mRNA_E-siliculosus-1a_M_contig8.16209.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16209.1
Unique NamemRNA_E-siliculosus-1a_M_contig8.16209.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16209.1 vs. uniprot
Match: A0A6H5JR33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR33_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.270e-7
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 2 
Query:  116 GRKLRLLS---ELTGLMSRIMWRFTKAHQASSRKALTLG 223
            G  L+L+S   ELTGLMSRIMWRFTKAHQAS+RKAL+LG
Sbjct:   27 GLLLQLISPDVELTGLMSRIMWRFTKAHQASTRKALSLG 65
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16209.1 vs. uniprot
Match: D7FUZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ7_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 3.180e-7
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 2 
Query:  137 SELTGLMSRIMWRFTKAHQASSRKALTLG 223
            +ELTGLMSRIMWRFTKAHQAS+RKALTLG
Sbjct:  363 TELTGLMSRIMWRFTKAHQASTRKALTLG 391
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16209.1 vs. uniprot
Match: A0A6H5K5R4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R4_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.330e-7
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 2 
Query:  140 ELTGLMSRIMWRFTKAHQASSRKALTLG 223
            ELTGLMSRIMWRFTKAHQAS+RKALTLG
Sbjct:  331 ELTGLMSRIMWRFTKAHQASTRKALTLG 358
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16209.1 vs. uniprot
Match: A0A6H5KHD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD1_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 7.250e-7
Identity = 27/34 (79.41%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:  133 VVGTDWPDVPHHVALYQGAPSFIPQGPHLGYLLG 234
            V GTD PDVPH VALYQGAPSF  QGPHLG  LG
Sbjct:   72 VGGTDRPDVPHRVALYQGAPSFHSQGPHLGVPLG 105
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16209.1 vs. uniprot
Match: D8LH35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH35_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 4.210e-6
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:  140 ELTGLMSRIMWRFTKAHQASSRKALTLG 223
            ELTGLMSR MWRFTKAHQAS+RKA+TLG
Sbjct:  174 ELTGLMSRSMWRFTKAHQASTRKAITLG 201
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16209.1 vs. uniprot
Match: A0A6H5KR20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR20_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 9.190e-6
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 2 
Query:  140 ELTGLMSRIMWRFTKAHQASSRKALTLG 223
            ELTGLM RIMWRFTKAHQAS+RK LTLG
Sbjct:  181 ELTGLMFRIMWRFTKAHQASTRKVLTLG 208
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16209.1 vs. uniprot
Match: A0A6H5KF40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF40_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.100e-5
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:  140 ELTGLMSRIMWRFTKAHQASSRKALTLG 223
            ELTGLMSR+MWRFTKA+QAS+RK LTLG
Sbjct:   74 ELTGLMSRVMWRFTKAYQASTRKTLTLG 101
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JR33_9PHAE1.270e-776.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUZ7_ECTSI3.180e-793.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5R4_9PHAE4.330e-796.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHD1_9PHAE7.250e-779.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH35_ECTSI4.210e-689.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR20_9PHAE9.190e-689.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF40_9PHAE1.100e-585.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:2052677..2053898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size195
Model size347
Exons2
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-10_002010.1
Ec32 ortholog descriptionhypothetical protein
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16209.1prot_E-siliculosus-1a_M_contig8.16209.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig8 2052750..2053819 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936151.7205899-UTR-E-siliculosus-1a_M_contig8:2052676..20527491622936151.7205899-UTR-E-siliculosus-1a_M_contig8:2052676..2052749Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 2052677..2052749 -
1696250951.2827082-UTR-E-siliculosus-1a_M_contig8:2052676..20527491696250951.2827082-UTR-E-siliculosus-1a_M_contig8:2052676..2052749Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 2052677..2052749 -
1622936151.7777905-UTR-E-siliculosus-1a_M_contig8:2053819..20538981622936151.7777905-UTR-E-siliculosus-1a_M_contig8:2053819..2053898Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 2053820..2053898 -
1696250951.3208897-UTR-E-siliculosus-1a_M_contig8:2053819..20538981696250951.3208897-UTR-E-siliculosus-1a_M_contig8:2053819..2053898Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 2053820..2053898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936151.738121-CDS-E-siliculosus-1a_M_contig8:2052749..20528841622936151.738121-CDS-E-siliculosus-1a_M_contig8:2052749..2052884Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 2052750..2052884 -
1696250951.295227-CDS-E-siliculosus-1a_M_contig8:2052749..20528841696250951.295227-CDS-E-siliculosus-1a_M_contig8:2052749..2052884Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 2052750..2052884 -
1622936151.759159-CDS-E-siliculosus-1a_M_contig8:2053759..20538191622936151.759159-CDS-E-siliculosus-1a_M_contig8:2053759..2053819Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 2053760..2053819 -
1696250951.3062098-CDS-E-siliculosus-1a_M_contig8:2053759..20538191696250951.3062098-CDS-E-siliculosus-1a_M_contig8:2053759..2053819Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 2053760..2053819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig8.16209.1

>prot_E-siliculosus-1a_M_contig8.16209.1 ID=prot_E-siliculosus-1a_M_contig8.16209.1|Name=mRNA_E-siliculosus-1a_M_contig8.16209.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=65bp
MSLAQNGKMHRQGRKLRLLSELTGLMSRIMWRFTKAHQASSRKALTLGTS
WDLLRYYCTGYKSY*
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mRNA from alignment at E-siliculosus-1a_M_contig8:2052677..2053898-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig8.16209.1 ID=mRNA_E-siliculosus-1a_M_contig8.16209.1|Name=mRNA_E-siliculosus-1a_M_contig8.16209.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1222bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:2052677..2053898- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCTCGCACTCGCACGCTCGCTACGTGCGAAACCATGCTCGGGAGCCGCGA
GCGGCGTGGATTCACGACATAGCCATGGCATGAGTTTGGCCCAGAACGGA
AAGATGCACCGACAGGGCCGGAAGCTGCGCTTGTTGTCGGTACGGCAGTA
GACTCGTACCCTCACGCTCGGTAGTTAAGGCGGCACTGGAGGTGGCAGGT
TTCCTCTGAAAAAACCCCGGAAAAACCCGGAAACGCCTGCATATCTCAGT
TTTCCAAAGTCTAACTCCAGTACGAAACTTCAATCGCAAATTAACCGTCC
GCGGCGGTCGCTATTGTACAAGGTTAGTATCTGAGATTGTAGCCCTTGCG
ACACACTGCAGACTAGCGGTCTGCGATTTTCCAAACGATCCTTCTATCAT
CGAGATCGGTGAGCTACAAGCAGGATTTTCGAAGCTGCTGTCCGGTCCGG
TTTTGAAACGCTTCAAGCACCTTTGCTTGTGGCTAGACCTACATAAACAT
GACTCCAGGCATTCAAATCGACTATGGCGACGAGTAGGACATGTGAGGGA
AGAGCTGCGCTGAAGTTCGCGGCCCCACACACTCAAACAGGCGCTGTTTC
GCCGTTGCCGTGTGCCTGAAGCGTTTCAAAATCGGGCCGCACAGCAGCTT
CGAAAATCCTGCTTGTATCTCACCGATCTCGATGATAGAAGGATCGTTTG
GAAAATCGCAGACCGCTAGTCTGCAGTGTGTCCCAAGGGCTACAATCTCA
GATACTAACCTTGTACAATAGCGACCGCCGCGGACGGTTAATTTGCGATT
GAAGTTTCGTACTGGAGTTAGACTTTGGAAAACTGAGATATGCAGGCGTT
TCCGGGTTTTTCCGGGTTTTTTTCAGAGGAAACCTGCCACCTCCAGTGCC
GCCTTAACATAGTGTAGTACACAGTACCAGCCGGTATACAGCAGTTAGAC
TGTACACAACTAACCCCTTTTCCCTACTATTTGTGTGAACTCGGTGTGAA
CTCCGTCTTCCCAGGAACTGACTGGCCTGATGTCCCGCATCATGTGGCGC
TTTACCAAGGCGCACCAAGCTTCATCCCGCAAGGCCCTCACCTTGGGTAC
CTCCTGGGACCTACTCCGTTATTATTGTACAGGTTACAAGAGTTATTGAA
AATCCAGGGTACACTACCATCTGCTACACAGAGTTGAGAGGTTCCCTTTA
TACGTATATCAGTTGTTGTAGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:2052677..2053898-

>mRNA_E-siliculosus-1a_M_contig8.16209.1 ID=mRNA_E-siliculosus-1a_M_contig8.16209.1|Name=mRNA_E-siliculosus-1a_M_contig8.16209.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=390bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:2052677..2053898- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGTTTGGCCCAGAACGGAAAGATGCACCGACAGGGCCGGAAGCTGCG
CTTGTTGTCGATGAGTTTGGCCCAGAACGGAAAGATGCACCGACAGGGCC
GGAAGCTGCGCTTGTTGTCGGAACTGACTGGCCTGATGTCCCGCATCATG
TGGCGCTTTACCAAGGCGCACCAAGCTTCATCCCGCAAGGCCCTCACCTT
GGGTACCTCCTGGGACCTACTCCGTTATTATTGTACAGGTTACAAGAGTT
ATTGAGAACTGACTGGCCTGATGTCCCGCATCATGTGGCGCTTTACCAAG
GCGCACCAAGCTTCATCCCGCAAGGCCCTCACCTTGGGTACCTCCTGGGA
CCTACTCCGTTATTATTGTACAGGTTACAAGAGTTATTGA
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