTTGTGTGTCGGCGTGT
ATCTCTGGGGGGTGTATTATATAATTCAGGGGGATGTCGTATATCTTTCA
GGGCGGTCGTGTATTTTTAAGGTATCGTGTATCGTTCGGGGGGTGTCGTG
TATGGGTAAGGGGTACCATGTCGGGAATCTGGTTCGCGTGGCAGTATGAG
GTGTGTCGGGCGTCCGGGGTGTGTAAAGGGTGGCTCAACGCCGACAACAA
ACAGCACGTCGAAATTCCTCTGAAACAAGCATCGCCCCAAAACGAAAAGA
CTAATACTAATACTCCAATCCTGTTGTTGCCCGTCGTCCGTGCTCCTCCG
TGTTTTTTATTTGCAGATACGCCCCGTTCTGCAAGCACGTGTTCGTTCCT
AACTTTGCCGGCGTAAAGACAAGCACGGTCAAGATCACACCGGAGAACGA
AAAGCTGTTGGTCACTGGATACGAGGCTCGAACAGCGAAGGTATTGTAAT
CTGCTCTGTGTGGTGCAACGTATGTACTGTAAAGGTTCTGCAGCTCCACG
CCTGCCTCCGTTCCAGAGTGTTTTTCGTGTACGTCTGTCTGTCGAAAGCA
TGGATCCAGTGGTGGGACTGCTTTTCATGGTAATGCCTCCACCATCAGAG
CGCGCTCTGCCTCCTCCTGACCTTTGTCGCAGTGATTCGACGTAGGGCGA
CTAATGGAAAGCTGCAGCAAAGATATTTCATTCCGGCCGGCCTTCCCTGT
GTTTACCCTCTTGGCCTCCTGGCTACTACCTCCGTTGTGCAAGAATTCCC
TCTACGGGACCCCCGATTCAGGCGTCTGCCGTAATTACTATCGTCGTCTT
CATTTTACACCTTAGTATTCTTGCAATAATCGTGTTCGTACGGCCTTGGG
CAGCGTCGCACATCAAACCGCCCTCTAGGTGTACAGAAGGAGAGGTGAAG
CGCTCTGATGTTTTTTTTTCCAATGATTGTATTGGGTGATGGTCTCTGAT
GTTTTTTTTCCCAACGATTGTATTGGATGATAGTCCCTCAAGAAGAGGGA
CAAGAAAAGCCATACCAAAAAAACAAATTCTCAAAGGGTGCCACCTCCGA
GAAACTTCAATACCTCCCCGCTGAGATTTTCTCGAACTGGTAGGCTTTCT
TGCGACGTTCTGTGTATTTTCTGAAGATTTTCTATCGTGGCTTTTTTCGT
TTTGCTGGTACGGTGTTGCGACGGAAACTCGGCCCGCGGCAGGAACTACC
GATTCTGTCTCGATGGTTCGAGTGCGGCACGGTGGAAACGCCAGAGGCGA
AATTCCTCGACATCATCTTATACAGGTTTGTTCGTGGGATTTGTTCTCTC
ACGTAGCCGGATGTGTCTAGCTGCTCGGGAGCATCTCGTGCTCATGTTGG
GTAGGTGCGACGTACATTGTAGTAGCCCAATGCGTTGATTTCGGGTTCTA
TAGACATCACTCTTGGGGAATAGGGTACCCTGATGCATGCGTCGCCGACA
GTATTGTGTGTCCTTCCGGCGACGCTTGTGTTATCGACGTTTTTTTTTGC
CGTTTGACGTTGTGTTAAGCGTGTGGTTGTGGCGCACAACCTGTCTTGGG
ACGGAATAACCAGTATGTAAACCATGGACGGTGTGGCGCTGTCTAGTGGA
GGACGGAACGTACAAACCTCCTGATTGTACTTTTACGTGCGGTAGATTTG
ATGTTGGTGCACCACAACAGCAACGATACGAAGCGTAAGGCGGTGGCAGC
CCGGTGTGTTGGCCGCCCAAAGCACGAAGCCGCCGTCGTGATGTAGGTCA
AACTCCATCGTGCACTGCTGTCTGGCCTTTGTTTTTGCGTTGTGTTCGTA
CGCTCACCTCGTCGGCATCTTTAGTAATATAGTACTGTATATTGTAGTTA
ACTTCGACAGAGCTCCCCATTTACTTTCTGGCACCTCTGCGGACTTCCCC
CAAGGGCAGAGTTTGCACTCCTTCAAATCTTGCCACTATCCGAGTCTCCC
GGTCTCAAAGTATGCGTCATTCGTGCTCCCGAGTACGCTTACAGAACGTA
CCCCCACTTAGGTATGCTTCATTTGTCCGAGGCTTGTTTCTTATTTTTTC
TGTCGGGTAACCCAACATCGATTATTCTGTTATTTCCGTGTAGGTGTAAT
TGACTGTTGCGCCTGTTCTTGTTGTCGGCTTTTTATTCTTCTGTCTTACC
GCGACTGAAGTTCGTAACTACTACATGTAGGTTCTTCCCTTAGTTCTGTA
TGTCCCTCGTGCTTGCTTTTCGATGACTCGTGTATCCAGCCGAGAGCAGA
TCCGTAAGGAAACCGCCGCGATGGGGAAGGAGAAGGAAGACTCGGAGGCC
CCGTGGGGGATAATCTCGGTCAAGTCGCAGGACGTGGACCACGAGATCCC
AATGCAGCCCATCACCATGATGCGCAACGCGCTTGGGAAGCAGGAGGGGG
GGTCTGGAGTGCCTTTGGAGCGGGAGAAATACATGCAGAGTGTTGAATTT
TGGAGGGATCACGCCCCTGTAAAATAGCTTATTACGGGGCTTATCGTATA
CTTGTAGCTGCTGAGCGAGCGTGGCTGTTGGAGGAGTCCTTGGAGGAGGC
CCCACCACTTAACATTGGAACCTCATACCTTTGCCTAAGGCTCGTTTCTT
GCTTCCTCTGTGGGAAAACTCAACAGCGATGATATTGGTATTAGTATGGG
ACTCTTACCTATTGTGGTACCTGATCTTACCGTCAAGTTCCGCAGTTCCT
CCGTGAGGTGTCCAAACAGTGATTTTTGTTCCTGTACTGCATGCATATAT
AATAGTAGGGTTCTCAACTGAGCACCTCCTCTTCTTATGGCCAATTGAGC
CTGAAGTTGTTTGCTAACTCCTATGTGGTCAAGTGGCGGCGGGTGCTGGG
TTTATTCCACTGCTCTACAACAATCGCCTCCAAGAAGTTCATTTTTCAGA
TCGGTGGTTTTCGTGGTGCACCCAGACCCGTGAAGCTGGCAGGTCAGAGT
TCCGCATTCTGTTGTTGGGACGGGTGTGTATGTGTGGTTTTTGCCCTCTT
TGCTCGGATTTATTTGTGCTTCGTTGCCACTGGTATTATTCCCTCTCGTC
GTCCCACTTGTTTCGTCGCCGGATTCACTTTTTTCGAACCCGCGCCTACG
TTTCGGGCTCTACTGCTGTGTGTTGTAGCCAAATGAGAGTGTTCGTGGGA
CGGAGTCTATCAGTGCGCGCGGCCAGAAACCTGAAGCAGGTCGGCACCTT
TACAGGCTTGCCCTCTTTCCTGTATCCTGTGAGCTATTCAGTGGCATTTT
TTATTCAGAGGGTCCTGCTGACAGGTGTACGAGCTTTACTTGTGACAAAA
CACTCTGCTGCGCACCCAAGCATGGCGCACTCACTCACGGCGAAAAAGGC
TCGTGTTCGAAAATTGTTGAGCGTAGATGGCAACGACAGCTATGTAGCTT
CGTGTTTTGTCACCCGTGGACCTTCACTGTTAGGGTTCCTGTGCCCCAAG
C
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig80:441523..447123+

>mRNA_E-siliculosus-1a_M_contig80.16266.1 ID=mRNA_E-siliculosus-1a_M_contig80.16266.1|Name=mRNA_E-siliculosus-1a_M_contig80.16266.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1512bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:441523..447123+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGGATTCGAGCAGCCGCGTGCTCTCTGTTGTTCGCTGCTCGCGCCTC
AACTGCTTGCGCTTTCCGGATCCAAGCAGCAGCGCGGTCGTGCCCTCTCG
GATTCCCAGCAGCAGCATCCCGCAGAGGATACAAGATGGGGATTCGAGCA
GCCGCGTGCTCTCTGTTGTTCGCTGCTCGCGCCTCAACTGCTTGCGCTTT
CCGGATCCAAGCAGCAGCGCGGTCGTGCCCTCTCGGATTCCCAGCAGCAG
CATCCCGCAGAGGATACAAGAGCACAACAACGGCAATGTCGGCTCCAGGG
GGCAACGAGCTCGTAATGGAGCACAACAACGGCAATGTCGGCTCCAGGGG
GCAACGAGCTCGTAATGGACGCCTTCGCGATGCGACAATTTACTGACGAG
AGCTACACAGGGACCAAGGTGGCCTACGACCCACAGGAGTTCGAGGATAA
GACGCCTTCGCGATGCGACAATTTACTGACGAGAGCTACACAGGGACCAA
GGTGGCCTACGACCCACAGGAGTTCGAGGATAAGGTGAACGAAATTTTCA
GGGCCGCTGGAGGGAAGCTGGAAGAAGGGTGAACGAAATTTTCAGGGCCG
CTGGAGGGAAGCTGGAAGAAGGATACGCCCCGTTCTGCAAGCACGTGTTC
GTTCCTAACTTTGCCGGCGTAAAGACAAGCACGGTCAAGATCACACCGGA
GAACGAAAAGCTGTTGGTCACTGGATACGAGGCTCGAACAGCGAAGATAC
GCCCCGTTCTGCAAGCACGTGTTCGTTCCTAACTTTGCCGGCGTAAAGAC
AAGCACGGTCAAGATCACACCGGAGAACGAAAAGCTGTTGGTCACTGGAT
ACGAGGCTCGAACAGCGAAGGAACTACCGATTCTGTCTCGATGGTTCGAG
TGCGGCACGGTGGAAACGCCAGAGGCGAAATTCCTCGACATCATCTTATA
CAGGAACTACCGATTCTGTCTCGATGGTTCGAGTGCGGCACGGTGGAAAC
GCCAGAGGCGAAATTCCTCGACATCATCTTATACAGCCGAGAGCAGATCC
GTAAGGAAACCGCCGCGATGGGGAAGGAGAAGGAAGACTCGGAGGCCCCG
TGGGGGATAATCTCGGTCAAGTCGCAGGACGTGGACCACGAGATCCCAAT
GCAGCCCATCACCATGATGCGCAACGCGCTTGGGAAGCAGGAGGGGGGGT
CTGGAGTGCCTTTGGAGCGGGAGAAATACATGCAGAGTGTTGAATTTTGG
AGGGATCACGCCCCTGTAAAATAGCCGAGAGCAGATCCGTAAGGAAACCG
CCGCGATGGGGAAGGAGAAGGAAGACTCGGAGGCCCCGTGGGGGATAATC
TCGGTCAAGTCGCAGGACGTGGACCACGAGATCCCAATGCAGCCCATCAC
CATGATGCGCAACGCGCTTGGGAAGCAGGAGGGGGGGTCTGGAGTGCCTT
TGGAGCGGGAGAAATACATGCAGAGTGTTGAATTTTGGAGGGATCACGCC
CCTGTAAAATAG
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