prot_E-siliculosus-1a_M_contig7.15049.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig7.15049.1
Unique Nameprot_E-siliculosus-1a_M_contig7.15049.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length467
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig7.15049.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.330e-22
Identity = 56/74 (75.68%), Postives = 58/74 (78.38%), Query Frame = 0 
Query:   44 MAATDHDTLVTIFHSTGGTSWVRNDNWNTTAELSTWYGNKVDGQGRVVRLGLGGNNLRGSIPKELGALANLEEL 117
            MAATD + LV IF  T GT W RNDNWNTTAELSTWYG KVDGQGRVV L L  NNLRGSIPKELG L NL+ L
Sbjct:    1 MAATDREVLVAIFLLTDGTGWERNDNWNTTAELSTWYGIKVDGQGRVVELSLPKNNLRGSIPKELGTLTNLKSL 74
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig7.15049.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 7.910e-21
Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = 0 
Query:   44 MAATDHDTLVTIFHSTGGTSWVRNDNWNTTAELSTWYGNKVDGQGRVVRLGLGGNNLRGSIPKELGALANLEELSL 119
            MA+ D D LV +F STGG  W R DNWNT A+ +TW+G KV+ QGRVV + LG NNL+G IPKELGALA L  L L
Sbjct:    1 MASKDRDALVALFCSTGGAGWTRRDNWNTDADRATWFGVKVNDQGRVVDVDLGSNNLQGPIPKELGALAKLASLCL 76
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15049.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 3.840e-17
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 0 
Query:   39 PFRFAMAATDHDTLVTIFHSTGGTSWVRNDNWNTTAELSTWYGNKVDGQGRVVRLGLGGNNLRGSIPKELGALANLE 115
            PF + MA TD   LV ++++TGG  W  N NW T+A LS W+G +V+ QGRVV+L LG NNLRG IPKELGAL+ LE
Sbjct:   67 PF-YTMAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLRGPIPKELGALSRLE 142
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig7.15049.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.070e-15
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 0 
Query:   44 MAATDHDTLVTIFHSTGGTSWVRNDNWNTTAELSTWYGNKVDGQGRVVRLGLGGNNLRGSIPKELGALANLEELSL 119
            MA TD D LV +F STGG SW + DNW+T AE++TW G +V+ +GRVV+L L  NNLRG IP +LG L+ LE L L
Sbjct:    1 MALTDRDALVALFRSTGGASWDKKDNWDTAAEIATWSGVQVNDEGRVVKLRLKSNNLRGPIPPQLGNLSFLESLDL 76
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig7.15049.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 4.150e-14
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 0 
Query:   44 MAATDHDTLVTIFHSTGGTSWVRNDNWNTTAELSTWYGNKVDGQGRVVRLGLGGNNLRGSIPKELGALANLEELSL 119
            MA+TD + L+ +F  T G  W R  NW T AEL+TW G +V+GQGRVV+LGL  NNL+G IP  LG LA L++L L
Sbjct:    1 MASTDREALIALFRLTCGYGWSRRGNWGTDAELATWDGVQVNGQGRVVKLGLAANNLQGPIPPALGKLAALQDLYL 76
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig7.15049.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.530e-14
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 0 
Query:   46 ATDHDTLVTIFHSTGGTSWVRNDNWNTTAELSTWYGNKVDGQGRVVRLGLGGNNLRGSIPKELGALANLEELSL 119
            +TD   LV +F++TGG +W +N  WNT A L  WYG +V+  GRVV+L L  NNL+G IP++LG L  L  L+L
Sbjct:   10 STDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKGHIPRQLGDLGALMTLNL 83
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig7.15049.1 vs. uniprot
Match: A0A6H5KBQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBQ3_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.880e-14
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 0 
Query:   44 MAATDHDTLVTIFHSTGGTSWVRNDNWNTTAELSTWYGNKVDGQGRVVRLGLGGNNLRGSIPKELGALANLEELSLT 120
            M++ D   L+ +FHST G +W R  NWNT A L+TW G +++  GRVV L L  NNL GSI + LGAL+ L+ LS++
Sbjct:   19 MSSMDRAALIALFHSTDGANWKRKRNWNTDAGLATWEGVRLNHAGRVVELALPNNNLHGSISEALGALSELQVLSIS 95
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig7.15049.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 5.340e-14
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 0 
Query:   44 MAATDHDTLVTIFHSTGGTSWVRNDNWNTTAELSTWYGNKVDGQGRVVRLGLGGNNLRGSIPKELGALANL 114
            MA+ D D LV +FH+TGG +W R  NW T+A+L TW G KV+ +GRVV L L  NNLRG+IP ELG L  L
Sbjct:  187 MASPDRDALVALFHATGGDNWTRKSNWCTSAKLGTWKGVKVNEEGRVVELDLSDNNLRGTIPVELGKLGAL 257
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig7.15049.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.240e-13
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 0 
Query:   44 MAATDHDTLVTIFHSTGGTSWVRNDNWNTTAELSTWYGNKVDGQGRVVRLGLGGNNLRGSIPKELGALANLEEL 117
            MA TD D LV ++++T G +W    NW+T A+LS W+G K D QGRVV+L L  N LRGSIP +LG L  L+E+
Sbjct:    1 MAPTDRDVLVALYNATDGPNWKNKTNWDTNADLSDWHGVKADDQGRVVKLSLSANKLRGSIPPQLGNLIELKEM 74
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig7.15049.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 5.060e-13
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 0 
Query:   44 MAATDHDTLVTIFHSTGGTSWVRNDNWNTTAELSTWYGNKVDGQGRVVRLGLGGNNLRGSIPKELGALANLEELSL 119
            MA+TD D LV +F S GG +W R +NW+T A+L +W+G  ++ QGRV  L L  NNL+G IP+++GAL  +E L+L
Sbjct:    1 MASTDRDALVALFRSAGGATWRRKENWDTAADLESWFGVILNNQGRVAELKLAVNNLQGVIPEKIGALNKIEILTL 76
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig7.15049.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL98_ECTSI1.330e-2275.68LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KQQ0_9PHAE7.910e-2161.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFK2_ECTSI3.840e-1758.44Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LCS7_ECTSI1.070e-1557.89LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LJS7_ECTSI4.150e-1455.26LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K3D6_9PHAE4.530e-1450.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KBQ3_9PHAE4.880e-1449.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPS8_ECTSI5.340e-1457.75Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LKS5_ECTSI1.240e-1352.70LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUC9_ECTSI5.060e-1350.00LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 183..204
e-value: 290.0
score: 3.6
coord: 207..239
e-value: 9.7
score: 15.1
coord: 279..311
e-value: 110.0
score: 7.0
coord: 111..130
e-value: 750.0
score: 0.3
coord: 135..167
e-value: 37.0
score: 10.9
NoneNo IPR availablePANTHERPTHR27008:SF246coord: 89..173
coord: 123..247
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 89..173
coord: 123..247
NoneNo IPR availablePANTHERPTHR27008:SF246coord: 242..345
coord: 171..269
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 242..345
coord: 171..269
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 431..436
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..406
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 407..430
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 437..458
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 459..467
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 89..347
NoneNo IPR availableTMHMMTMhelixcoord: 408..430
NoneNo IPR availableTMHMMTMhelixcoord: 437..459
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 111..134
e-value: 70.0
score: 6.3
coord: 183..206
e-value: 100.0
score: 5.0
coord: 255..279
e-value: 69.0
score: 6.4
coord: 327..351
e-value: 49.0
score: 7.6
coord: 207..231
e-value: 29.0
score: 9.5
coord: 135..159
e-value: 3.5
score: 16.6
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 161..220
e-value: 9.4E-7
score: 28.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 300..351
e-value: 7.4E-9
score: 35.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 201..299
e-value: 7.2E-31
score: 109.0
coord: 42..200
e-value: 9.7E-44
score: 151.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig7contigE-siliculosus-1a_M_contig7:547698..569325 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig7.15049.1mRNA_E-siliculosus-1a_M_contig7.15049.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig7 547698..569325 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig7.15049.1 ID=prot_E-siliculosus-1a_M_contig7.15049.1|Name=mRNA_E-siliculosus-1a_M_contig7.15049.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=467bp
QPTAVHDIQTIVLALLSSRVSRVPGHQARSGSFPPMRYPFRFAMAATDHD
TLVTIFHSTGGTSWVRNDNWNTTAELSTWYGNKVDGQGRVVRLGLGGNNL
RGSIPKELGALANLEELSLTYNQLGGSIPTELGALTNLRELFLGNNQLTG
SLPKELGTLTKISSLYLGRNNLTGSIPKELGALTNLVNLNLGHNQLTGSI
PTELGALTNLRELFLGKNQLTGSVPKELGTITKILNLNLGRNSLTGSIPK
ELGALTKLMYLCLDENQLTGSIPTELGALTKLEGLFLGKNQLTGPIPKEL
GALTEISSLSLELNNLTGSIPKELGALASLVSLSLGDNQLTGPLPPRSYG
RDMQDWVDIPDENEKARVRGAGATEAGDRQPWIVRVLGHITNFWHVAVPV
VDDVTDVLLLTSTAGASSPLWWICLIALVVADVERFWLLFALCVTVPLLP
LLWCWDWIASTHWRTAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt
IPR003591Leu-rich_rpt_typical-subtyp