mRNA_E-siliculosus-1a_M_contig7.15152.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig7.15152.1
Unique NamemRNA_E-siliculosus-1a_M_contig7.15152.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig7.15152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig7contigE-siliculosus-1a_M_contig7:1713031..1714719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size252
Model size445
Exons2
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-15_003400.1
Ec32 ortholog descriptionhypothetical protein
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig7.15152.1prot_E-siliculosus-1a_M_contig7.15152.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig7 1713072..1714567 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935899.5360918-UTR-E-siliculosus-1a_M_contig7:1713030..17130711622935899.5360918-UTR-E-siliculosus-1a_M_contig7:1713030..1713071Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 1713031..1713071 -
1696250839.3654556-UTR-E-siliculosus-1a_M_contig7:1713030..17130711696250839.3654556-UTR-E-siliculosus-1a_M_contig7:1713030..1713071Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 1713031..1713071 -
1622935899.5882952-UTR-E-siliculosus-1a_M_contig7:1714567..17147191622935899.5882952-UTR-E-siliculosus-1a_M_contig7:1714567..1714719Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 1714568..1714719 -
1696250839.3978179-UTR-E-siliculosus-1a_M_contig7:1714567..17147191696250839.3978179-UTR-E-siliculosus-1a_M_contig7:1714567..1714719Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 1714568..1714719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935899.5504196-CDS-E-siliculosus-1a_M_contig7:1713071..17130961622935899.5504196-CDS-E-siliculosus-1a_M_contig7:1713071..1713096Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1713072..1713096 -
1696250839.3767521-CDS-E-siliculosus-1a_M_contig7:1713071..17130961696250839.3767521-CDS-E-siliculosus-1a_M_contig7:1713071..1713096Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1713072..1713096 -
1622935899.5702963-CDS-E-siliculosus-1a_M_contig7:1714340..17145671622935899.5702963-CDS-E-siliculosus-1a_M_contig7:1714340..1714567Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1714341..1714567 -
1696250839.3867633-CDS-E-siliculosus-1a_M_contig7:1714340..17145671696250839.3867633-CDS-E-siliculosus-1a_M_contig7:1714340..1714567Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1714341..1714567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig7.15152.1

>prot_E-siliculosus-1a_M_contig7.15152.1 ID=prot_E-siliculosus-1a_M_contig7.15152.1|Name=mRNA_E-siliculosus-1a_M_contig7.15152.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=84bp
MGSFASKTTGGATAVAARCSLRQHLCHSDQHVRQALQQMAVPNRAMKAVV
SLPQAFRFGRNHMEQESECSASSAIRRFENEDL*
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mRNA from alignment at E-siliculosus-1a_M_contig7:1713031..1714719-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig7.15152.1 ID=mRNA_E-siliculosus-1a_M_contig7.15152.1|Name=mRNA_E-siliculosus-1a_M_contig7.15152.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1689bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:1713031..1714719- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGTACACACACACAGGCGCAGCTTTAGGGACGACTCCTCTGGGGGCCTTG
GAGGCAGGCTTTTAGAGCTGAGGACCACAACAAGCTGACTCCTGGTGCCA
GGACGGGGCCACCGGTTGAACATCGTCAACCGAGTTCCCTGTGCAGCAAC
CCATGGGAAGCTTTGCTAGCAAGACCACAGGGGGTGCAACGGCAGTAGCA
GCTAGATGCAGCCTCCGCCAGCATTTGTGTCATTCGGACCAGCATGTTCG
CCAGGCTCTCCAGCAAATGGCAGTGCCAAATAGGGCGATGAAGGCGGTGG
TGTCCCTCCCGCAGGCGTTTCGTTTCGGACGAAATCACATGGAGCAAGAG
TCTGAGTGCAGCGCGTCTTCCGCGATCAGGTGAGGGAAGAGGCGGGCAGG
CCCTTTGACTGCGCTGGGCATGGAAAAAATCATGGCAGCTGTGATAGCAC
TCTTCTGTAAGTTGCTTTGGAGAGACACAGTTGTTGTGTTTATCGAAAGT
CCGAGAAAAAAAAACGGCACGGCTAAACACCCCACCGGTGGGGTGTTTAA
CAAATTACCCACCGGTGGGGTGTGTAGCCGTGTAGAAAAAATGGACTCCA
ACACGTCTGTCGCCTCGCGCCATCATCACCATGGTGTCGGCCAGGGACGT
GTCCGCCAGGACATTCAAACCACGCGACATCCTCGCAAATACTGCCTCAA
CCAGTCGCCCGATGTCTGCGCTGACCTGCGCTGACTTCCTGTAGATAGGT
TGGCAGCTGCATCGTGACCCAGAGGTGACGGTACTGTTCGGTATGACGGT
ATGTACACGATTTTTTTTTCAACGAGGTTTGCGTGTGCGGCGAAAAGACA
GAGAGCACCAGGTAGGTGCCGTAGTTCGAACCAAGCTCAAACCCAGAAAA
AAAGCGTGCGGGTGTGGGGCTGTTGGTTGTGCCATCTGGTTCCTTTATAA
GATGCCTCGAGCACATGCACCAGCGAACACCAGACAGAGTCTCACTCGAA
CAGCAGCAGCGACCAACCGTCCCGCTATAAAACAACAACTGCCGCAGTGA
AGAATTCCGTGCTGCTTTCAAAGGAACTACTCCCACGTGTGTAATGTCAG
CCTCGTTTAAAGAACGGTCAACCTCCTCACGTGCAAAGCTTGCTTTCGTG
GAGCACCAGTTTTTTGCATGTACCGTAATGATAAGGGGCCAACCGTCATA
TGTACGCGGCAGTCCTACAATAGGAATACTACAAACAAGGATCCCAAGAC
GTCCGCGTTTTATCTTGACGTTCTGGTGTTTGTGTACGTAGTCTAGATCA
TGGCCTGTTTTCGTTCTTTTGGGATTCTTGCCTCACTCCCTTCGATGCTT
TGTACGCTCATAGATACCATGCTATATTCGGCGCGTTGTCGTTTTGCCCT
TTTCAAGACGGTATATAGTTGACGGATGTTGTGTTCTTCGGACGGCGCGT
GCGGCTGCTGCTTAACTGCTGTGTCACTTTCACAACAAAATCGTGTTTCT
GCCAACATTTGTAACACCTTGGTGAGTATTGTTGAATAGCAGGATGCAGC
TATGTTTGAACATCACTGCTAACACCCATCTCACCGATGCCGCACCAAAT
TGGAAATCGCTGCTTGCGCATAGGAGGTTTGAGAACGAGGACTTGTGACA
ACTGCTCGTGCTCCGTCTGTCGAGATAGCAACGGATGCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig7:1713031..1714719-

>mRNA_E-siliculosus-1a_M_contig7.15152.1 ID=mRNA_E-siliculosus-1a_M_contig7.15152.1|Name=mRNA_E-siliculosus-1a_M_contig7.15152.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=504bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:1713031..1714719- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGAAGCTTTGCTAGCAAGACCACAGGGGGTGCAACGGCAGTAGCAGC
TAGATGCAGCCTCCGCCAGCATTTGTGTCATTCGGACCAGCATGTTCGCC
AGGCTCTCCAGCAAATGGCAGTGCCAAATAGGGCGATGAAGGCGGTGGTG
TCCCTCCCGCAGGCGTTTCGTTTCGGACGAAATCACATGGAGCAAGAGTC
TGAGTGCAGCGCGTCTTCCGCGATCAGATGGGAAGCTTTGCTAGCAAGAC
CACAGGGGGTGCAACGGCAGTAGCAGCTAGATGCAGCCTCCGCCAGCATT
TGTGTCATTCGGACCAGCATGTTCGCCAGGCTCTCCAGCAAATGGCAGTG
CCAAATAGGGCGATGAAGGCGGTGGTGTCCCTCCCGCAGGCGTTTCGTTT
CGGACGAAATCACATGGAGCAAGAGTCTGAGTGCAGCGCGTCTTCCGCGA
TCAGGAGGTTTGAGAACGAGGACTTGTGAGAGGTTTGAGAACGAGGACTT
GTGA
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