prot_E-siliculosus-1a_M_contig72.15365.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig72.15365.1
Unique Nameprot_E-siliculosus-1a_M_contig72.15365.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length751
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15365.1 vs. uniprot
Match: A0A6H5JAI1_9PHAE (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAI1_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 6.130e-93
Identity = 168/188 (89.36%), Postives = 176/188 (93.62%), Query Frame = 0 
Query:    1 MGLPARGRMPAWLEHIAIAVTLACCTCAGDGFTGLSSAVDKSSCAFGLQGAMPTHSACSNSELMAKNCRTHRHSRRDGGSTRQLSGTRVPCELDAGAVDAGVSGEATRLGVLSRRGEGPLESSTRSRGAASRRGKSKSLVKLKSILLEAKGGDLRTALAALDEFKISGGSLDTTSYNIAIAACSNGRQ 188
            MGLPARG M AWLE IAIAVTLACCTCAGDGFTGLSSA+DKSSCAFGLQGAMPTHS CS+SELMAKN RT+RHSRR+ GSTR LSGTR+PCELDAGAVDAGVSGEATRLGVLSR+GEGPLESSTRSRGAA R GKSKSLVKLKS LLEAK GD RTALAALDEFKISGG+LDTTSYNIAIAACSNG+Q
Sbjct:    1 MGLPARGSMFAWLERIAIAVTLACCTCAGDGFTGLSSAIDKSSCAFGLQGAMPTHSTCSDSELMAKNSRTYRHSRRERGSTRHLSGTRMPCELDAGAVDAGVSGEATRLGVLSRKGEGPLESSTRSRGAARRGGKSKSLVKLKSTLLEAKDGDWRTALAALDEFKISGGNLDTTSYNIAIAACSNGKQ 188
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig72.15365.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAI1_9PHAE6.130e-9389.36PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 358..467
e-value: 5.7E-36
score: 125.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 238..345
e-value: 1.3E-35
score: 125.4
coord: 145..237
e-value: 9.5E-22
score: 79.9
coord: 653..750
e-value: 2.0E-28
score: 101.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 469..652
e-value: 3.6E-56
score: 192.7
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 219..375
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 526..560
e-value: 6.1E-8
score: 30.4
coord: 701..735
e-value: 6.6E-7
score: 27.1
coord: 596..630
e-value: 4.5E-5
score: 21.3
coord: 281..314
e-value: 6.4E-8
score: 30.3
coord: 317..349
e-value: 2.2E-7
score: 28.6
coord: 561..595
e-value: 9.7E-8
score: 29.7
coord: 175..208
e-value: 2.1E-5
score: 22.4
coord: 456..489
e-value: 1.9E-6
score: 25.7
coord: 631..665
e-value: 6.2E-6
score: 24.1
coord: 351..385
e-value: 1.5E-9
score: 35.4
coord: 209..235
e-value: 1.3E-5
score: 23.1
coord: 666..699
e-value: 5.0E-5
score: 21.2
coord: 491..525
e-value: 2.2E-6
score: 25.5
coord: 421..455
e-value: 2.1E-6
score: 25.5
coord: 246..279
e-value: 1.2E-8
score: 32.6
coord: 386..420
e-value: 5.7E-7
score: 27.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 317..345
e-value: 2.4E-5
score: 24.3
coord: 491..520
e-value: 7.9E-4
score: 19.5
coord: 666..695
e-value: 0.0034
score: 17.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 172..219
e-value: 4.7E-9
score: 36.3
coord: 243..292
e-value: 1.8E-13
score: 50.4
coord: 349..397
e-value: 1.1E-11
score: 44.7
coord: 418..467
e-value: 1.2E-8
score: 35.0
coord: 593..642
e-value: 5.3E-9
score: 36.1
coord: 698..745
e-value: 1.5E-10
score: 41.1
coord: 523..572
e-value: 1.3E-15
score: 57.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 279..313
score: 12.704
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 489..523
score: 11.498
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 559..593
score: 12.266
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 172..206
score: 10.994
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 664..698
score: 10.742
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 454..488
score: 11.323
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 699..733
score: 11.992
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 207..237
score: 10.249
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 629..663
score: 12.079
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 384..418
score: 12.057
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 594..628
score: 10.907
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 314..348
score: 10.654
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 524..558
score: 13.055
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 349..383
score: 13.428
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 419..453
score: 11.016
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 244..278
score: 13.482
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 310..434
coord: 137..342
coord: 581..748
coord: 416..582
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 28..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 39..750
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.592

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig72contigE-siliculosus-1a_M_contig72:169161..174783 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig72.15365.1mRNA_E-siliculosus-1a_M_contig72.15365.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig72 169161..174783 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig72.15365.1 ID=prot_E-siliculosus-1a_M_contig72.15365.1|Name=mRNA_E-siliculosus-1a_M_contig72.15365.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=751bp
MGLPARGRMPAWLEHIAIAVTLACCTCAGDGFTGLSSAVDKSSCAFGLQG
AMPTHSACSNSELMAKNCRTHRHSRRDGGSTRQLSGTRVPCELDAGAVDA
GVSGEATRLGVLSRRGEGPLESSTRSRGAASRRGKSKSLVKLKSILLEAK
GGDLRTALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMP
TEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNS
AIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAM
DLLEEVIEQGFPPTTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADV
ISYSSVIAACGRGGRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDR
WKEALHLLTEMKTVGLVPTVISYNTATAACAVNGRWVEALDLLKEMPAQG
IAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDAC
GRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFRE
MPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNS
AIEACGTGEQWELALQLLKGMPTRGLKPDIISYNSAVTACAKSGRWREAL
GLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNL
ITYSAAIGACAKQGRWKEAVDLLTDLRRQGLTPDAQTYLIVISAFQRCSD
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf