prot_E-siliculosus-1a_M_contig8.16144.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16144.1
Unique Nameprot_E-siliculosus-1a_M_contig8.16144.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length980
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16144.1 vs. uniprot
Match: A0A6H5KWX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX4_9PHAE)

HSP 1 Score: 306 bits (785), Expect = 4.670e-85
Identity = 153/169 (90.53%), Postives = 161/169 (95.27%), Query Frame = 0 
Query:   66 VPLREACGTPRGTSRASHLYRRTRTNECAARRWREAGTLFELRALPRGSDAANNITNRVEGGSRNGLFLPDSGPGPSRPVRNRQRVVEGRTKSRTELKTMLRDSRSGDWRKALRALDGMRQLPGGLLDQKSFCMAITACGRGRQWEQAVRLLREMPTAGLTPNLINYNA 234
            +PLREACGTPRGTSRAS LYRRTRTNECAARRWREAGTLFELRALPRGSDAANNIT+RVEGG+RNGL+LPDS P PSRPV  RQ VVEGRTKSRT+L TMLRDS SGDWRKALRALDGMRQLPGGLLDQ+SFCMAITACGRG+QWEQAVRLLREMPTAGLTPNLI+YNA
Sbjct:    4 LPLREACGTPRGTSRASRLYRRTRTNECAARRWREAGTLFELRALPRGSDAANNITSRVEGGARNGLYLPDSRPRPSRPVGKRQGVVEGRTKSRTKLTTMLRDSGSGDWRKALRALDGMRQLPGGLLDQESFCMAITACGRGKQWEQAVRLLREMPTAGLTPNLISYNA 172
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16144.1 vs. uniprot
Match: A0A6H5K762_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K762_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 1.020e-69
Identity = 137/205 (66.83%), Postives = 153/205 (74.63%), Query Frame = 0 
Query:   25 MLTWLEYLATVLVLGFLVHGGDGFTWSKDIHVSHRCRSHDGVPLREACGTPRGTSRASHLYRRTRTNECAARRWREAGTLFELRALPRGSDAANNITNRVEGGSRNGLFLPDSGPGPSRPVRNRQRVVEGRTKSRTELKTMLRDSRSGDWRKALRALDGMRQLPGGLLDQKSFCMAITACGRGRQWEQAVRLLREMPTAGLTPNL 229
            M TWLE LAT LVLG+ VHGGDGFT S D HVS+R  SHD +P R+ C T R   RAS +YRRTR N  A RRW + G  FELRALP GSDAANNI  R +GG+     L +S  GPSRP R RQ  VE  TKS TE+K ML DSRSGDWRKALRA+DGM++LPG L+DQKS+CMAITACGRG QWEQAVRLLREMPT G  P+L
Sbjct:    1 MPTWLERLATALVLGWSVHGGDGFTGSTDFHVSNRQSSHDVMPPRDTCVTSRRAHRASRVYRRTRANGRAVRRWLKTGMPFELRALPPGSDAANNIA-RADGGNSKRPPLSNSRSGPSRPSRRRQGAVEAGTKSLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDL 204
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16144.1 vs. uniprot
Match: D8LIJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ9_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.210e-22
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 0 
Query:  165 MLRDSRSGDWRKALRALDGMRQLPGGLLDQKSFCMAITACGRGRQWEQAVRLLREMPTAGLTPNLINYNA 234
            M RDSR GD RKALRALDGM++LP  LL QKS CM ITACGRG QWEQAV+LLREMPTAGL+PN+I YNA
Sbjct:    1 MPRDSRGGDRRKALRALDGMKRLPRELLHQKSHCMVITACGRGGQWEQAVKLLREMPTAGLSPNVITYNA 70
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig8.16144.1 vs. uniprot
Match: A0A6H5JAI1_9PHAE (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAI1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.490e-7
Identity = 60/193 (31.09%), Postives = 83/193 (43.01%), Query Frame = 0 
Query:   23 GRMLTWLEYLATVLVLGFLVHGGDGFTWSKDIHVSHRCRS--HDGVPLREACGTPRGTSRASHLYRRTRTNECAARRWREAGTLFELRA--LPRGSDAANNITNRVEGGSRNGLFLPDSGPGP-SRPVRNRQRVVEG-RTKSRTELKTMLRDSRSGDWRKALRALDGMRQLPGGLLDQKSFCMAITACGRGRQ 209
            G M  WLE +A  + L      GDGFT          C       +P    C      ++ S  YR +R         RE G+   L    +P   DA   +   V G +     L   G GP     R+R     G ++KS  +LK+ L +++ GDWR AL ALD  + + GG LD  S+ +AI AC  G+Q
Sbjct:    7 GSMFAWLERIAIAVTLACCTCAGDGFTGLSSAIDKSSCAFGLQGAMPTHSTCSDSELMAKNSRTYRHSR---------RERGSTRHLSGTRMPCELDAGA-VDAGVSGEATRLGVLSRKGEGPLESSTRSRGAARRGGKSKSLVKLKSTLLEAKDGDWRTALAALDEFK-ISGGNLDTTSYNIAIAACSNGKQ 188
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16144.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KWX4_9PHAE4.670e-8590.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K762_9PHAE1.020e-6966.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LIJ9_ECTSI3.210e-2278.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAI1_9PHAE3.490e-731.09PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 160..292
e-value: 1.6E-28
score: 102.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 761..869
e-value: 2.1E-33
score: 117.2
coord: 870..979
e-value: 1.1E-34
score: 121.4
coord: 479..588
e-value: 2.2E-34
score: 120.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 589..747
e-value: 4.2E-54
score: 186.0
coord: 305..467
e-value: 3.9E-53
score: 182.8
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 381..534
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 367..416
e-value: 1.5E-10
score: 41.1
coord: 647..696
e-value: 2.3E-9
score: 37.3
coord: 892..941
e-value: 2.9E-10
score: 40.2
coord: 822..871
e-value: 3.6E-10
score: 39.9
coord: 577..626
e-value: 2.7E-10
score: 40.3
coord: 472..521
e-value: 9.6E-11
score: 41.7
coord: 717..766
e-value: 1.1E-10
score: 41.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 650..684
e-value: 3.1E-4
score: 18.7
coord: 615..649
e-value: 1.5E-6
score: 26.0
coord: 755..789
e-value: 1.7E-5
score: 22.7
coord: 300..334
e-value: 3.5E-5
score: 21.7
coord: 265..299
e-value: 1.1E-5
score: 23.2
coord: 930..964
e-value: 5.0E-7
score: 27.5
coord: 860..894
e-value: 2.9E-5
score: 21.9
coord: 335..369
e-value: 2.5E-6
score: 25.3
coord: 196..228
e-value: 6.3E-5
score: 20.9
coord: 370..404
e-value: 1.3E-7
score: 29.3
coord: 580..614
e-value: 3.3E-6
score: 24.9
coord: 790..824
e-value: 8.6E-6
score: 23.6
coord: 895..929
e-value: 2.9E-6
score: 25.1
coord: 440..474
e-value: 4.7E-7
score: 27.6
coord: 685..719
e-value: 1.3E-6
score: 26.2
coord: 545..579
e-value: 2.7E-5
score: 22.1
coord: 405..439
e-value: 2.1E-7
score: 28.7
coord: 475..509
e-value: 1.8E-7
score: 28.9
coord: 720..754
e-value: 3.0E-7
score: 28.2
coord: 510..544
e-value: 3.7E-6
score: 24.8
coord: 825..859
e-value: 4.2E-7
score: 27.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 545..574
e-value: 2.4E-4
score: 21.2
coord: 790..817
e-value: 3.8E-5
score: 23.6
coord: 440..468
e-value: 2.2E-5
score: 24.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 543..577
score: 11.696
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 963..979
score: 6.281
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 578..612
score: 11.367
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 928..962
score: 11.959
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 823..857
score: 11.619
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 193..227
score: 10.413
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 753..787
score: 11.126
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 263..297
score: 11.498
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 298..332
score: 10.918
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 473..507
score: 12.364
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 893..927
score: 11.411
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 368..402
score: 12.518
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 228..262
score: 9.547
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 613..647
score: 11.674
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 508..542
score: 11.235
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 683..717
score: 11.838
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 333..367
score: 11.663
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 648..682
score: 10.797
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 403..437
score: 11.838
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 438..472
score: 11.849
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 858..892
score: 11.06
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 718..752
score: 11.838
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 788..822
score: 11.356
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 195..359
e-value: 2.4E-9
score: 36.9
NoneNo IPR availablePANTHERPTHR46128:SF17coord: 721..972
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 721..972
NoneNo IPR availablePANTHERPTHR46128:SF17coord: 345..553
coord: 422..728
coord: 616..780
NoneNo IPR availablePANTHERPTHR46128:SF17coord: 191..444
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 191..444
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 345..553
coord: 422..728
coord: 616..780
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 32..42
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 43..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 48..979
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..47
NoneNo IPR availableTMHMMTMhelixcoord: 28..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:1305621..1322567 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16144.1mRNA_E-siliculosus-1a_M_contig8.16144.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig8 1305170..1322653 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig8.16144.1 ID=prot_E-siliculosus-1a_M_contig8.16144.1|Name=mRNA_E-siliculosus-1a_M_contig8.16144.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=980bp
MWYRIRSRASFTTSAAKVEDRAGRMLTWLEYLATVLVLGFLVHGGDGFTW
SKDIHVSHRCRSHDGVPLREACGTPRGTSRASHLYRRTRTNECAARRWRE
AGTLFELRALPRGSDAANNITNRVEGGSRNGLFLPDSGPGPSRPVRNRQR
VVEGRTKSRTELKTMLRDSRSGDWRKALRALDGMRQLPGGLLDQKSFCMA
ITACGRGRQWEQAVRLLREMPTAGLTPNLINYNAAIAACAKGGQSKEALV
LLKETTAVGLTPDVISYTSAMDACSRGGQWETAVALLKEMNTVGVIPNVI
SYNSAIDACSRGGQWEKALVLLEGLTTVGLSPNVVSYKSAISACSRSGQW
EKVLVLFNEMTAVGLTPDVVSYNSAIGACSKGGQWEKALVLLEEMIAVGL
TPNVIVYTAAIHACSKGGQWEKALVLLEEMIAVGLTPDVISYNSAIGACS
KGGQWEKVLVLFNEMTAVGLTPDVISYNSAIGACSKGGQWEKALVLLEEM
IAVGLTPNVIVYTAVIHACSKGGQWQKALALLKEITAVGLTPDVISYTAT
IDACSRGGQWETALALLKEMTTVGLTPDIICYTSAIDACAKGEQWEEALA
LLKEMPTVGLTPNVISYSSAIDACAKGEQWKEALSLLKEMTAAGLAPDVV
SYTLAIGACSTGGQWETALALLKEMTAVGLTPDVISYTSAIDACSKGGQW
ETALALLKEMTTVGLTPDVISYTSAIDACSKGGQWEKAPALLKEMTAAGL
TPNVISYSSAIDACAKGDHWKEAVALLKEMTAVGLTPDVISYTSAIDACS
KGGQWKMALALLKEMTVVGLTPNAISYNAAIDACSKGGQWEKAPALLKEM
TAVGLIPNVISYSSAIDACAKGDHWKEAVALLKEMTTVGLTPNVISYNAA
IDACSKGGQWKMALALLQEMTVVGLIPDVISYTAAIDACSKGGRWKEGVV
LLENMRRLGFVPDVTTYHALMKMCAKYGD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf