prot_E-siliculosus-1a_M_contig75.15623.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig75.15623.1
Unique Nameprot_E-siliculosus-1a_M_contig75.15623.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length187
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig75.15623.1 vs. uniprot
Match: A0A6H5JE70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE70_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 6.370e-40
Identity = 76/91 (83.52%), Postives = 78/91 (85.71%), Query Frame = 0 
Query:   78 MGSVVLCSFSKATYTTAGVLYILGFIADAFSAFLMITWLHGVFDGGLGVAYEVFVLLLFVHAIVAPLTFLAGSVFAFKAVCTWEQGSGALR 168
            MGSVVLCSFSKAT T A VL ILGFIADAFSA L+ITWLHGVFDGG GVA EVFVLLL +HAI APLTFLAGSVFAFKAV TW QG GA R
Sbjct:    1 MGSVVLCSFSKATSTAAVVLNILGFIADAFSALLLITWLHGVFDGGFGVADEVFVLLLVIHAIAAPLTFLAGSVFAFKAVFTWTQGGGAAR 91
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig75.15623.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JE70_9PHAE6.370e-4083.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 119..129
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..84
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 155..186
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..118
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 130..154
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 85..95
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..54
NoneNo IPR availableTMHMMTMhelixcoord: 131..153
NoneNo IPR availableTMHMMTMhelixcoord: 60..82
NoneNo IPR availableTMHMMTMhelixcoord: 94..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig75contigE-siliculosus-1a_M_contig75:246908..258612 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig75.15623.1mRNA_E-siliculosus-1a_M_contig75.15623.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig75 246703..260082 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig75.15623.1 ID=prot_E-siliculosus-1a_M_contig75.15623.1|Name=mRNA_E-siliculosus-1a_M_contig75.15623.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=187bp
MVETQQPQQLQRQQQQQPTSVFAPEAVVVQQRGGCCSNVPPNVSSAVENT
RNMSVIIIAIHVIPVSVTFIGNFIGIAMGSVVLCSFSKATYTTAGVLYIL
GFIADAFSAFLMITWLHGVFDGGLGVAYEVFVLLLFVHAIVAPLTFLAGS
VFAFKAVCTWEQGSGALRTSPVDMEHPVQGASVQGP*
back to top