mRNA_E-siliculosus-1a_M_contig75.15609.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig75.15609.1
Unique NamemRNA_E-siliculosus-1a_M_contig75.15609.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 424 bits (1090), Expect = 3.030e-149
Identity = 220/224 (98.21%), Postives = 222/224 (99.11%), Query Frame = 1
Query:   85 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFFF 756
            MVASQMFLGTAAALIASSTAFVAPVAVRSAAPAS+ASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKP+ EAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFFF
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFFF 224          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 382 bits (980), Expect = 1.510e-132
Identity = 195/219 (89.04%), Postives = 208/219 (94.98%), Query Frame = 1
Query:   85 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
            MVA+Q+FLG+AA LIASSTAFVAP+AVRSAAPASS+SALKMSAGSDYVATLPGAPF DGKIFDPL+LSDGA P DIKKWREAEIKHGRVAMLASLG+LVAE+YHPLFMG D+IGPA+ HFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDY PGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGML QEL+N  DIL
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 356 bits (913), Expect = 2.500e-122
Identity = 181/219 (82.65%), Postives = 200/219 (91.32%), Query Frame = 1
Query:   85 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
            + +S MFLGTAA LIASSTAFVAP+AVRSAAPASSASALKMSAGSDYVATLPGAPF DGKIFDPL LSDGA PG+IK WREAEIKHGRVAMLA++G++VAE+YHPLFMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTI  A+  PS VTGEGGL+++YSPGDLGFDPLNLKP+D+A L+ M+TKELNNGRLAMIGIAGML QELVN  DIL
Sbjct:    2 VASSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 3.930e-109
Identity = 164/216 (75.93%), Postives = 190/216 (87.96%), Query Frame = 1
Query:   94 SQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
            S MFLGTAA LIASS AFV P+AVRSAAPASSASALKMSAG+DY+ATLPGA   +GKIFD L L+DGA PG+IK WREAEIKHGRVAMLA++G++VAE+YHP FMG D+IGPA+ HFQEI+A+FP+FWA+SLLGMAFIEYNTI  A+  PS VTGEGGL+++YSPGDLGFDP  +KP+D+A L+ M+ KELNNGRLAMIGI GML QELVNGQDIL
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 3.040e-107
Identity = 173/219 (79.00%), Postives = 179/219 (81.74%), Query Frame = 1
Query:   85 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
            MVASQMF+GTAA LIASSTAFVAP+AVRS     S+  LKMSAGSDYVATLPGAPFSDGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE                            FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 3.770e-101
Identity = 197/391 (50.38%), Postives = 207/391 (52.94%), Query Frame = 1
Query:   85 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPAS-SASALKMSAGSDYVATLPGAPFSDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
            MVASQMF+GTAA LIASSTAFVAPVAVRS A  + S+S+L MSAGSDYVATLPGAPFSDGK                                                                                                                                                                           IFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 4.260e-101
Identity = 145/160 (90.62%), Postives = 153/160 (95.62%), Query Frame = 1
Query:  262 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
            +IFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 8.610e-85
Identity = 125/160 (78.12%), Postives = 139/160 (86.88%), Query Frame = 1
Query:  262 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
            KIFDPL L+DGA  GDIK WREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISA+FPEFWAFSLL +A IEYNTI  A+  PS VTGEGGL+++YSPGDLGFDPLNLKP D+ AL+ M+TKELNNGRLAMIGIAG L QELVN  +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 3.840e-83
Identity = 134/207 (64.73%), Postives = 163/207 (78.74%), Query Frame = 1
Query:  106 LGTAAALIASSTAFVAPVAVR-SAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELV 723
            +G A+   AS  AF+ P     SA P S+A+  +MSAGSDYV+TLPGAPF+DGK++DP+ LS  A P DIKKWREAEIKHGRVAMLAS+G+LVAE +HPLF+G D+IGPAI HF+EI+A+FP+FWA +LL +A++EY  I   F     VTGEGG++ DY PGDLGFDPL L PEDE  L+VMKTKELN+GRLAMIGI GM+ QELV
Sbjct:   60 VGMASWCFASCEAFIVPTPTTLSARPTSTAA--RMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELV 264          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Match: A0A6H5JYI8_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 2.320e-75
Identity = 138/219 (63.01%), Postives = 145/219 (66.21%), Query Frame = 1
Query:   85 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 741
            MVASQMF+GTAA LIASSTAFV P+A+RS A   S+S  KMSAGSDYVATLPGAPFSDGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAEE                                                              DY PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVGPMAMRSVASTPSSSGFKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEE--------------------------------------------------------------DYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 157          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig75.15609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q9_ECTSI3.030e-14998.21Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q6_ECTSI1.510e-13289.04Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI2.500e-12282.65Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI3.930e-10975.93Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE3.040e-10779.00LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A6H5JWB4_9PHAE3.770e-10150.38LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7S5_ECTSI4.260e-10190.63Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q7_ECTSI8.610e-8578.13Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI3.840e-8364.73Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JYI8_9PHAE2.320e-7563.01LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig75contigE-siliculosus-1a_M_contig75:131396..133871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size759
Model size760
Exons4
Ec32 orthologEc-06_000710.1
Ec32 ortholog descriptionLight harvesting complex protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00194
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGs2BEWM@1,2S15M@2759
EggNOG free text desc.Chlorophyll A-B binding protein
KEGG Pathwayko00196,ko01100,map00196,map01100
KEGG koko:K08914
Seed eggNOG ortholog2880.D7G7Q9
Seed ortholog evalue1.1e-117
Seed ortholog score429.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig75.15609.1prot_E-siliculosus-1a_M_contig75.15609.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig75 131396..133871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936047.5544865-CDS-E-siliculosus-1a_M_contig75:131395..1316831622936047.5544865-CDS-E-siliculosus-1a_M_contig75:131395..131683Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 131396..131683 -
1696250907.3271573-CDS-E-siliculosus-1a_M_contig75:131395..1316831696250907.3271573-CDS-E-siliculosus-1a_M_contig75:131395..131683Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 131396..131683 -
1622936047.5716257-CDS-E-siliculosus-1a_M_contig75:132023..1321071622936047.5716257-CDS-E-siliculosus-1a_M_contig75:132023..132107Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 132024..132107 -
1696250907.3493361-CDS-E-siliculosus-1a_M_contig75:132023..1321071696250907.3493361-CDS-E-siliculosus-1a_M_contig75:132023..132107Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 132024..132107 -
1622936047.5879838-CDS-E-siliculosus-1a_M_contig75:132688..1328111622936047.5879838-CDS-E-siliculosus-1a_M_contig75:132688..132811Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 132689..132811 -
1696250907.365945-CDS-E-siliculosus-1a_M_contig75:132688..1328111696250907.365945-CDS-E-siliculosus-1a_M_contig75:132688..132811Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 132689..132811 -
1622936047.6080153-CDS-E-siliculosus-1a_M_contig75:133607..1338711622936047.6080153-CDS-E-siliculosus-1a_M_contig75:133607..133871Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 133608..133871 -
1696250907.3768203-CDS-E-siliculosus-1a_M_contig75:133607..1338711696250907.3768203-CDS-E-siliculosus-1a_M_contig75:133607..133871Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 133608..133871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig75.15609.1

>prot_E-siliculosus-1a_M_contig75.15609.1 ID=prot_E-siliculosus-1a_M_contig75.15609.1|Name=mRNA_E-siliculosus-1a_M_contig75.15609.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=253bp
AQTLVIPTRVTTLTSPPLLFHISYPTSKMVASQMFLGTAAALIASSTAFV
APVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAA
PGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQE
ISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLG
FDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNF
FF*
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mRNA from alignment at E-siliculosus-1a_M_contig75:131396..133871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig75.15609.1 ID=mRNA_E-siliculosus-1a_M_contig75.15609.1|Name=mRNA_E-siliculosus-1a_M_contig75.15609.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2476bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:131396..133871- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCGCAAACACTGGTCATCCCCACCCGTGTCACAACCTTAACCTCTCCCCC TCTCCTCTTCCACATCTCCTACCCAACAAGCAAGATGGTCGCCTCCCAGA TGTTCCTCGGCACTGCCGCCGCCCTCATCGCCTCCTCGACTGCCTTCGTG GCACCCGTGGCCGTGCGATCTGCGGCACCGGCGTCCTCTGCTTCGGCCCT CAAGATGAGCGCTGGGTCCGATTACGTCGCAACCCTGCCAGGTGCTCCCT TCTCGGATGGAAAGGTGAAACATAACCAGCCAAGTGCGACGAAGGCAGTA TGTCTGATCTGTATGGAGATGTAAAAGGTCGTGCGCCGTGGGTGGCTACA AAGTAGCTTTTTATCGTCATTTTTTTTCTGACCCTCAGAGCTCGTCGCAC TCACGGTGTCCGCACAAAAGAAATCGGCGACACACAGCTTTGGGTTTGGA TAGTGTGGCGTGGCTTTGGACGTGGTGCCTGTACTGTCTACGTGTCTGCT CTCCGCCTGGGGTCCGGATCTGCTGTACATGTTACACACAGCAGTCGCAT CTGACCATGAAAATGATGAAACTCGCTCTATGATGTGGTCTATGAAGTAA AGTACGCACGAGTACGTGTTCTGTTTTTGCTTCGGGTGGCTGCTGTGCGA CTATTTACGGCTACCCTCGGGTACCCAGCCTCTTTGTTTACGCCTGCTGA CTTCCAAGAGACAAAGTTTTTGCTGGTGTCGGAGAGGCGTGCATCCGCTC TGACTAAGTTCCTAGACCTGGCGAGATAACGACTGTGACGCAGAAAAACT CGCACTTTCGTGCTTGCCGTGGGTGCTGCTCACGACAACGGTTTCACACC CCGTTCGCAGCTCGTACTTCTCAGCGGATCGTGAACATGGCAAGAATACT CCGGCCGGGGTAGATATGGAGGGAGACTATGCGACCAGCCCGATGACGAC AAAGCGCTGCCCTACGTACGTAGATCCTGACTAAAATGGGAGTGTTTTCC ATGTTTCTGACTGTTTTTTTTACCCGCTCGCAACGCGTCCTGCCGTTGTT GCGTTTCAAGATTTTCGACCCCCTCAGCTTGTCGGATGGCGCTGCCCCCG GCGACATCAAGAAGTGGCGCGAGGCCGAGATCAAGCACGGGCGCGTGGCC ATGCTTGCGTCCCTCGGGATTCTTGTCGCGGAGGTAAGCTCCCATTCGAA TTAGTCTTGAGAGCGGAAGGATGTTTGGTGTTCTGAATTCAAGGAAGAAT AATGGGTTGAGCGAGCTTGTGCCCTTTTAACAATTGAAATTGCCATGTTT TCTCGCCGTTGATCTTTCTTGGATACCACTATGGTTTCAAGTGAGAAGGC AGGTCCATGCAGCAATGAGCGTCGACGTTGGGGAGGTGATGGACTAACGA GTTTGAGACTCGGCAACGAGAAATTCGACTTTTGCCTTGTCAAGTGTTTT CCCCAAGACTTGCTGAAAACTCTCGCGTAGAATGTGAACACGCACTTGTG TACATAGTATGGACGCAGTATATACGCGCTTTCCATCGTGTCGATGCAGT CTGTTTTTCGTTATCAAGTCAAGCAAATCGAGGTAAAGCATGCTGGTTCA ACCGACTGTTGAAAAGTGCATTTTTCTCCTTCCTGCAAAATCGTGTAGTG CTATATCTACCTCGTACACTTCGTGACAAGATCATCCAGCACCGGTTCTC TGGGCATAGGAAATAAAATGTGCTTACCCCTCCTGCACGCCTCGACGCCC CGTGCCGTCCGCAGGAGTACCACCCTCTGTTCATGGGTAAAGATTTCATC GGCCCGGCCATCATCCACTTTCAGGAGATCTCTGCGCAGTTCCCCGAGGT ATGAGCACGTTTGGTGCCTTCGAAAACTTGACGTGGCCTAGGTTTTTGCG AGCAACCCGACACGTTTCGACAGGGTACACGAGAATATATGCGTGTATTT TGCTGTTCTCACTCATAGTGATTGATGTTGGTGACAATCTCCCGTGTCAC ATCACAGCGCCGCAGACCGATCAGCACGTACGGCAGCACACAGGTGATGC GTTTTTGATGCAAATACCACCATCTACGGGTCCCGTGCCGCTGTTTTCGC TGCACCATGCAGTACAACCGACATGTCTTTTCGCCTCTGTTCCTCACTTC CCCCCTCACCCATATTAATCGTGTCTCCTAAACGTCAGTTCTGGGCGTTC TCCCTCCTGGGCATGGCCTTCATCGAGTACAACACCATCATGACCGCCTT CGACACCCCCAGCGCTGTCACCGGCGAGGGCGGCCTGAAGGAGGACTACA GCCCTGGAGACCTCGGCTTCGACCCCCTCAACCTCAAGCCCGAGGACGAG GCGGCCCTGGACGTGATGAAGACCAAGGAGCTCAACAACGGCCGTTTGGC CATGATCGGCATCGCCGGCATGTTGGCGCAGGAGCTGGTAAACGGGCAGG ACATCCTTCCCAACTTTTTCTTCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig75:131396..133871-

>mRNA_E-siliculosus-1a_M_contig75.15609.1 ID=mRNA_E-siliculosus-1a_M_contig75.15609.1|Name=mRNA_E-siliculosus-1a_M_contig75.15609.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1518bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:131396..133871- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCGCAAACACTGGTCATCCCCACCCGTGTCACAACCTTAACCTCTCCCCC
TCTCCTCTTCCACATCTCCTACCCAACAAGCAAGATGGTCGCCTCCCAGA
TGTTCCTCGGCACTGCCGCCGCCCTCATCGCCTCCTCGACTGCCTTCGTG
GCACCCGTGGCCGTGCGATCTGCGGCACCGGCGTCCTCTGCTTCGGCCCT
CAAGATGAGCGCTGGGTCCGATTACGTCGCAACCCTGCCAGGTGCTCCCT
TCTCGGATGGAAAGGCGCAAACACTGGTCATCCCCACCCGTGTCACAACC
TTAACCTCTCCCCCTCTCCTCTTCCACATCTCCTACCCAACAAGCAAGAT
GGTCGCCTCCCAGATGTTCCTCGGCACTGCCGCCGCCCTCATCGCCTCCT
CGACTGCCTTCGTGGCACCCGTGGCCGTGCGATCTGCGGCACCGGCGTCC
TCTGCTTCGGCCCTCAAGATGAGCGCTGGGTCCGATTACGTCGCAACCCT
GCCAGGTGCTCCCTTCTCGGATGGAAAGATTTTCGACCCCCTCAGCTTGT
CGGATGGCGCTGCCCCCGGCGACATCAAGAAGTGGCGCGAGGCCGAGATC
AAGCACGGGCGCGTGGCCATGCTTGCGTCCCTCGGGATTCTTGTCGCGGA
GATTTTCGACCCCCTCAGCTTGTCGGATGGCGCTGCCCCCGGCGACATCA
AGAAGTGGCGCGAGGCCGAGATCAAGCACGGGCGCGTGGCCATGCTTGCG
TCCCTCGGGATTCTTGTCGCGGAGGAGTACCACCCTCTGTTCATGGGTAA
AGATTTCATCGGCCCGGCCATCATCCACTTTCAGGAGATCTCTGCGCAGT
TCCCCGAGGAGTACCACCCTCTGTTCATGGGTAAAGATTTCATCGGCCCG
GCCATCATCCACTTTCAGGAGATCTCTGCGCAGTTCCCCGAGTTCTGGGC
GTTCTCCCTCCTGGGCATGGCCTTCATCGAGTACAACACCATCATGACCG
CCTTCGACACCCCCAGCGCTGTCACCGGCGAGGGCGGCCTGAAGGAGGAC
TACAGCCCTGGAGACCTCGGCTTCGACCCCCTCAACCTCAAGCCCGAGGA
CGAGGCGGCCCTGGACGTGATGAAGACCAAGGAGCTCAACAACGGCCGTT
TGGCCATGATCGGCATCGCCGGCATGTTGGCGCAGGAGCTGGTAAACGGG
CAGGACATCCTTCCCAACTTTTTCTTCTAATTCTGGGCGTTCTCCCTCCT
GGGCATGGCCTTCATCGAGTACAACACCATCATGACCGCCTTCGACACCC
CCAGCGCTGTCACCGGCGAGGGCGGCCTGAAGGAGGACTACAGCCCTGGA
GACCTCGGCTTCGACCCCCTCAACCTCAAGCCCGAGGACGAGGCGGCCCT
GGACGTGATGAAGACCAAGGAGCTCAACAACGGCCGTTTGGCCATGATCG
GCATCGCCGGCATGTTGGCGCAGGAGCTGGTAAACGGGCAGGACATCCTT
CCCAACTTTTTCTTCTAA
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