mRNA_E-siliculosus-1a_M_contig71.15319.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig71.15319.1
Unique NamemRNA_E-siliculosus-1a_M_contig71.15319.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig71.15319.1 vs. uniprot
Match: D8LDQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ7_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 8.320e-40
Identity = 112/143 (78.32%), Postives = 114/143 (79.72%), Query Frame = 2 
Query:   77 MGLVSGGASMGGDNGGDASMGQAAAAAAGLDALYAEDVDMGEAMPWSFAPDSSGFAVGAASNAPSAQDLSAPAAAA----------------VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPAWGMDSPSPFSPEKWTA 457
            MGLVSGGASMGGDNGGDASMGQAAAA  GLDALYAEDVDMGEAMPWSFAPDS+GFA GAASNAPSAQDLSAPA A+                 XXXXXXX        XXXXXXXXXXXXXXXTAPAWGMDSPSPFSPEKWTA
Sbjct:    1 MGLVSGGASMGGDNGGDASMGQAAAA--GLDALYAEDVDMGEAMPWSFAPDSNGFAGGAASNAPSAQDLSAPATASRSTPTGPVASLVLSAPAXXXXXXXATAESNDAXXXXXXXXXXXXXXXTAPAWGMDSPSPFSPEKWTA 141
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BLAST of mRNA_E-siliculosus-1a_M_contig71.15319.1 vs. uniprot
Match: A0A6H5L6G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6G4_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.610e-36
Identity = 92/145 (63.45%), Postives = 94/145 (64.83%), Query Frame = 2 
Query:   68 GSGMGLVSGGASMGGDNGGDASMGQAAAAAAGLDALYAEDVDMGEAMPWSFAPDSSGFAVGAASNAPSAQDLSAPAAA---------------AVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPAWGMDSPSPFSPEKWTA 457
            G+GMGLV+G ASMGGDNGGDASMGQAAAAAAGLDALYAEDVDMGEAMPWSFAPDSSGFAVGAASNAPSAQDLSAP  A               A                               TAPAWGMDSPS FS EKWTA
Sbjct:  857 GAGMGLVAGSASMGGDNGGDASMGQAAAAAAGLDALYAEDVDMGEAMPWSFAPDSSGFAVGAASNAPSAQDLSAPIMALRSAPTGPVASLVLSAPAAAAGATPATGEPNDASPNTGASASTQSSGTAPAWGMDSPSLFSAEKWTA 1001
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig71.15319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDQ7_ECTSI8.320e-4078.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6G4_9PHAE2.610e-3663.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig71contigE-siliculosus-1a_M_contig71:718205..720051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size384
Model size525
Exons3
Ec32 orthologEc-19_001570.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig71.15319.1prot_E-siliculosus-1a_M_contig71.15319.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig71 718270..719975 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935975.649463-UTR-E-siliculosus-1a_M_contig71:718204..7182691622935975.649463-UTR-E-siliculosus-1a_M_contig71:718204..718269Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig71 718205..718269 -
1696250873.2031734-UTR-E-siliculosus-1a_M_contig71:718204..7182691696250873.2031734-UTR-E-siliculosus-1a_M_contig71:718204..718269Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig71 718205..718269 -
1622935975.7251487-UTR-E-siliculosus-1a_M_contig71:719975..7200511622935975.7251487-UTR-E-siliculosus-1a_M_contig71:719975..720051Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig71 719976..720051 -
1696250873.2634752-UTR-E-siliculosus-1a_M_contig71:719975..7200511696250873.2634752-UTR-E-siliculosus-1a_M_contig71:719975..720051Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig71 719976..720051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935975.665767-CDS-E-siliculosus-1a_M_contig71:718269..7184841622935975.665767-CDS-E-siliculosus-1a_M_contig71:718269..718484Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 718270..718484 -
1696250873.212977-CDS-E-siliculosus-1a_M_contig71:718269..7184841696250873.212977-CDS-E-siliculosus-1a_M_contig71:718269..718484Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 718270..718484 -
1622935975.6856234-CDS-E-siliculosus-1a_M_contig71:719026..7191341622935975.6856234-CDS-E-siliculosus-1a_M_contig71:719026..719134Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 719027..719134 -
1696250873.233911-CDS-E-siliculosus-1a_M_contig71:719026..7191341696250873.233911-CDS-E-siliculosus-1a_M_contig71:719026..719134Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 719027..719134 -
1622935975.7073734-CDS-E-siliculosus-1a_M_contig71:719914..7199751622935975.7073734-CDS-E-siliculosus-1a_M_contig71:719914..719975Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 719915..719975 -
1696250873.2459545-CDS-E-siliculosus-1a_M_contig71:719914..7199751696250873.2459545-CDS-E-siliculosus-1a_M_contig71:719914..719975Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 719915..719975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig71.15319.1

>prot_E-siliculosus-1a_M_contig71.15319.1 ID=prot_E-siliculosus-1a_M_contig71.15319.1|Name=mRNA_E-siliculosus-1a_M_contig71.15319.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=128bp
MGLVSGGASMGGDNGGDASMGQAAAAAAGLDALYAEDVDMGEAMPWSFAP
DSSGFAVGAASNAPSAQDLSAPAAAAVAAAGATPATAESNGAASSNTGAS
ASSQSSATAPAWGMDSPSPFSPEKWTA*
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mRNA from alignment at E-siliculosus-1a_M_contig71:718205..720051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig71.15319.1 ID=mRNA_E-siliculosus-1a_M_contig71.15319.1|Name=mRNA_E-siliculosus-1a_M_contig71.15319.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1847bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig71:718205..720051- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGGGGAAGGAGGCGCCGGCGGGGGCGGCGGTGGGGCCGGTGTGGGTCCGC
TCGGAGGGTTCGGGGTCGGTTCGGGGATGGGGCTTGTTTCGGGCGGCGCG
AGCATGGGCGGCGACAACGGCGGGGATGCCTCGATGGGTGAGAGCGCGAT
GATGGAGACAGATATATGTAGAGAGAAAGAGGCAAAAACAGACTGACAGA
GAGGTAGAGAGAGAGACAGACTGACACACACACAGACAGAGAGAGAGAGA
GAGAGAGAGAGCTGGAGAGCAAGTTGCAAGCGTGGTTTCCCCCGTGCCCT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTCTTGTTTCTTGGTTGCCC
CGTGTTTGTGTGTGTGTGCAGTCGTGGTAGGAAAGTGTGCTGGACTCTGC
CCCCCGCCGCGCCGAGCGTTGGTTTTTCTTGAAGCGGTCCTTGCGGCCGT
GACGTGCTCGCTTGCTACTGTACCCTGCAGTTTTGAAGCCGGCGAAGATG
ATACCGAAGGTTGCGTGACGTAAGATAGATATCACACCCCCTGGTCCGAT
TTTCTAAGCTCGATTACTCGGCAGGAAAAGAAGTGTTGGACAAAAAAAAT
GGCGGAAGGCGTTGGAACCGTCTCGTCGAGAGCTTTCCGACAAATCCTTT
GATTCCAGCATGCTCGTCGTCTTGGAGTACTGAATGAAGCTTTGAAGATG
GTTCCAGGGGGTGTTGCATCTTGTGCAACCGATGATAATCCTCTTGTAGT
AGCAGTGCTCTTGTGATGTCGAAGTCGAAGCACGTGCTGCTGCTTGTTTA
TCTGTCGCCACCCAAGAACTGCATGTTATTGGACTCACCACGCTGAAATG
ACCCCCCCCCCTCGCGCCGTATCCCTGTCCGCCGTACCCCCTGTCCCTCC
TTCGGCTACGTCTGTAGGGCAAGCCGCCGCCGCCGCCGCCGGCCTAGACG
CGCTGTATGCGGAGGACGTGGACATGGGCGAGGCCATGCCGTGGTCATTC
GCACCCGACTCCAGCGGGTTCGCAGGTACAGTGTACGTCCCGCTCGACGA
AAACGCCCCATTGCAGCTACATAGCTGTCCCTTGTTGAACGTACCCCTTG
AGCCTCTGGTGCATCGTTGTGAAACGTAGCCTGGGCTGGCGAAAACCATG
ACGGCATGTCACTCCATCCCGGCATTGTACTGTAGGGATGCGAGGTCTAA
AGACTACGGCATGCGTTTACATGAGTACACCCCCCGTCGAGTCCAAGATA
CAAGACGATCATATCTGTACGTACTAGCGTCTTGTCAAGTGTACGGGCAG
CCTCGGATTTCTTGCGGTATACACGTGTACTTGGTTTCTTCTGCAAAAGA
AGCAAAAAAAAAAACACGTGTTGGCCACCGCCTTAAACTGCAACGTTTCT
GTTTGGCGCAGATGCTGCTTTAATAGTAGCTGCTGCCGTTGATGGCTCGC
CCCTCCGAAAGCGACGAACACGCCCCCTCGCCGCCTCGTCGTCGCCGTTA
CTGCTGTACTCTTCTTTCGTAGTGTGATGACAAGTCTCTCGTCGTCGTTT
TGTCCCACCCCGTACAGTAGGCGCAGCGTCCAACGCGCCCTCCGCACAAG
ATCTCTCCGCGCCGGCGGCAGCGGCAGTGGCAGCGGCGGGGGCGACGCCG
GCAACGGCGGAGTCCAACGGCGCCGCCTCTTCGAACACCGGCGCTTCTGC
CTCGAGCCAATCTTCGGCAACGGCGCCAGCCTGGGGCATGGATTCTCCGT
CCCCCTTTTCCCCGGAAAAGTGGACGGCGTAGTTGGCGGCGGAGGAAGGA
GACCTTATTTTTGCTTGTTTGCGTCGAAAGAGGTTGTTTGGGCGGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig71:718205..720051-

>mRNA_E-siliculosus-1a_M_contig71.15319.1 ID=mRNA_E-siliculosus-1a_M_contig71.15319.1|Name=mRNA_E-siliculosus-1a_M_contig71.15319.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=768bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig71:718205..720051- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGGCTTGTTTCGGGCGGCGCGAGCATGGGCGGCGACAACGGCGGGGA
TGCCTCGATGGATGGGGCTTGTTTCGGGCGGCGCGAGCATGGGCGGCGAC
AACGGCGGGGATGCCTCGATGGGGCAAGCCGCCGCCGCCGCCGCCGGCCT
AGACGCGCTGTATGCGGAGGACGTGGACATGGGCGAGGCCATGCCGTGGT
CATTCGCACCCGACTCCAGCGGGTTCGCAGGGCAAGCCGCCGCCGCCGCC
GCCGGCCTAGACGCGCTGTATGCGGAGGACGTGGACATGGGCGAGGCCAT
GCCGTGGTCATTCGCACCCGACTCCAGCGGGTTCGCAGTAGGCGCAGCGT
CCAACGCGCCCTCCGCACAAGATCTCTCCGCGCCGGCGGCAGCGGCAGTG
GCAGCGGCGGGGGCGACGCCGGCAACGGCGGAGTCCAACGGCGCCGCCTC
TTCGAACACCGGCGCTTCTGCCTCGAGCCAATCTTCGGCAACGGCGCCAG
CCTGGGGCATGGATTCTCCGTCCCCCTTTTCCCCGGAAAAGTGGACGGCG
TAGTAGGCGCAGCGTCCAACGCGCCCTCCGCACAAGATCTCTCCGCGCCG
GCGGCAGCGGCAGTGGCAGCGGCGGGGGCGACGCCGGCAACGGCGGAGTC
CAACGGCGCCGCCTCTTCGAACACCGGCGCTTCTGCCTCGAGCCAATCTT
CGGCAACGGCGCCAGCCTGGGGCATGGATTCTCCGTCCCCCTTTTCCCCG
GAAAAGTGGACGGCGTAG
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