mRNA_E-siliculosus-1a_M_contig77.15839.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig77.15839.1 vs. uniprot
Match: D7FWV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV4_ECTSI) HSP 1 Score: 413 bits (1061), Expect = 1.520e-130 Identity = 231/315 (73.33%), Postives = 237/315 (75.24%), Query Frame = 1
Query: 1 MQQLEQQLNRRRHRDAGGNTSPSRTPPGMKHRSVNVVPALPASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPEPAVLAAGSPXXXXXXX-----AGPSLLDVSFLVASGGWLDLASGKHLQEASGTLCRDCREYVGSHLRVDYSTPRGLWPLRTAGVVLFGRGPGGGGRMLGIGNRAAAASGGVGVRRLAAGFNGKENAGGTGCRTGGSXXXXXXXXXXXXXXXXXXXXXXXQYGWKGLSIPPLRVTTMTWERPLSDLAHGRALPPGLHSLHFSCSFRYFDVGWVSFPTSLLSLSFGQNFDQGI 930
MQQLEQQLNRRRHRDAGGNTSPSRTPPGM+HRSVNVVPALPASP ADPEP+VLA GSP XXXXX GPSLLDVSFLVASGGWLDLASGKHLQEASGTLCRDCREYVGSHLRVDYSTPR LWPLRT GVVLFG+GPGGGGR+ GIGN AAAASGGVGVRRLA GF GKENAGGTG RTG S QYGWKG SIPPLRVTTMTWERPLSDLAHGRALPPGLHSLHF+CSFRYFDVGWVSFPTSLLSLSFGQNFDQ +
Sbjct: 1 MQQLEQQLNRRRHRDAGGNTSPSRTPPGMRHRSVNVVPALPASPPPSRGAAAVGAAASPATA------------------ADPEPSVLAPGSPATXXXXXXXXAGTGPSLLDVSFLVASGGWLDLASGKHLQEASGTLCRDCREYVGSHLRVDYSTPRALWPLRTVGVVLFGKGPGGGGRVHGIGNSAAAASGGVGVRRLAGGFIGKENAGGTGYRTGASSSASGGKGGLLSSRLQQ------QYGWKGRSIPPLRVTTMTWERPLSDLAHGRALPPGLHSLHFACSFRYFDVGWVSFPTSLLSLSFGQNFDQSV 291
BLAST of mRNA_E-siliculosus-1a_M_contig77.15839.1 vs. uniprot
Match: A0A6H5KHB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB9_9PHAE) HSP 1 Score: 352 bits (903), Expect = 4.260e-103 Identity = 181/214 (84.58%), Postives = 183/214 (85.51%), Query Frame = 1
Query: 301 AGPSLLDVSFLVASGGWLDLASGKHLQEASGTLCRDCREYVGSHLRVDYSTPRGLWPLRTAGVVLFGRGPGGGGRMLGIGNRAAAASGGVGVRRLAAGFNGKENAGGTGCRTGGSXXXXXXXXXXXXXXXXXXXXXXXQYGWKGLSIPPLRVTTMTWERPLSDLAHGRALPPGLHSLHFSCSFRYFDVGWVSFPTSLLSLSFGQNFDQGIDSIA 942
AGPSLLDVSFLVASGGWLDLASGKHLQEASGTLCRDCREYVGSHLRVDYSTPR LWPLRTAGVVLFGRGPGGGGRML IGN A ASGGVGVRRLAAGFNGKENAGGTG RTGGS Q+GWKG SIPPLRVTTMTWERPLSDLAHGRALPPGLHSLH +CSFRYFDVGWVSFPTSLLSLSFGQNFDQGIDSIA
Sbjct: 68 AGPSLLDVSFLVASGGWLDLASGKHLQEASGTLCRDCREYVGSHLRVDYSTPRALWPLRTAGVVLFGRGPGGGGRMLSIGNSVATASGGVGVRRLAAGFNGKENAGGTGYRTGGSSSASGGKGGLLPWRLQQQQ----QHGWKGQSIPPLRVTTMTWERPLSDLAHGRALPPGLHSLHLACSFRYFDVGWVSFPTSLLSLSFGQNFDQGIDSIA 277
BLAST of mRNA_E-siliculosus-1a_M_contig77.15839.1 vs. uniprot
Match: D7FWV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV5_ECTSI) HSP 1 Score: 100 bits (250), Expect = 1.220e-18 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1
Query: 1978 FDPSSLNGLVWPEGLKAIQLGRVSRAVNDDRRIHPWGAWDEPEG 2109
FDPSSLNGLVWPEGLKAIQLGRVSRAVNDDRRIHPWGAWDEPEG
Sbjct: 366 FDPSSLNGLVWPEGLKAIQLGRVSRAVNDDRRIHPWGAWDEPEG 409 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig77.15839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig77.15839.1 >prot_E-siliculosus-1a_M_contig77.15839.1 ID=prot_E-siliculosus-1a_M_contig77.15839.1|Name=mRNA_E-siliculosus-1a_M_contig77.15839.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=704bp MQQLEQQLNRRRHRDAGGNTSPSRTPPGMKHRSVNVVPALPASPPPSRGAback to top mRNA from alignment at E-siliculosus-1a_M_contig77:487410..502132+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig77.15839.1 ID=mRNA_E-siliculosus-1a_M_contig77.15839.1|Name=mRNA_E-siliculosus-1a_M_contig77.15839.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=14723bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig77:487410..502132+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig77:487410..502132+ >mRNA_E-siliculosus-1a_M_contig77.15839.1 ID=mRNA_E-siliculosus-1a_M_contig77.15839.1|Name=mRNA_E-siliculosus-1a_M_contig77.15839.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4224bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig77:487410..502132+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |