mRNA_E-siliculosus-1a_F_contig15862.3373.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15862.3373.1
Unique NamemRNA_E-siliculosus-1a_F_contig15862.3373.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig15862.3373.1 vs. uniprot
Match: A0A6H5JGG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG7_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.640e-8
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  103 MCGAMTVYVLLFCLSHLAADTMTVGSW 183
            MCGAM VYVLLFC SHLAADT TVGSW
Sbjct:    1 MCGAMAVYVLLFCFSHLAADTSTVGSW 27
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BLAST of mRNA_E-siliculosus-1a_F_contig15862.3373.1 vs. uniprot
Match: A0A6H5JR50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR50_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.260e-8
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = -2 
Query:   78 QDPTVIVSAAR*LKQNSNTYTVIAPHMPREPSPAR 182
            QDPTVIVSAAR LKQNSNTYT IAPHMP  P P +
Sbjct:   74 QDPTVIVSAARLLKQNSNTYTAIAPHMP-SPEPRK 107
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BLAST of mRNA_E-siliculosus-1a_F_contig15862.3373.1 vs. uniprot
Match: A0A6H5JZV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZV7_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 7.430e-7
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 1 
Query:  118 TVYVLLFCLSHLAADTMTVGSW 183
            TVYVLLFCLSHLAADTMTVGSW
Sbjct:    7 TVYVLLFCLSHLAADTMTVGSW 28
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BLAST of mRNA_E-siliculosus-1a_F_contig15862.3373.1 vs. uniprot
Match: A0A6H5JQB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQB7_9PHAE)

HSP 1 Score: 45.1 bits (105), Expect = 8.860e-5
Identity = 20/25 (80.00%), Postives = 20/25 (80.00%), Query Frame = 3 
Query:   27 YWIRGRTCSPEEKPREPASRTWLPR 101
            YW    TCSPE KPREPASRTWLPR
Sbjct:   36 YW----TCSPEGKPREPASRTWLPR 56
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15862.3373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGG7_9PHAE1.640e-888.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR50_9PHAE2.260e-880.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZV7_9PHAE7.430e-7100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQB7_9PHAE8.860e-580.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15862contigE-siliculosus-1a_F_contig15862:679..895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size183
Model size185
Exons2
Hectar predicted targeting categorysignal anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928100.5281417-CDS-E-siliculosus-1a_F_contig15862:678..7771622928100.5281417-CDS-E-siliculosus-1a_F_contig15862:678..777Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15862 679..777 +
1696318804.4413369-CDS-E-siliculosus-1a_F_contig15862:678..7771696318804.4413369-CDS-E-siliculosus-1a_F_contig15862:678..777Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15862 679..777 +
1622928100.5410597-CDS-E-siliculosus-1a_F_contig15862:811..8951622928100.5410597-CDS-E-siliculosus-1a_F_contig15862:811..895Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15862 812..895 +
1696318804.4504552-CDS-E-siliculosus-1a_F_contig15862:811..8951696318804.4504552-CDS-E-siliculosus-1a_F_contig15862:811..895Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15862 812..895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15862.3373.1prot_E-siliculosus-1a_F_contig15862.3373.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15862 679..895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15862.3373.1

>prot_E-siliculosus-1a_F_contig15862.3373.1 ID=prot_E-siliculosus-1a_F_contig15862.3373.1|Name=mRNA_E-siliculosus-1a_F_contig15862.3373.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=61bp
QPGITTAADTGFVDVRVHLKKSQENLRAGLGSLGMCGAMTVYVLLFCLSH
LAADTMTVGSW
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mRNA from alignment at E-siliculosus-1a_F_contig15862:679..895+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15862.3373.1 ID=mRNA_E-siliculosus-1a_F_contig15862.3373.1|Name=mRNA_E-siliculosus-1a_F_contig15862.3373.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=217bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15862:679..895+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAACCTGGAATTACTACTGCTGCGGATACTGGATTCGTGGACGTACGTGT
TCACCTGAAGAAAAGCCAAGAGAACCTGCGAGCAGGACTTGGCTCCCTAG
TGAAATCCAAGTGGCTTCCTGGGTTCGGACGAGGGCATGTGTGGAGCTAT
GACAGTGTATGTGTTGCTATTTTGTTTGAGTCATCTAGCTGCTGACACGA
TGACTGTTGGATCTTGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15862:679..895+

>mRNA_E-siliculosus-1a_F_contig15862.3373.1 ID=mRNA_E-siliculosus-1a_F_contig15862.3373.1|Name=mRNA_E-siliculosus-1a_F_contig15862.3373.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=366bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15862:679..895+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAACCTGGAATTACTACTGCTGCGGATACTGGATTCGTGGACGTACGTGT
TCACCTGAAGAAAAGCCAAGAGAACCTGCGAGCAGGACTTGGCTCCCTAC
AACCTGGAATTACTACTGCTGCGGATACTGGATTCGTGGACGTACGTGTT
CACCTGAAGAAAAGCCAAGAGAACCTGCGAGCAGGACTTGGCTCCCTAGG
CATGTGTGGAGCTATGACAGTGTATGTGTTGCTATTTTGTTTGAGTCATC
TAGCTGCTGACACGATGACTGTTGGATCTTGGGGCATGTGTGGAGCTATG
ACAGTGTATGTGTTGCTATTTTGTTTGAGTCATCTAGCTGCTGACACGAT
GACTGTTGGATCTTGG
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