mRNA_E-siliculosus-1a_M_contig7.15184.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig7.15184.1
Unique NamemRNA_E-siliculosus-1a_M_contig7.15184.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15184.1 vs. uniprot
Match: D8LSN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN7_ECTSI)

HSP 1 Score: 343 bits (881), Expect = 1.060e-118
Identity = 177/195 (90.77%), Postives = 186/195 (95.38%), Query Frame = 2 
Query:   17 MACNFSLATAMGGGRSLPELYVLQTSYSVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFKVFQALSMGLLVGISVIGSFSFGGAEWPFQAVDTIAVVGTASTVGLTGVVAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQIAGYFVLAGANASSAIAFTYTATGRATTIIPFSIYVRVSHT 601
            MACNFSLATAMGG RSLPELYVLQT+Y+VFLPVLMFGIPI+VDFWVQSLPMHLLP+HSFLAKAKVLADKF VFQALSMGLLV ISV+GSFSF GA+WPFQAVDTI V+G  +TVGLTGV+AHQIIGCIDDARAKSSSQSAKVFY KTKAGILKQIAGYFVLAGANASSAIAFTYTATGRAT IIPFSIYVRVSHT
Sbjct:    1 MACNFSLATAMGGSRSLPELYVLQTNYAVFLPVLMFGIPIIVDFWVQSLPMHLLPNHSFLAKAKVLADKFNVFQALSMGLLVSISVVGSFSFSGAKWPFQAVDTIIVLGAVTTVGLTGVLAHQIIGCIDDARAKSSSQSAKVFYDKTKAGILKQIAGYFVLAGANASSAIAFTYTATGRATAIIPFSIYVRVSHT 195
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15184.1 vs. uniprot
Match: A0A6H5JMA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA3_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 1.530e-113
Identity = 182/221 (82.35%), Postives = 188/221 (85.07%), Query Frame = 2 
Query:    2 FFATGMACNFSLATAMGGGRSLPELYVLQTSYSVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFKVFQALSMGLLVGISVIGSFSFGGAEWPFQAVDTIAVVGTAST----------------------VGLTGVVAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQIAGYFVLAGANASSAIAFTYTATGRATTIIPFSIYVRVSH 598
            FFA GMACNFSLATAMGG  SLPELYVLQT+Y+VFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLAD+FKVFQALSMGLLVGISVIGSFSF GA+WPFQAVDTI V+G  +T                      VGLT VVAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQI GYFVLAGANASSAIAFTYTATGRAT IIPFS YVRVSH
Sbjct:  130 FFAAGMACNFSLATAMGGSLSLPELYVLQTNYAVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADEFKVFQALSMGLLVGISVIGSFSFSGAQWPFQAVDTIIVLGAVTTRVSFAVRARFVCLLGGNFWNPKVGLTSVVAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQITGYFVLAGANASSAIAFTYTATGRATPIIPFSTYVRVSH 350
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15184.1 vs. uniprot
Match: D8LSN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN6_ECTSI)

HSP 1 Score: 322 bits (824), Expect = 7.270e-110
Identity = 170/189 (89.95%), Postives = 174/189 (92.06%), Query Frame = 2 
Query:   35 LATAMGGGRSLPELYVLQTSYSVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFKVFQALSMGLLVGISVIGSFSFGGAEWPFQAVDTIAVVGTASTVGLTGVVAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQIAGYFVLAGANASSAIAFTYTATGRATTIIPFSIYVRVSHT 601
            L  + G  RSLPELYVLQTSYSVFLPVLMFGIPIVVDFW QSLPMHLLPDHSFLAKAKVLA KFK  QALSMGLLVGIS+IGSFSFGGAEWPF AVDTIAVVG ASTVGLT +VAHQI+GCIDDARAKSSSQSAKVFY KTKAGILKQIAGYFVLAGANASSAI FTYTATGRAT IIPFSIYVRVSHT
Sbjct:   17 LGDSDGRNRSLPELYVLQTSYSVFLPVLMFGIPIVVDFWAQSLPMHLLPDHSFLAKAKVLAGKFKAVQALSMGLLVGISLIGSFSFGGAEWPFHAVDTIAVVGAASTVGLTDLVAHQIVGCIDDARAKSSSQSAKVFYDKTKAGILKQIAGYFVLAGANASSAITFTYTATGRATAIIPFSIYVRVSHT 205
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15184.1 vs. uniprot
Match: A0A6H5JML4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML4_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 2.190e-88
Identity = 148/186 (79.57%), Postives = 153/186 (82.26%), Query Frame = 2 
Query:  107 LPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFKVFQALSMGLLVGISVIGSFSFGGAEWPFQAVDTIAVVGTAST----------------------VGLTGVVAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQIAGYFVLAGANASSAIAFTYTATGRATTIIPFSIYVRVSH 598
            LPVLMFGIPIVVDFWVQSLPMHLLPDHS LAKAKVLAD+F VFQALSMGLLVGI++IGSFSF GA WPFQAVDTI V+G  +T                      VGLT VVAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQI GYFVLAGANASSAIAFTYTATGRAT IIPFSI VRVSH
Sbjct:    3 LPVLMFGIPIVVDFWVQSLPMHLLPDHSLLAKAKVLADEFNVFQALSMGLLVGIALIGSFSFSGARWPFQAVDTIIVLGAVTTRVSFAVRARFVCLLGGNFWNPKVGLTSVVAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQITGYFVLAGANASSAIAFTYTATGRATPIIPFSIDVRVSH 188
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig7.15184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSN7_ECTSI1.060e-11890.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMA3_9PHAE1.530e-11382.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSN6_ECTSI7.270e-11089.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JML4_9PHAE2.190e-8879.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig7contigE-siliculosus-1a_M_contig7:2008814..2011008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size585
Model size601
Exons4
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig7.15184.1prot_E-siliculosus-1a_M_contig7.15184.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig7 2008814..2010992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935940.579402-CDS-E-siliculosus-1a_M_contig7:2008813..20089961622935940.579402-CDS-E-siliculosus-1a_M_contig7:2008813..2008996Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 2008814..2008996 -
1696250856.3147109-CDS-E-siliculosus-1a_M_contig7:2008813..20089961696250856.3147109-CDS-E-siliculosus-1a_M_contig7:2008813..2008996Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 2008814..2008996 -
1622935940.6003501-CDS-E-siliculosus-1a_M_contig7:2009715..20097781622935940.6003501-CDS-E-siliculosus-1a_M_contig7:2009715..2009778Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 2009716..2009778 -
1696250856.324886-CDS-E-siliculosus-1a_M_contig7:2009715..20097781696250856.324886-CDS-E-siliculosus-1a_M_contig7:2009715..2009778Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 2009716..2009778 -
1622935940.6207592-CDS-E-siliculosus-1a_M_contig7:2010131..20103141622935940.6207592-CDS-E-siliculosus-1a_M_contig7:2010131..2010314Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 2010132..2010314 -
1696250856.3351555-CDS-E-siliculosus-1a_M_contig7:2010131..20103141696250856.3351555-CDS-E-siliculosus-1a_M_contig7:2010131..2010314Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 2010132..2010314 -
1622935940.6392627-CDS-E-siliculosus-1a_M_contig7:2010836..20109921622935940.6392627-CDS-E-siliculosus-1a_M_contig7:2010836..2010992Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 2010837..2010992 -
1696250856.354304-CDS-E-siliculosus-1a_M_contig7:2010836..20109921696250856.354304-CDS-E-siliculosus-1a_M_contig7:2010836..2010992Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 2010837..2010992 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935940.6558862-UTR-E-siliculosus-1a_M_contig7:2010992..20110081622935940.6558862-UTR-E-siliculosus-1a_M_contig7:2010992..2011008Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 2010993..2011008 -
1696250856.3637881-UTR-E-siliculosus-1a_M_contig7:2010992..20110081696250856.3637881-UTR-E-siliculosus-1a_M_contig7:2010992..2011008Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 2010993..2011008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig7.15184.1

>prot_E-siliculosus-1a_M_contig7.15184.1 ID=prot_E-siliculosus-1a_M_contig7.15184.1|Name=mRNA_E-siliculosus-1a_M_contig7.15184.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=195bp
MACNFSLATAMGGGRSLPELYVLQTSYSVFLPVLMFGIPIVVDFWVQSLP
MHLLPDHSFLAKAKVLADKFKVFQALSMGLLVGISVIGSFSFGGAEWPFQ
AVDTIAVVGTASTVGLTGVVAHQIIGCIDDARAKSSSQSAKVFYAKTKAG
ILKQIAGYFVLAGANASSAIAFTYTATGRATTIIPFSIYVRVSHT
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mRNA from alignment at E-siliculosus-1a_M_contig7:2008814..2011008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig7.15184.1 ID=mRNA_E-siliculosus-1a_M_contig7.15184.1|Name=mRNA_E-siliculosus-1a_M_contig7.15184.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2195bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:2008814..2011008- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTTCTTTGCCACAGGAATGGCTTGCAACTTCTCCTTGGCGACAGCGATGG
GCGGTGGCCGTTCACTCCCGGAGCTATACGTTCTGCAAACAAGCTACTCG
GTGTTTCTCCCGGTTCTGATGTTCGGGATCCCGATTGTCGTGGACTTCTG
GGTGCAGAGCTTACCGATGCATGTGAGCGAGCAAGCCACATGGAAAACAA
ATTGACTTTCTTTGCCTTGGGTGCATTCTGTTCGACGTCGCCTTACTTCG
ATTTGGTGCACCGTTCACGACCACATGCGGCGGCTGCGGAAACCTTGTTT
ATCACGTTGCTTGGATAAGTCGTGCATCAATCAGTATAAACGTCTTTCTC
AAACAGGAGCGCGCCGCACGCGGTTGCTCGACCTTCTCAAGCAGGCTTCT
GTCGGAATCACCTTTGGTGAACCGAGACCTCATAAGCAAAGTGTAGCCAC
AATGCACCACACTGCTCCCCTTTGCCCGCCTCGGTCTTGACCGTCGCGCG
AGTTGCATCCGCTCGGCGTAGGAGTGGCGCTCCCTTTTCGAAAACATCCC
TCCTGGATGAATATCTCTGCCATTGGTCTCTCGGGAACGAAAATAAGTAG
TCAACCTCCGTCGAGAACGACTAAATGCCCGCCACAAAGAGACGAACTGC
CGTTTAGCCCCACTCCATCACCCCCCCGCCCCGCGATTCTGCAGCTGCTT
CCCGATCACAGCTTTCTGGCGAAGGCAAAGGTCCTGGCAGACAAGTTCAA
AGTCTTCCAAGCGCTCAGCATGGGGCTCCTGGTCGGCATCTCCGTGATTG
GCTCGTTCTCTTTCGGTGGCGCGGAGTGGCCGTTTCAAGCCGTTGACACC
ATCGCTGTCGTGGGGACGGCTTCAACGGTGAGTGGCGTAGGCAACCTTCC
GCGAGCAGAGCCGACAAAAATTGCTTCCGTTCACCGCTCCACCAACGGGT
TGTCGTCGTCGTCGTCTTCGTCGGTAGGACTAGGGGGCTAGATCACGACG
AGAGCGAGTGCGTGTAGGCGTGTGATACGGAAGGATGGCCGGGGTTCGGT
CTCGAGGCGAGAAAGCCTCCGGTGTATCACAGCTCTCCCTTCGCAGAGCG
GCTGCATTGGAGCGAAACGAAGATACTGCACAGAAAATATGCGGGATGAT
GCATGAACAAGGAGCGCGTGTCGTTCGCTGTACGTGCCCGCTTCGTTTGT
TTGCTCGGTGGGATCTTCTGGAATCCAAAGGTTGGGCTGACGGGCGTCGT
GGCACACCAAATTATTGGCTGCATCGACGACGCCCGGGCGAAGGTGAGCC
GTGCCCAGGTCCTTGCGCGGGGGTGTTGTGGAAATAGTGGGTAGAGCGCA
CCGACAACAAGTATCACCACGATTGTGTCTACGCGATGCTCGTGTTCTTG
CGTGATCCGTGGCCAACCAACGGCTACCGCAGAGGGCTTTGGGCTAGACG
TGGTTGTCGCGCTTCACGGTTTGTCCTCATTCTTATCCCATCCTCTTCTT
CTTCTTTAACAGTGATTTTCGAATTGCAGAAGCACGAAGCTCGAAGAACA
GAGGTGCTCTGATTGATGCCGGGCCAAACTGCCAATGGATAGGGAAATAC
GAAGTTGTTTGAGTGGATGAGAGAGCGAGTGAAGGAGGGGGAGAAAGAGA
GAGTGAGAATAAACAATTACAATTTGAGGCAGAGGATGTACCGGTAATCC
GGCCGATGGACGAACTACACATGTAGTGTGACCACCGCCGGCTGCAAGGC
ATAGATTTTGTTCATTATCTGGTCTGACCATGCTCTGTAGCCGCGGCCAC
AGCTCACGCGACCCTCATTTGCTGTGCGCTCTTCCTCAAGGAAGCTGGAT
CACTGCGGTATGGTACCGCATACCGAGGGAGCGCTGCCATAACGCTGTCG
TTTTGAGGTCGGTTCTTTGTGCGTTCTGCGTGCACTCATCACGCTACGCA
TATCGCGCCCCCCGACGTTGGTATTCGTATCCTCATCTGCCCCCTTCGTG
CAAACAATGCAGTCATCGTCTCAGTCGGCAAAGGTTTTCTACGCCAAGAC
GAAGGCCGGGATCCTTAAGCAGATTGCGGGCTACTTCGTACTTGCGGGGG
CGAACGCTTCCTCGGCAATCGCTTTCACCTACACGGCGACCGGGCGGGCA
ACTACGATCATCCCCTTCAGCATTTATGTACGCGTGAGCCACACA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig7:2008814..2011008-

>mRNA_E-siliculosus-1a_M_contig7.15184.1 ID=mRNA_E-siliculosus-1a_M_contig7.15184.1|Name=mRNA_E-siliculosus-1a_M_contig7.15184.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1170bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:2008814..2011008- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCTTGCAACTTCTCCTTGGCGACAGCGATGGGCGGTGGCCGTTCACT
CCCGGAGCTATACGTTCTGCAAACAAGCTACTCGGTGTTTCTCCCGGTTC
TGATGTTCGGGATCCCGATTGTCGTGGACTTCTGGGTGCAGAGCTTACCG
ATGCATATGGCTTGCAACTTCTCCTTGGCGACAGCGATGGGCGGTGGCCG
TTCACTCCCGGAGCTATACGTTCTGCAAACAAGCTACTCGGTGTTTCTCC
CGGTTCTGATGTTCGGGATCCCGATTGTCGTGGACTTCTGGGTGCAGAGC
TTACCGATGCATCTGCTTCCCGATCACAGCTTTCTGGCGAAGGCAAAGGT
CCTGGCAGACAAGTTCAAAGTCTTCCAAGCGCTCAGCATGGGGCTCCTGG
TCGGCATCTCCGTGATTGGCTCGTTCTCTTTCGGTGGCGCGGAGTGGCCG
TTTCAAGCCGTTGACACCATCGCTGTCGTGGGGACGGCTTCAACGCTGCT
TCCCGATCACAGCTTTCTGGCGAAGGCAAAGGTCCTGGCAGACAAGTTCA
AAGTCTTCCAAGCGCTCAGCATGGGGCTCCTGGTCGGCATCTCCGTGATT
GGCTCGTTCTCTTTCGGTGGCGCGGAGTGGCCGTTTCAAGCCGTTGACAC
CATCGCTGTCGTGGGGACGGCTTCAACGGTTGGGCTGACGGGCGTCGTGG
CACACCAAATTATTGGCTGCATCGACGACGCCCGGGCGAAGGTTGGGCTG
ACGGGCGTCGTGGCACACCAAATTATTGGCTGCATCGACGACGCCCGGGC
GAAGTCATCGTCTCAGTCGGCAAAGGTTTTCTACGCCAAGACGAAGGCCG
GGATCCTTAAGCAGATTGCGGGCTACTTCGTACTTGCGGGGGCGAACGCT
TCCTCGGCAATCGCTTTCACCTACACGGCGACCGGGCGGGCAACTACGAT
CATCCCCTTCAGCATTTATGTACGCGTGAGCCACACATCATCGTCTCAGT
CGGCAAAGGTTTTCTACGCCAAGACGAAGGCCGGGATCCTTAAGCAGATT
GCGGGCTACTTCGTACTTGCGGGGGCGAACGCTTCCTCGGCAATCGCTTT
CACCTACACGGCGACCGGGCGGGCAACTACGATCATCCCCTTCAGCATTT
ATGTACGCGTGAGCCACACA
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