mRNA_E-siliculosus-1a_F_contig159.3389.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig159.3389.1
Unique NamemRNA_E-siliculosus-1a_F_contig159.3389.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig159.3389.1 vs. uniprot
Match: D7FID9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID9_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 3.300e-27
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 MAWRERQRGRRGEAEAPPAACQANNGEADRAGKFHKTLPHDEFGRVSDIDDGRID 165
            MA RERQRGRRGEAEAPPAAC ANNGEADRAG+FHKTLPHDEFGRVS+I DGRID
Sbjct:    1 MALRERQRGRRGEAEAPPAACHANNGEADRAGEFHKTLPHDEFGRVSNIGDGRID 55
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig159.3389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FID9_ECTSI3.300e-2790.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig159contigE-siliculosus-1a_F_contig159:13745..13909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size165
Model size165
Exons1
Ec32 orthologEc-11_001530.1
Ec32 ortholog descriptionBromoperoxidase/chloroperoxidase, C-terminal
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928103.164805-CDS-E-siliculosus-1a_F_contig159:13744..139091622928103.164805-CDS-E-siliculosus-1a_F_contig159:13744..13909Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig159 13745..13909 -
1696318805.2958028-CDS-E-siliculosus-1a_F_contig159:13744..139091696318805.2958028-CDS-E-siliculosus-1a_F_contig159:13744..13909Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig159 13745..13909 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig159.3389.1prot_E-siliculosus-1a_F_contig159.3389.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig159 13745..13909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig159.3389.1

>prot_E-siliculosus-1a_F_contig159.3389.1 ID=prot_E-siliculosus-1a_F_contig159.3389.1|Name=mRNA_E-siliculosus-1a_F_contig159.3389.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=55bp
MAWRERQRGRRGEAEAPPAACQANNGEADRAGKFHKTLPHDEFGRVSDID
DGRID
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mRNA from alignment at E-siliculosus-1a_F_contig159:13745..13909-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig159.3389.1 ID=mRNA_E-siliculosus-1a_F_contig159.3389.1|Name=mRNA_E-siliculosus-1a_F_contig159.3389.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=165bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig159:13745..13909- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGTGGAGAGAGCGGCAGAGGGGGCGACGGGGAGAAGCGGAGGCACC
ACCGGCTGCGTGCCAGGCGAACAACGGGGAGGCAGATCGGGCCGGAAAGT
TCCACAAGACCTTGCCCCACGACGAGTTCGGCCGAGTAAGCGATATAGAC
GATGGACGGATAGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig159:13745..13909-

>mRNA_E-siliculosus-1a_F_contig159.3389.1 ID=mRNA_E-siliculosus-1a_F_contig159.3389.1|Name=mRNA_E-siliculosus-1a_F_contig159.3389.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig159:13745..13909- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGTGGAGAGAGCGGCAGAGGGGGCGACGGGGAGAAGCGGAGGCACC
ACCGGCTGCGTGCCAGGCGAACAACGGGGAGGCAGATCGGGCCGGAAAGT
TCCACAAGACCTTGCCCCACGACGAGTTCGGCCGAGTAAGCGATATAGAC
GATGGACGGATAGACATGGCGTGGAGAGAGCGGCAGAGGGGGCGACGGGG
AGAAGCGGAGGCACCACCGGCTGCGTGCCAGGCGAACAACGGGGAGGCAG
ATCGGGCCGGAAAGTTCCACAAGACCTTGCCCCACGACGAGTTCGGCCGA
GTAAGCGATATAGACGATGGACGGATAGAC
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