mRNA_E-siliculosus-1a_M_contig75.15609.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 424 bits (1090), Expect = 3.030e-149 Identity = 220/224 (98.21%), Postives = 222/224 (99.11%), Query Frame = 1
Query: 85 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFFF 756
MVASQMFLGTAAALIASSTAFVAPVAVRSAAPAS+ASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKP+ EAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFFF
Sbjct: 1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFFF 224
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 382 bits (980), Expect = 1.510e-132 Identity = 195/219 (89.04%), Postives = 208/219 (94.98%), Query Frame = 1
Query: 85 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
MVA+Q+FLG+AA LIASSTAFVAP+AVRSAAPASS+SALKMSAGSDYVATLPGAPF DGKIFDPL+LSDGA P DIKKWREAEIKHGRVAMLASLG+LVAE+YHPLFMG D+IGPA+ HFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDY PGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGML QEL+N DIL
Sbjct: 1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 356 bits (913), Expect = 2.500e-122 Identity = 181/219 (82.65%), Postives = 200/219 (91.32%), Query Frame = 1
Query: 85 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
+ +S MFLGTAA LIASSTAFVAP+AVRSAAPASSASALKMSAGSDYVATLPGAPF DGKIFDPL LSDGA PG+IK WREAEIKHGRVAMLA++G++VAE+YHPLFMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTI A+ PS VTGEGGL+++YSPGDLGFDPLNLKP+D+A L+ M+TKELNNGRLAMIGIAGML QELVN DIL
Sbjct: 2 VASSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 322 bits (826), Expect = 3.930e-109 Identity = 164/216 (75.93%), Postives = 190/216 (87.96%), Query Frame = 1
Query: 94 SQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
S MFLGTAA LIASS AFV P+AVRSAAPASSASALKMSAG+DY+ATLPGA +GKIFD L L+DGA PG+IK WREAEIKHGRVAMLA++G++VAE+YHP FMG D+IGPA+ HFQEI+A+FP+FWA+SLLGMAFIEYNTI A+ PS VTGEGGL+++YSPGDLGFDP +KP+D+A L+ M+ KELNNGRLAMIGI GML QELVNGQDIL
Sbjct: 5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE) HSP 1 Score: 317 bits (811), Expect = 3.040e-107 Identity = 173/219 (79.00%), Postives = 179/219 (81.74%), Query Frame = 1
Query: 85 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
MVASQMF+GTAA LIASSTAFVAP+AVRS S+ LKMSAGSDYVATLPGAPFSDGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGMLAQELVN DIL
Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 308 bits (790), Expect = 3.770e-101 Identity = 197/391 (50.38%), Postives = 207/391 (52.94%), Query Frame = 1
Query: 85 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPAS-SASALKMSAGSDYVATLPGAPFSDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
MVASQMF+GTAA LIASSTAFVAPVAVRS A + S+S+L MSAGSDYVATLPGAPFSDGK IFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGMLAQELVN DIL
Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI) HSP 1 Score: 301 bits (771), Expect = 4.260e-101 Identity = 145/160 (90.62%), Postives = 153/160 (95.62%), Query Frame = 1
Query: 262 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
+IFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGMLAQELVN DIL
Sbjct: 36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI) HSP 1 Score: 259 bits (662), Expect = 8.610e-85 Identity = 125/160 (78.12%), Postives = 139/160 (86.88%), Query Frame = 1
Query: 262 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
KIFDPL L+DGA GDIK WREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISA+FPEFWAFSLL +A IEYNTI A+ PS VTGEGGL+++YSPGDLGFDPLNLKP D+ AL+ M+TKELNNGRLAMIGIAG L QELVN +IL
Sbjct: 15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI) HSP 1 Score: 258 bits (660), Expect = 3.840e-83 Identity = 134/207 (64.73%), Postives = 163/207 (78.74%), Query Frame = 1
Query: 106 LGTAAALIASSTAFVAPVAVR-SAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELV 723
+G A+ AS AF+ P SA P S+A+ +MSAGSDYV+TLPGAPF+DGK++DP+ LS A P DIKKWREAEIKHGRVAMLAS+G+LVAE +HPLF+G D+IGPAI HF+EI+A+FP+FWA +LL +A++EY I F VTGEGG++ DY PGDLGFDPL L PEDE L+VMKTKELN+GRLAMIGI GM+ QELV
Sbjct: 60 VGMASWCFASCEAFIVPTPTTLSARPTSTAA--RMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELV 264
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: A0A6H5JYI8_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE) HSP 1 Score: 234 bits (598), Expect = 2.320e-75 Identity = 138/219 (63.01%), Postives = 145/219 (66.21%), Query Frame = 1
Query: 85 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
MVASQMF+GTAA LIASSTAFV P+A+RS A S+S KMSAGSDYVATLPGAPFSDGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAEE DY PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGMLAQELVN DIL
Sbjct: 1 MVASQMFIGTAATLIASSTAFVGPMAMRSVASTPSSSGFKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEE--------------------------------------------------------------DYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 157 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig75.15609.1 >prot_E-siliculosus-1a_M_contig75.15609.1 ID=prot_E-siliculosus-1a_M_contig75.15609.1|Name=mRNA_E-siliculosus-1a_M_contig75.15609.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=253bp AQTLVIPTRVTTLTSPPLLFHISYPTSKMVASQMFLGTAAALIASSTAFVback to top mRNA from alignment at E-siliculosus-1a_M_contig75:131396..133871- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig75.15609.1 ID=mRNA_E-siliculosus-1a_M_contig75.15609.1|Name=mRNA_E-siliculosus-1a_M_contig75.15609.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2476bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:131396..133871- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig75:131396..133871- >mRNA_E-siliculosus-1a_M_contig75.15609.1 ID=mRNA_E-siliculosus-1a_M_contig75.15609.1|Name=mRNA_E-siliculosus-1a_M_contig75.15609.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1518bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:131396..133871- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |