mRNA_E-siliculosus-1a_M_contig8.16159.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig8.16159.1 vs. uniprot
Match: D8LQC6_ECTSI (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC6_ECTSI) HSP 1 Score: 301 bits (771), Expect = 3.050e-97 Identity = 294/340 (86.47%), Postives = 295/340 (86.76%), Query Frame = 1
Query: 82 MSEINVSKLKVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTVGDAATEAGNGTAAEPPAEPVVEATSATTAEXXXXXXXXXXXXTTADGEVAADTXXXXXXXXXXXXXXXXAEAMRLAKRVERFGRIAPVTESEVAEKMAMRREKFGLPEPAAGGKQGTKRLLNPEEEAKRKKRMERFGIVDEKEEAAKRAEAEAXXXXXXXXXXXXXXXXXXXXXXVAAKVAWLASEQAEKKAKRIARFGEDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRGGGPVSATAMLSQGLKSSR 1101
MSEINVSKLKVSELK ELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTVGDAATEAGNGTAAEPPAEP VEAT XXXXXXXXXXXX XXXXXXXXXXXXXXXXAEAMRLAKRVERFGRIAPVTESEVAEKMAMRREKFGLPEPAAGGKQGTKR LNPEEEAKRKKRMERFGIVD+KEEAAKR EAEAXXXXXXXXXXXXXXXXXXXXXX AWLASEQAEKKAKRIARFGEDTT XXXXXXXXXXXXXXXXXXXXXX XXXXX XXXXXXXXXXXXXXXXXXX G PVSATAMLSQGLKSSR
Sbjct: 1 MSEINVSKLKVSELKTELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTVGDAATEAGNGTAAEPPAEPAVEATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAMRLAKRVERFGRIAPVTESEVAEKMAMRREKFGLPEPAAGGKQGTKRSLNPEEEAKRKKRMERFGIVDDKEEAAKRTEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXAWLASEQAEKKAKRIARFGEDTTAVAXXXXXXXXXXXXXXXXXXXXXXRSGRGSGGXXXXXRERXXXXXXXXXXXXXXXXXXXXG----PVSATAMLSQGLKSSR 336
BLAST of mRNA_E-siliculosus-1a_M_contig8.16159.1 vs. uniprot
Match: A0A6H5KM35_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM35_9PHAE) HSP 1 Score: 246 bits (629), Expect = 1.980e-77 Identity = 181/207 (87.44%), Postives = 181/207 (87.44%), Query Frame = 1
Query: 82 MSEINVSKLKVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTVGDAATEAGNGTAAEPPAEPVVEATSATTAEXXXXXXXXXXXXTTADGEVAADTXXXXXXXXXXXXXXXXAEAMRLAKRVERFGRIAPVTESEVAEKMAMRREKFGLPEPAAGGKQGTKRLLNPEEEAKRKKRMERFGIVDEKEEAAKRAEAE 702
MSEINVSKLKVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTVGDAATEAGNGTAAEP AE XXXXXXXXXXXX XXXXXXXXXXXXXXXXAEAMRLAKRVERFGRIAPVTE EVAEKMAMRREKFGLPEPAAGGKQGTKR LNPEEEAKRKKRMERFGIVDEKEEAAKRAEAE
Sbjct: 1 MSEINVSKLKVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTVGDAATEAGNGTAAEP-AEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAMRLAKRVERFGRIAPVTEREVAEKMAMRREKFGLPEPAAGGKQGTKRSLNPEEEAKRKKRMERFGIVDEKEEAAKRAEAE 206
BLAST of mRNA_E-siliculosus-1a_M_contig8.16159.1 vs. uniprot
Match: B7G614_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G614_PHATC) HSP 1 Score: 62.4 bits (150), Expect = 1.110e-7 Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 82 MSEINVSKLKVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTVGDAAT 261
M EI++ K+KV+EL+ EL R L V GNK DL RLQA LDEEEFG I P T+ T
Sbjct: 1 MGEIDIKKMKVAELRTELERRGLPVSGNKPDLINRLQARLDEEEFGLIDAPATTINTTMT 60
BLAST of mRNA_E-siliculosus-1a_M_contig8.16159.1 vs. uniprot
Match: A0A835Z395_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z395_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 5.300e-7 Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1
Query: 82 MSEINVSKLKVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFG 219
MSE+N K+KV++LKAELA R+LD G K DL QRLQAALDEEEFG
Sbjct: 1 MSEVNPQKMKVADLKAELAKRNLDSTGLKQDLIQRLQAALDEEEFG 46
BLAST of mRNA_E-siliculosus-1a_M_contig8.16159.1 vs. uniprot
Match: A0A8B9C943_9AVES (SAP domain-containing protein n=2 Tax=Galloanserae TaxID=1549675 RepID=A0A8B9C943_9AVES) HSP 1 Score: 54.7 bits (130), Expect = 2.550e-6 Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1
Query: 85 SEINVSKLKVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFG 219
S +NV KLKVSELK EL R L KG KADL +RLQAALD+EE G
Sbjct: 4 SPVNVKKLKVSELKEELKKRRLSDKGLKADLMERLQAALDQEEAG 48
BLAST of mRNA_E-siliculosus-1a_M_contig8.16159.1 vs. uniprot
Match: A0A7S3LF45_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LF45_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 4.840e-6 Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1
Query: 82 MSEINVSKLKVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAI 225
MSE+++ K+KV+ELKAEL+ R L G KA+L RLQA LDEEEFG +
Sbjct: 1 MSEVDIKKMKVTELKAELSKRGLSTDGLKAELVNRLQARLDEEEFGLV 48
BLAST of mRNA_E-siliculosus-1a_M_contig8.16159.1 vs. uniprot
Match: A0A7S3PZ56_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZ56_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 5.140e-6 Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 82 MSEINVSKLKVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGA--ISMPTPTVGD 252
M E +VSK+KV+EL+A LASR L G KADL+ RLQA LDEEEFG ++ P P+ G+
Sbjct: 1 MGEEDVSKMKVAELRAALASRGLPSDGLKADLSNRLQARLDEEEFGMDEVTPPPPSTGE 59
BLAST of mRNA_E-siliculosus-1a_M_contig8.16159.1 vs. uniprot
Match: UPI0006D4CA98 (heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X1 n=2 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D4CA98) HSP 1 Score: 59.7 bits (143), Expect = 5.400e-6 Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 91 INVSKLKVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTVGDA 255
+N SKLKV EL+AELASR LD KGNKA L +RLQ ALD+E G S TP G+A
Sbjct: 1 MNPSKLKVVELRAELASRGLDTKGNKAALVERLQEALDKETGGVPSEKTPDNGNA 55
BLAST of mRNA_E-siliculosus-1a_M_contig8.16159.1 vs. uniprot
Match: A0A8C8AEA1_9STRI (SAP domain-containing protein n=1 Tax=Otus sunia TaxID=257818 RepID=A0A8C8AEA1_9STRI) HSP 1 Score: 53.1 bits (126), Expect = 5.930e-6 Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 1
Query: 85 SEINVSKLKVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFG 219
S +NV KLKVSELK EL R L KG KA+L +RLQAALD+EE G
Sbjct: 4 SPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDQEEAG 48
BLAST of mRNA_E-siliculosus-1a_M_contig8.16159.1 vs. uniprot
Match: A0A7S1D3T5_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D3T5_CYCTE) HSP 1 Score: 57.8 bits (138), Expect = 8.990e-6 Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 88 EINVSKLKVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPT 243
E+NV K+KVSEL+A L R L +G KADL RLQA LDEEEFG + P T
Sbjct: 26 EMNVKKMKVSELRAALQKRGLSTEGLKADLVNRLQARLDEEEFGMVVAPQST 77 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig8.16159.1 >prot_E-siliculosus-1a_M_contig8.16159.1 ID=prot_E-siliculosus-1a_M_contig8.16159.1|Name=mRNA_E-siliculosus-1a_M_contig8.16159.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=368bp ADGTTQAPIPPGAYPTLISSSASWLATMSEINVSKLKVSELKAELASRSLback to top mRNA from alignment at E-siliculosus-1a_M_contig8:1468473..1471523+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig8.16159.1 ID=mRNA_E-siliculosus-1a_M_contig8.16159.1|Name=mRNA_E-siliculosus-1a_M_contig8.16159.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3051bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1468473..1471523+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:1468473..1471523+ >mRNA_E-siliculosus-1a_M_contig8.16159.1 ID=mRNA_E-siliculosus-1a_M_contig8.16159.1|Name=mRNA_E-siliculosus-1a_M_contig8.16159.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2208bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1468473..1471523+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |