mRNA_E-siliculosus-1a_M_contig8.16064.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig8.16064.1 vs. uniprot
Match: A0A2H9TN55_9FUNG (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TN55_9FUNG) HSP 1 Score: 58.5 bits (140), Expect = 2.620e-5 Identity = 55/194 (28.35%), Postives = 83/194 (42.78%), Query Frame = 1
Query: 1261 STMHCPGC-QTSHDISDEAP-SIRVSFADGAQKPATLQQLLEDTTQKETVDLAGCQCGA-QITHKSLKYHELPETLVVFVKRVA----ADGTKLDTPLKFG--------LTGTPLQDELYDVKGIIVHDGERSDSGHYSAYVPAEGDGTGWLHVNDSSVTEVGADVVTDQNPAMFVMERQ------GTETVPKV 1779
S +HC C TSH S+ V AD + LQQ + + CG KS+ + P L V +KR + +K++ ++FG +TG + YD+ G++VH+G+ +SGHY ++V A W +NDSSV +V V Q + R+ ET PKV
Sbjct: 222 SRVHCLTCTHTSHTFDPLLDLSLEVRQADSVSRG--LQQFVRPERLSKANRYRCDHCGKLSDADKSMSIYRAPNILTVHLKRFNLTPFGEASKINKHVEFGTELEIGAFITGPKQECSDYDLYGVLVHEGQTCNSGHYHSFVKASNGF--WYSMNDSSVHQVSLSTVLKQRAYLLFYARRMEASAKTMETEPKV 411
BLAST of mRNA_E-siliculosus-1a_M_contig8.16064.1 vs. uniprot
Match: A0A4U0UGE6_9PEZI (USP domain-containing protein n=1 Tax=Friedmanniomyces endolithicus TaxID=329885 RepID=A0A4U0UGE6_9PEZI) HSP 1 Score: 58.2 bits (139), Expect = 4.380e-5 Identity = 82/335 (24.48%), Postives = 139/335 (41.49%), Query Frame = 1
Query: 895 TCYLGSLLQLVSIPSTSMGAAFVQLAKATDNDKRTKLPVTF------DVGNIADQVNSPPAATEDPLLEVHH-----PFIGADGYLGEGFETAS-------------QQHCVDEAHCRLFGRVSEEATKAEFP--VPPPLALSAVKSTSTMHCP-GCQTSHDISDEAPSIRVSF---------ADGAQKPATLQQLLEDTTQKETVDLAGCQCGAQITHKSLKYHELPETLVVFVKRVA-----ADGTKLDTPLKFGL-TGTPLQDELYDVKGIIVHDGERSDSGHYSAYVPAEGDGTGWLHVNDSSVTEVGADVVTDQNP------AMFVMERQ 1755
T LG+L + + ++S+ + + T + + K+ D G+ AD+V S LL+ + PF + G TAS Q+ CV+ F ++ +AE P V +L V +TST C GC ++ P + +S +G K LQ LL ++ T + +C + ++ LPE LVV ++R + D TK+ T + L G L ++ YDV +++H G+ + SGHY+AY G W ++D T+V + V D + AM +++R+
Sbjct: 379 TSLLGALKDVETFGASSLHVNLLNVGTKTKSREMGKMKAAIRAAIQRDAGDDADRVRSHLHDVLHRLLDRNASGAVAPFFLQMAFAYGGTGTASGGLSLREEMSGDTQEDCVE-----FFQKLMNVLCEAEDPTAVDGLRSLFEVITTSTDVCEDGCIVDTGMTS-TPEVSISHELFVPETTPVNG--KSHDLQTLLANSMTSSTEQVC-TKCKTGTVSRVKRFATLPEQLVVEIRRASFDRATGDQTKITTEVVLPLDAGIQLVEQQYDVVAVVMHRGQHTHSGHYTAY---RKQGAEWFLMDDEEATKVLPEDVKDNSDKWTGHSAMILLKRR 701
BLAST of mRNA_E-siliculosus-1a_M_contig8.16064.1 vs. uniprot
Match: A0A024TBY7_9STRA (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBY7_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 5.550e-5 Identity = 92/364 (25.27%), Postives = 136/364 (37.36%), Query Frame = 1
Query: 814 AGPILAPGARGGIARVKQKR----GIQNGGNTCYLGSLLQ-LVSIPSTSMGAAFVQ-LAKATDNDKRTKLPVTFDVGN----------IADQVNSPPAATEDPLLEVHHPFIGADGYLGEGFETASQQ-------HCVDEAHCRLFGRVSEEATKAEFPVPPPLALSAVKST-------STMHCPGCQTSHDISDEAPSIRVSFADGAQKPATLQQLLEDTTQKETVDLA------GCQCGAQITHKSLKYHELPETLVVFVKRVAADGTKLDTPLKFGLT--------------GTPLQDELYDVKGIIVHDGERSDSGHYSAYVPAEGDGTGWLHVNDSSVTEVGADVVTDQNPAMFVMERQ 1755
AG I+A + R Q R G+ N GNTCYL S+LQ LV P AF Q L N TK G+ ++SP A P + + + +GF Q+ H +D H +A PLA S + + S + C C+ + + + + + G +++ L T ET+D A GC ++ + K L H++P LV+ +KR A KL ++F T P + Y + ++VH G D GHY A+V + GT W +ND +V V V Q M RQ
Sbjct: 55 AGAIVAVDDIHALVRWAQPRKIGPGLMNLGNTCYLNSVLQCLVYSP------AFAQYLIPRATNQPATKHITPHAGGSPFHAEKAMARFLSLMHSPTA----PRVMQPRDIVVNLKQIAKGFRIGRQEDSHEFFRHLMDALH-------KASLRQAGLTDKSPLANSTLVHSVFGGTLRSHVQCAKCKYVSERVEPFLDLSLEVSSGI---SSISAALAHFTAVETLDAANAWKCSGCSQRSKAS-KGLNVHDIPNALVLHLKRFDAFHGKLKKHIEFSETLNLNNGGAKGGRILSKPHEYATYALTAVLVHAGSSPDCGHYYAFVKSPA-GT-WHEMNDETVRVVNIHTVLQQRAYMLFYSRQ 395 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig8.16064.1 >prot_E-siliculosus-1a_M_contig8.16064.1 ID=prot_E-siliculosus-1a_M_contig8.16064.1|Name=mRNA_E-siliculosus-1a_M_contig8.16064.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=395bp MQESSLEDALRKAEEACRRGDDPSPRGAGPILAPGARGGIARVKQKRGIQback to top mRNA from alignment at E-siliculosus-1a_M_contig8:342559..371014- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig8.16064.1 ID=mRNA_E-siliculosus-1a_M_contig8.16064.1|Name=mRNA_E-siliculosus-1a_M_contig8.16064.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=28456bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:342559..371014- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:342559..371014- >mRNA_E-siliculosus-1a_M_contig8.16064.1 ID=mRNA_E-siliculosus-1a_M_contig8.16064.1|Name=mRNA_E-siliculosus-1a_M_contig8.16064.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2370bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:342559..371014- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |