mRNA_E-siliculosus-1a_M_contig75.15595.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig75.15595.1
Unique NamemRNA_E-siliculosus-1a_M_contig75.15595.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig75.15595.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 394 bits (1012), Expect = 5.630e-138
Identity = 199/220 (90.45%), Postives = 209/220 (95.00%), Query Frame = 1 
Query:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVATTRSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 660
            MVA+Q+F+G+AATLIASSTAFVAPMAVRS A   SSS+LKMSAGSDYVATLPGAPF DGKIFDPL LSDGA P DIKKWREAEIKHGRVAMLASLGV+VAEQYHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDYVPGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig75.15595.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 2.080e-134
Identity = 196/219 (89.50%), Postives = 207/219 (94.52%), Query Frame = 1 
Query:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVATTRSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 657
            MVASQMF+GTAA LIASSTAFVAP+AVRS A   ++S+LKMSAGSDYVATLPGAPFSDGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPD EAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig75.15595.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 363 bits (931), Expect = 1.280e-125
Identity = 184/217 (84.79%), Postives = 197/217 (90.78%), Query Frame = 1 
Query:   10 SQMFIGTAATLIASSTAFVAPMAVRSVATTRSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 660
            S MF+GTAATLIASSTAFVAPMAVRS A   S+S+LKMSAGSDYVATLPGAPF DGKIFDPL LSDGA PG+IK WREAEIKHGRVAMLA++GVIVAEQYHP FMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct:    5 SNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig75.15595.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 5.480e-118
Identity = 187/220 (85.00%), Postives = 188/220 (85.45%), Query Frame = 1 
Query:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVATTRSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 660
            MVASQMFIGTAATLIASSTAFVAPMAVRSV TT SS  LKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE                            FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig75.15595.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 6.210e-116
Identity = 216/392 (55.10%), Postives = 218/392 (55.61%), Query Frame = 1 
Query:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVA-TTRSSSSLKMSAGSDYVATLPGAPFSDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 660
            MVASQMFIGTAATLIASSTAFVAP+AVRSVA TT SSSSL MSAGSDYVATLPGAPFSDGK                                                                                                                                                                           IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig75.15595.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 7.820e-112
Identity = 158/161 (98.14%), Postives = 161/161 (100.00%), Query Frame = 1 
Query:  178 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 660
            +IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig75.15595.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 7.980e-110
Identity = 164/217 (75.58%), Postives = 187/217 (86.18%), Query Frame = 1 
Query:   10 SQMFIGTAATLIASSTAFVAPMAVRSVATTRSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 660
            S MF+GTAATLIASS AFV PMAVRS A   S+S+LKMSAG+DY+ATLPGA   +GKIFD L L+DGA PG+IK WREAEIKHGRVAMLA++GV+VAEQYHPFFMGPDYIGPAVDHFQEI+A+FP+FWA+SLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDP  +KP D+A L+ M+ KELNNGRLAMIGI GML QELVN  DILG
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig75.15595.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 3.520e-90
Identity = 130/160 (81.25%), Postives = 143/160 (89.38%), Query Frame = 1 
Query:  178 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 657
            KIFDPLGL+DGA  GDIK WREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISA+FPEFWAFSLL +A IEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+ AL+ M+TKELNNGRLAMIGIAG L QELVNP +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig75.15595.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 270 bits (690), Expect = 3.260e-88
Identity = 134/213 (62.91%), Postives = 168/213 (78.87%), Query Frame = 1 
Query:   22 IGTAATLIASSTAFVAPMAVRSVATTRSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 660
            +G A+   AS  AF+ P    +++   +S++ +MSAGSDYV+TLPGAPF+DGK++DP+GLS  A P DIKKWREAEIKHGRVAMLAS+GV+VAE +HP F+GPDYIGPA+ HF+EI+A+FP+FWA +LL +A++EY  I   F     VTGEGG++ DYVPGDLGFDPL L P+DE  L+VMKTKELN+GRLAMIGI GM+ QELV P  I G
Sbjct:   60 VGMASWCFASCEAFIVPTPT-TLSARPTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig75.15595.1 vs. uniprot
Match: A0A6H5JYI8_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 1.320e-85
Identity = 151/220 (68.64%), Postives = 154/220 (70.00%), Query Frame = 1 
Query:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVATTRSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 660
            MVASQMFIGTAATLIASSTAFV PMA+RSVA+T SSS  KMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE                                                              EDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVGPMAMRSVASTPSSSGFKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE--------------------------------------------------------------EDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 158
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig75.15595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI5.630e-13890.45Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI2.080e-13489.50Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI1.280e-12584.79Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE5.480e-11885.00LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A6H5JWB4_9PHAE6.210e-11655.10LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7S5_ECTSI7.820e-11298.14Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI7.980e-11075.58Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q7_ECTSI3.520e-9081.25Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI3.260e-8862.91Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JYI8_9PHAE1.320e-8568.64LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig75contigE-siliculosus-1a_M_contig75:6898..8782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size663
Model size663
Exons4
Hectar predicted targeting categorychloroplast
BRITEko00000,ko00001,ko00194
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGs2BEWM@1,2S15M@2759
EggNOG free text desc.Chlorophyll A-B binding protein
KEGG Pathwayko00196,ko01100,map00196,map01100
KEGG koko:K08914
Seed eggNOG ortholog2880.D7G7S2
Seed ortholog evalue1.8e-116
Seed ortholog score425.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig75.15595.1prot_E-siliculosus-1a_M_contig75.15595.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig75 6898..8782 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936044.4655874-CDS-E-siliculosus-1a_M_contig75:6897..71731622936044.4655874-CDS-E-siliculosus-1a_M_contig75:6897..7173Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 6898..7173 -
1696250905.9552321-CDS-E-siliculosus-1a_M_contig75:6897..71731696250905.9552321-CDS-E-siliculosus-1a_M_contig75:6897..7173Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 6898..7173 -
1622936044.4847896-CDS-E-siliculosus-1a_M_contig75:7688..77721622936044.4847896-CDS-E-siliculosus-1a_M_contig75:7688..7772Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 7689..7772 -
1696250905.9661925-CDS-E-siliculosus-1a_M_contig75:7688..77721696250905.9661925-CDS-E-siliculosus-1a_M_contig75:7688..7772Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 7689..7772 -
1622936044.5238507-CDS-E-siliculosus-1a_M_contig75:7991..81141622936044.5238507-CDS-E-siliculosus-1a_M_contig75:7991..8114Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 7992..8114 -
1696250905.9749048-CDS-E-siliculosus-1a_M_contig75:7991..81141696250905.9749048-CDS-E-siliculosus-1a_M_contig75:7991..8114Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 7992..8114 -
1622936044.5705924-CDS-E-siliculosus-1a_M_contig75:8602..87821622936044.5705924-CDS-E-siliculosus-1a_M_contig75:8602..8782Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 8603..8782 -
1696250905.9836032-CDS-E-siliculosus-1a_M_contig75:8602..87821696250905.9836032-CDS-E-siliculosus-1a_M_contig75:8602..8782Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 8603..8782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig75.15595.1

>prot_E-siliculosus-1a_M_contig75.15595.1 ID=prot_E-siliculosus-1a_M_contig75.15595.1|Name=mRNA_E-siliculosus-1a_M_contig75.15595.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=221bp
MVASQMFIGTAATLIASSTAFVAPMAVRSVATTRSSSSLKMSAGSDYVAT
LPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVA
EQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAF
DTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLA
MIGIAGMLAQELVNPADILG*
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mRNA from alignment at E-siliculosus-1a_M_contig75:6898..8782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig75.15595.1 ID=mRNA_E-siliculosus-1a_M_contig75.15595.1|Name=mRNA_E-siliculosus-1a_M_contig75.15595.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1885bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:6898..8782- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTCGCCTCCCAGATGTTCATCGGCACTGCCGCCACCCTCATCGCCTC
CTCGACTGCCTTCGTCGCACCGATGGCCGTGCGATCTGTTGCCACTACTC
GTTCCTCCTCGAGCCTCAAGATGAGCGCCGGTTCGGACTACGTCGCAACT
CTGCCCGGAGCTCCCTTTTCTGACGGAAAGGTGAGACGCGTGTGTGATGG
CGTGAGCCAACACTCAAGGTGGTCCTTTCTTTGCATGTAGTCTAGGTCTG
TAGGCTACAACACCCTCGGGACCGCCGCTCTCGAGCAACGTGTATTCGTG
TCCGAAGGCTCGCTCGCTACATAAGAACACCGACTGGCAGTATTTTGTGG
ACGTATGTGCATACATACCTACCAACAATCAGTCACATTGACAAATAACG
CGTGGATCGCTTCAAGGGTATCTTTTTGTGTGGTACATTACAGTTACTGC
TGTAGTTGTCATGTAGATATGTGCAGCATCCTGGGCCCACGCCCACACTT
TGTCATGCCGCTATCCAAAGTATGCTATCCACGACGGAGAGATTGGGAGT
TCGACAGATGAGTTTATCCATCACGGTGCCGCATCTGTGTGAGATTTTAC
CCTCCGGGTCAAATCGTCTCACCCGTTGCGGTCTTTGATCCCCCCTGTCC
AACACCCTCGTGCCTCAGATCTTCGACCCCCTGGGCCTATCCGACGGCGC
CGCCCCCGGGGACATCAAGAAGTGGCGCGAGGCCGAGATCAAGCACGGGC
GCGTGGCCATGCTTGCGTCCCTCGGTGTCATCGTCGCAGAGGTGAGGAAA
ACCATGCACGCGTGAATGTGTTGGAATACGATTGACACATACATTAGCTT
CAGAGAGGGTGGCATGTTGTTTTGTATTCTCCAGCGAAACTTAAATCCTA
CCTTAGACACAACACCTGTTGTGATCGAATCCTTCGTGTTACTCACGATT
TTTCGTCCCGCCTCATTGCATGGTGTTCGTTCTCGTCCCTGTCGCCGTTG
CCCACTCCAGCAATACCACCCTTTCTTCATGGGCCCCGACTACATTGGTC
CCGCCGTGGACCACTTCCAGGAGATCAGCGCGCAGTTCCCTGAGGTGAGA
CCGGGTGTTCGGGGGGATCGCATTTGATGTGTGAGGACATCGAAAAGTCG
GATTTGACAAGTTGTGCTTTGTGCGACTCGGGTCAAAGCACGCAATTCAC
TTGTAGACCGACCGTTGCTGGAGAAGGTACACACGTGATTCCAGCAACGA
ATTTCCTATCCTCCTCTCCTAAAACTGAAAACGAGTCGAAGGGTGTTATG
ATCCACTCCCACCACAGAGTAAGGCACCATCTGCATACTTTGAAACATAA
CATTTGTTCCCATAGTCTTTCTGCCGCCGTGCTGGTATCAGGTGGTTGAC
CAGCCAGTTGTACGCTGCGCTAAGGCTTCGGTAGATTGACCGAATTATCA
AGTATCCTTCTTCCGCGGTACCTACTCGAGTGTTGTTTCGTGACACAACA
TGGATGATGTACTGTCAACGATGCCATGGTCGACGAGTGATGTTTGTTCA
CACAACCATCCCCTCTCTGTGTCTCTCTGCCCGTCATTCCCGTGTCTCCC
AAACCTCAGTTCTGGGCCTTCTCCCTCCTGGGCATGGCCTTCATCGAGTA
CAACACCATCATGACCGCCTTCGACACCCCCAGCGCTGTCACCGGCGAGG
GCGGCCTGAAGGAGGACTACGTCCCGGGAGACCTCGGCTTCGACCCCCTC
AACCTCAAGCCCGACGACGAGGCGGCTCTGGACGTAATGAAGACCAAGGA
GCTGAACAACGGCCGTTTGGCCATGATCGGCATCGCCGGCATGTTGGCGC
AGGAGCTGGTCAACCCGGCCGACATCCTCGGGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig75:6898..8782-

>mRNA_E-siliculosus-1a_M_contig75.15595.1 ID=mRNA_E-siliculosus-1a_M_contig75.15595.1|Name=mRNA_E-siliculosus-1a_M_contig75.15595.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1326bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:6898..8782- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTCGCCTCCCAGATGTTCATCGGCACTGCCGCCACCCTCATCGCCTC
CTCGACTGCCTTCGTCGCACCGATGGCCGTGCGATCTGTTGCCACTACTC
GTTCCTCCTCGAGCCTCAAGATGAGCGCCGGTTCGGACTACGTCGCAACT
CTGCCCGGAGCTCCCTTTTCTGACGGAAAGATGGTCGCCTCCCAGATGTT
CATCGGCACTGCCGCCACCCTCATCGCCTCCTCGACTGCCTTCGTCGCAC
CGATGGCCGTGCGATCTGTTGCCACTACTCGTTCCTCCTCGAGCCTCAAG
ATGAGCGCCGGTTCGGACTACGTCGCAACTCTGCCCGGAGCTCCCTTTTC
TGACGGAAAGATCTTCGACCCCCTGGGCCTATCCGACGGCGCCGCCCCCG
GGGACATCAAGAAGTGGCGCGAGGCCGAGATCAAGCACGGGCGCGTGGCC
ATGCTTGCGTCCCTCGGTGTCATCGTCGCAGAGATCTTCGACCCCCTGGG
CCTATCCGACGGCGCCGCCCCCGGGGACATCAAGAAGTGGCGCGAGGCCG
AGATCAAGCACGGGCGCGTGGCCATGCTTGCGTCCCTCGGTGTCATCGTC
GCAGAGCAATACCACCCTTTCTTCATGGGCCCCGACTACATTGGTCCCGC
CGTGGACCACTTCCAGGAGATCAGCGCGCAGTTCCCTGAGCAATACCACC
CTTTCTTCATGGGCCCCGACTACATTGGTCCCGCCGTGGACCACTTCCAG
GAGATCAGCGCGCAGTTCCCTGAGTTCTGGGCCTTCTCCCTCCTGGGCAT
GGCCTTCATCGAGTACAACACCATCATGACCGCCTTCGACACCCCCAGCG
CTGTCACCGGCGAGGGCGGCCTGAAGGAGGACTACGTCCCGGGAGACCTC
GGCTTCGACCCCCTCAACCTCAAGCCCGACGACGAGGCGGCTCTGGACGT
AATGAAGACCAAGGAGCTGAACAACGGCCGTTTGGCCATGATCGGCATCG
CCGGCATGTTGGCGCAGGAGCTGGTCAACCCGGCCGACATCCTCGGGTAG
TTCTGGGCCTTCTCCCTCCTGGGCATGGCCTTCATCGAGTACAACACCAT
CATGACCGCCTTCGACACCCCCAGCGCTGTCACCGGCGAGGGCGGCCTGA
AGGAGGACTACGTCCCGGGAGACCTCGGCTTCGACCCCCTCAACCTCAAG
CCCGACGACGAGGCGGCTCTGGACGTAATGAAGACCAAGGAGCTGAACAA
CGGCCGTTTGGCCATGATCGGCATCGCCGGCATGTTGGCGCAGGAGCTGG
TCAACCCGGCCGACATCCTCGGGTAG
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