mRNA_E-siliculosus-1a_M_contig8.16114.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16114.1
Unique NamemRNA_E-siliculosus-1a_M_contig8.16114.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig8.16114.1 vs. uniprot
Match: D8LQG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG4_ECTSI)

HSP 1 Score: 442 bits (1136), Expect = 9.640e-146
Identity = 269/290 (92.76%), Postives = 274/290 (94.48%), Query Frame = 3 
Query:  957 SSFLIRQMRANSEHWRVKYPQRTPIPRRPSTRFDARRAAVGPTAAGADSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVEFVSNKRAAGGPAADHGRAVRFDRVVKLILVPSRLDLSAGLSDELWWNEDDYLQFRLGAIVEGSSGVLGRTLRNKRSRRIQPPAAARPTYQHGSKIAQALERMDGHGGGTRPPIRRQFKVHLSSSPSFRVQPVTPPPSPANANESSIGRGAAGDMDHPDASGSSPRRKDHKGWTFAEGFDGLVGLGLLPGSVDP 1826
            SS L   MRANSEHWRV+YPQRTPIPRRPSTRFDARR+AVGP AA ADSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GVE VSNKRAAGGPAADHGRAVRFDRVVKLILVPSRLDLSAGLSDELWWNEDDYLQFRLGAIVEGSSGVLGRTLRNKRS+RIQPPAAARPTYQHG KIAQALERMDGHGG TRPPIRRQFKVHLSSSPSFRVQPVTPPPSPANANE+SIGRG A +MDHPDASGSSPRRK HKGWTFAEGFDGLVGLGLLPGSVDP
Sbjct:   31 SSLLPETMRANSEHWRVRYPQRTPIPRRPSTRFDARRSAVGPAAARADSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGTGVELVSNKRAAGGPAADHGRAVRFDRVVKLILVPSRLDLSAGLSDELWWNEDDYLQFRLGAIVEGSSGVLGRTLRNKRSKRIQPPAAARPTYQHG-KIAQALERMDGHGGSTRPPIRRQFKVHLSSSPSFRVQPVTPPPSPANANETSIGRGVADEMDHPDASGSSPRRKGHKGWTFAEGFDGLVGLGLLPGSVDP 319
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQG4_ECTSI9.640e-14692.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:983570..986907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size852
Model size1744
Exons3
Ec32 orthologEc-10_005540.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16114.1prot_E-siliculosus-1a_M_contig8.16114.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig8 984354..985930 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936179.0717916-UTR-E-siliculosus-1a_M_contig8:983569..9843531622936179.0717916-UTR-E-siliculosus-1a_M_contig8:983569..984353Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 983570..984353 -
1696250964.0124977-UTR-E-siliculosus-1a_M_contig8:983569..9843531696250964.0124977-UTR-E-siliculosus-1a_M_contig8:983569..984353Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 983570..984353 -
1622936179.1139405-UTR-E-siliculosus-1a_M_contig8:986799..9869071622936179.1139405-UTR-E-siliculosus-1a_M_contig8:986799..986907Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 986800..986907 -
1696250964.0568156-UTR-E-siliculosus-1a_M_contig8:986799..9869071696250964.0568156-UTR-E-siliculosus-1a_M_contig8:986799..986907Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 986800..986907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936179.0876994-CDS-E-siliculosus-1a_M_contig8:984353..9847711622936179.0876994-CDS-E-siliculosus-1a_M_contig8:984353..984771Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 984354..984771 -
1696250964.0262785-CDS-E-siliculosus-1a_M_contig8:984353..9847711696250964.0262785-CDS-E-siliculosus-1a_M_contig8:984353..984771Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 984354..984771 -
1622936179.102679-CDS-E-siliculosus-1a_M_contig8:985496..9859301622936179.102679-CDS-E-siliculosus-1a_M_contig8:985496..985930Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 985497..985930 -
1696250964.0370154-CDS-E-siliculosus-1a_M_contig8:985496..9859301696250964.0370154-CDS-E-siliculosus-1a_M_contig8:985496..985930Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 985497..985930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig8.16114.1

>prot_E-siliculosus-1a_M_contig8.16114.1 ID=prot_E-siliculosus-1a_M_contig8.16114.1|Name=mRNA_E-siliculosus-1a_M_contig8.16114.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=284bp
MRANSEHWRVKYPQRTPIPRRPSTRFDARRAAVGPTAAGADSPPPPPLFD
LRQPSSSRRLFLSPAGRRPPDDHRGAQHAAAAAAGGAGVEFVSNKRAAGG
PAADHGRAVRFDRVVKLILVPSRLDLSAGLSDELWWNEDDYLQFRLGAIV
EGSSGVLGRTLRNKRSRRIQPPAAARPTYQHGSKIAQALERMDGHGGGTR
PPIRRQFKVHLSSSPSFRVQPVTPPPSPANANESSIGRGAAGDMDHPDAS
GSSPRRKDHKGWTFAEGFDGLVGLGLLPGSVDP*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig8:983570..986907-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig8.16114.1 ID=mRNA_E-siliculosus-1a_M_contig8.16114.1|Name=mRNA_E-siliculosus-1a_M_contig8.16114.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3338bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:983570..986907- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACCAGGGCCAGACAGCAGTCACAGCTAGTGCACAGCAGAGCACCGCCGTG
GAACCAGCGTGAGCGCAGCACCCGCACACTATCACACTCAAGTCTTCTGC
CTGAAACGGTGAGTGGTATCGAGCATATGCTTAGGTGCTCCTCCTCGCTT
GTGATATTGCTTGAGTGCAAGACCACACCGTGCAGAACCACCCGGAAAAG
CGTCGAATTTTAGAACATTTCCAGCGCTCGCGCTAGCAGGATGTCTATAT
GCATATGTGGTTGCGTGTGCAACGCAGGAGGCGTGCAGAGGCAGGCAATC
AGATGCAACTTGGGGCTCATGGGGCCTGATTGTACTCGCGCGAAATCTCC
CCACCGCTGGCGAGAGCAACATTGGTTGAAAGACAAGTTGATCACACGGC
CGGCGGATAAAAAAATTGACTCCCCTCACTGCCTCTTTTTTGTAACCTCT
CCTTAACGTCACGTGGCATGGACGTCGTTGGGGTCTGACTTGCCGGTAGG
AGGTTTTTCCGCTGAGACGCGTAGCAGGTTCCAGGCGTATAGCCAACTAG
GCTGTGCCTTTCGGACGCTAGCAGGGAGCTGCAAATCTATGCCTCCTGGT
TGGATAGCTGCTGTTGATTCTTGGGGGGACACCTTGGCGATGTCATGTGT
TTTTTGTCTCGCTGAACTTGGATGACGGCGGATTGGGCACTTTCTCTCGT
TCGTGTAACTGTGCTGTTGCCAACCCGACAGACTGCTGTTGATTGAGCAA
TCGTTACCGGGATCGCGCACACTCTGTCCCCATGACTTGTTGTCATTTCC
TAAACAATGATGACCACTGGCGCCACGCTGTGTTACTGATGCGAAAACAA
CTTTGTACAACTTCCTCCTCCGCACCCAACGGCAAGGACACCAAACACTG
GCGGGTTAACATTTAACATTCCCGCCGCCGACCCCCCACGGCCGCCATCG
TTAACTTCTTCCTTTTTGATTCGCCAGATGCGTGCCAACTCTGAACACTG
GCGAGTGAAGTACCCACAGAGAACTCCCATCCCGAGAAGACCCTCGACGC
GATTCGACGCACGTCGAGCGGCCGTAGGCCCAACAGCAGCAGGGGCGGAT
TCTCCGCCACCGCCGCCGTTGTTCGATCTGAGACAACCCTCTTCGTCGAG
GAGGTTGTTTCTGTCGCCGGCCGGGCGGCGACCGCCGGACGACCACCGTG
GTGCACAGCACGCCGCTGCCGCTGCTGCCGGTGGCGCTGGTGTTGAGTTC
GTCAGCAACAAGCGGGCGGCGGGCGGCCCGGCCGCCGATCATGGCCGCGC
GGTCCGCTTCGACCGCGTCGTGAAGCTGATCCTGGTGCCGAGCCGCCTCG
ACTTGAGCGCCGGTCTGAGCGACGAGCTCTGGTGGAACGAGGACGACTAC
TTGCAGTTCAGGTGAAGGCAACGGCAGCAGCAGCAGCAGCAGGCTTGGTA
CCATGCGGGGTAATTGCGTTGTTGTCGGGGTTCGCGGCTCTCTGGCTCTC
GGCACGTTTAATGTCACTAGAATTGCTTCGAAGTAGTACTAAACTAGTTT
TCATCACTGATGTGTATCCTTTGCACGCTAGAGTATATGACATTGGAGAG
GGAGACGCGAATCTTGGCACTCGCATCATAAGTTTCCGTACCGAGATGTG
AGGGATAGAATTGTGATATCGAGTTTTATGCTCGCCCAGGACCACACGAC
GACTGGTATGGCGTCTGCAGCGGTATAGACATTTTCGGAGGAACATGGTT
GGTCGATGCAAGCCTCACTGAAGGCTTCGCTTCTCGAAGCGTGATGTCAT
ATTCTTGTTTTTGCATTGAACAACACATTTTTGTTACGAGCTACCTGCCT
CTCTTGATCGATTTGTGTGACTGCTTGGCTGCGAGTTGACTCCGAGCAAC
AGACTCGCCGCTTTGATAACGAATCACAACTTCCAAACGCGACTATGCAC
AGAAAAGTGTGTTGCCATCATGGGACGCAACCAACAGCGCGTGCCTCGCG
TTTACAAAGCATCAAAGAAGTTATGTGTGGGGAGCAATGTTCTGGGAATC
GTTCTGCAAGAAGCGCTGAAGAGATCTTCAACCAACCACTTCCGGTCGTT
CCCTCATGTCCCCAACCCCCCCCCTGTTTTTTTTAGATTGGGTGCCATCG
TGGAGGGTAGTTCCGGGGTATTGGGAAGGACTCTCCGGAATAAGCGATCC
AGGCGCATTCAACCGCCAGCCGCCGCCAGGCCGACCTACCAACACGGATC
TAAGATCGCTCAGGCGCTGGAAAGAATGGACGGCCACGGCGGCGGCACGC
GCCCCCCCATCCGTCGGCAGTTCAAAGTTCATCTGTCGTCTTCCCCCTCC
TTTCGAGTCCAGCCGGTTACCCCGCCCCCTTCTCCAGCCAACGCCAACGA
GAGTTCCATCGGGCGTGGTGCTGCCGGCGACATGGATCACCCCGATGCTT
CAGGGTCTTCCCCCCGGCGTAAGGACCACAAAGGGTGGACCTTTGCGGAG
GGTTTCGATGGCCTGGTTGGCCTTGGTCTCCTACCGGGGTCAGTGGATCC
CTGATCGCGGAAAGTGGTGACGACCGCAGGGGTGGAAATATCTGCTGGCG
AGCGGTCGGAGTCGCGGACAGCCGAGTGGCCGCCGACCTCACAGGGATTG
TATCGTTTTCGCTAGGGGAGTGATGTTGAGGGTGAGGTGTTTCTTTCAAG
AAGTGGCGACAACTGTTCAGCGTATATGGTTCCGTCGAACGGGGAACGGA
CGCGGCACAATGTAGTGTGTGTAGCTGTGATTGTTGTGATAGTGGTGCTC
GTGAAGGCATGGTACTGGCGATTGTGGTTTGCCGCTGGGTGGTGATGTTG
GTGCTGTGAGGACAGTAGTGCGAGTGGGAAGTTTTGCTCTTTTTTTTTCT
TTCTCTGTGCTAGTCACGGAACAATTTTGAAAACAATTTTGAGAAACGGT
TTTGTTGTTTGTGTTGTTGATAAGTTTTGAGTGGAGTGTAGGCATTCTGA
ATTTGGTTCATTTCTATTGTTCAGGGTATGCGTGTGCGTCGATTCTTGGC
GGGAGGGGGGGCAAGGTTGCGATTTTCGTTGCTTCGTGCACCTGTTGCGG
TCGTGGAACATACGCTTGCGTGTTTGCGTGGCCATCTCGAATATTGCCGC
GGAAGTTAAGCTGGTGTTTTTGGCACCTTGCTCTAGCAACGAGAAAGATT
ACTTAACACTACATAATACATGTGTTTGCCCGAATTAACTGACGCCTACG
GAAGGTCGGTCCCATGAATAGGGTGTGCATGCCTCAGGGTGTACGGAACG
GCATCCTGGGCTTATCAAACAACTGTACCTACGGAGAC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:983570..986907-

>mRNA_E-siliculosus-1a_M_contig8.16114.1 ID=mRNA_E-siliculosus-1a_M_contig8.16114.1|Name=mRNA_E-siliculosus-1a_M_contig8.16114.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1704bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:983570..986907- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGTGCCAACTCTGAACACTGGCGAGTGAAGTACCCACAGAGAACTCC
CATCCCGAGAAGACCCTCGACGCGATTCGACGCACGTCGAGCGGCCGTAG
GCCCAACAGCAGCAGGGGCGGATTCTCCGCCACCGCCGCCGTTGTTCGAT
CTGAGACAACCCTCTTCGTCGAGGAGGTTGTTTCTGTCGCCGGCCGGGCG
GCGACCGCCGGACGACCACCGTGGTGCACAGCACGCCGCTGCCGCTGCTG
CCGGTGGCGCTGGTGTTGAGTTCGTCAGCAACAAGCGGGCGGCGGGCGGC
CCGGCCGCCGATCATGGCCGCGCGGTCCGCTTCGACCGCGTCGTGAAGCT
GATCCTGGTGCCGAGCCGCCTCGACTTGAGCGCCGGTCTGAGCGACGAGC
TCTGGTGGAACGAGGACGACTACTTGCAGTTCAGATGCGTGCCAACTCTG
AACACTGGCGAGTGAAGTACCCACAGAGAACTCCCATCCCGAGAAGACCC
TCGACGCGATTCGACGCACGTCGAGCGGCCGTAGGCCCAACAGCAGCAGG
GGCGGATTCTCCGCCACCGCCGCCGTTGTTCGATCTGAGACAACCCTCTT
CGTCGAGGAGGTTGTTTCTGTCGCCGGCCGGGCGGCGACCGCCGGACGAC
CACCGTGGTGCACAGCACGCCGCTGCCGCTGCTGCCGGTGGCGCTGGTGT
TGAGTTCGTCAGCAACAAGCGGGCGGCGGGCGGCCCGGCCGCCGATCATG
GCCGCGCGGTCCGCTTCGACCGCGTCGTGAAGCTGATCCTGGTGCCGAGC
CGCCTCGACTTGAGCGCCGGTCTGAGCGACGAGCTCTGGTGGAACGAGGA
CGACTACTTGCAGTTCAGATTGGGTGCCATCGTGGAGGGTAGTTCCGGGG
TATTGGGAAGGACTCTCCGGAATAAGCGATCCAGGCGCATTCAACCGCCA
GCCGCCGCCAGGCCGACCTACCAACACGGATCTAAGATCGCTCAGGCGCT
GGAAAGAATGGACGGCCACGGCGGCGGCACGCGCCCCCCCATCCGTCGGC
AGTTCAAAGTTCATCTGTCGTCTTCCCCCTCCTTTCGAGTCCAGCCGGTT
ACCCCGCCCCCTTCTCCAGCCAACGCCAACGAGAGTTCCATCGGGCGTGG
TGCTGCCGGCGACATGGATCACCCCGATGCTTCAGGGTCTTCCCCCCGGC
GTAAGGACCACAAAGGGTGGACCTTTGCGGAGGGTTTCGATGGCCTGGTT
GGCCTTGGTCTCCTACCGGGGTCAGTGGATCCCTGAATTGGGTGCCATCG
TGGAGGGTAGTTCCGGGGTATTGGGAAGGACTCTCCGGAATAAGCGATCC
AGGCGCATTCAACCGCCAGCCGCCGCCAGGCCGACCTACCAACACGGATC
TAAGATCGCTCAGGCGCTGGAAAGAATGGACGGCCACGGCGGCGGCACGC
GCCCCCCCATCCGTCGGCAGTTCAAAGTTCATCTGTCGTCTTCCCCCTCC
TTTCGAGTCCAGCCGGTTACCCCGCCCCCTTCTCCAGCCAACGCCAACGA
GAGTTCCATCGGGCGTGGTGCTGCCGGCGACATGGATCACCCCGATGCTT
CAGGGTCTTCCCCCCGGCGTAAGGACCACAAAGGGTGGACCTTTGCGGAG
GGTTTCGATGGCCTGGTTGGCCTTGGTCTCCTACCGGGGTCAGTGGATCC
CTGA
back to top