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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1553.3205.1 vs. uniprot
Match: D8LLR3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLR3_ECTSI) HSP 1 Score: 317 bits (812), Expect = 5.820e-103 Identity = 166/172 (96.51%), Postives = 169/172 (98.26%), Query Frame = 3
Query: 123 MARFSAIAFLAIFTSAATAFVTPLAGVQMGRRSASANVATTRMSASPAPMTAPPTAEELKEMALSCQEDGCSVEAVSTLLNQLKAKKKELEMQLVTVDDVLTIMGDSSSLSEKGELEKLVEAVGRVFSTNDGTDYIPFPTGYSGEVNKKQKDAWDYNVNTPLKPVKPVYKKE 638
MARFSA AFLAIFTSAATAFVTPLAGVQMGRRSASANVATTRMSASPAPMTAPPTA+ELK+MALSCQEDGCSVE VSTLLNQLK KKKELEMQLVTVDDVLTIMGDSSSL+EKGELEKLVEAVGRVFSTNDGTDYIPFPTGYSGEVNKKQKDAWDYNVNTPLKPVKPVYKKE
Sbjct: 1 MARFSAFAFLAIFTSAATAFVTPLAGVQMGRRSASANVATTRMSASPAPMTAPPTAQELKDMALSCQEDGCSVETVSTLLNQLKTKKKELEMQLVTVDDVLTIMGDSSSLAEKGELEKLVEAVGRVFSTNDGTDYIPFPTGYSGEVNKKQKDAWDYNVNTPLKPVKPVYKKE 172
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 519 |
| Model size | 1736 |
| Exons | 4 |
| Ec32 ortholog | Ec-04_004800.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | chloroplast |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1553.3205.1 >prot_E-siliculosus-1a_F_contig1553.3205.1 ID=prot_E-siliculosus-1a_F_contig1553.3205.1|Name=mRNA_E-siliculosus-1a_F_contig1553.3205.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=173bp
MARFSAIAFLAIFTSAATAFVTPLAGVQMGRRSASANVATTRMSASPAPM
TAPPTAEELKEMALSCQEDGCSVEAVSTLLNQLKAKKKELEMQLVTVDDV
LTIMGDSSSLSEKGELEKLVEAVGRVFSTNDGTDYIPFPTGYSGEVNKKQ
KDAWDYNVNTPLKPVKPVYKKE* back to topmRNA from alignment at E-siliculosus-1a_F_contig1553:9933..15779+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1553.3205.1 ID=mRNA_E-siliculosus-1a_F_contig1553.3205.1|Name=mRNA_E-siliculosus-1a_F_contig1553.3205.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5847bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1553:9933..15779+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGCGCTCCGCAGCCTGCTTCGTGTTTCGCCTTCTCTGCTTCCGTGGACG
CCTACACATACAACGCCGCTTTACGAGCTTTCTCTTTTCCCCCGACGGAG
ATCTTCCACGGCACACAACACCATGGCTCGCTTCTCTGCTATCGCCTTCC
TGGCCATCTTCACATCCGCCGCGACGGCGTTCGTCACCCCTCTCGCCGGC
GTTCAAATGGGCAGGAGGTCGGCGTCCGCCAACGTGGCCACAACGCGCAT
GAGTGCATCGCCTGCACCGATGACCGCCCCACCCACGGTGAGACGCCATG
ATCAAGAGCTCGAGAGACCGATCAAGCGTAGATGCAACTATCTTGGCCAG
ACGTTGTAACCGTGGGCTTGGTTTCGGATCATTACGGTACAAGCGTAGAA
GTAAGAGCGCACACATGCTAGCTCTCCGCTTGAATTTGGGGGAACAGATG
GTACCACAGCAGCTGAGATGACCGCTCGCTGTCATGAAAGAATAGTGCGA
AGGCGTGTGGGTGAGCTGCCCACGCACGACATGAAGGTCCACCCTGAAGA
GAGTGCTTACTGCTGTTACTAGGGCTTGCCTAAGGATGGCGTCATGGCAC
GCGGGGGTTAGATGGACTTGTGCCACCAAAAGTACGCGTGTGACCGAACA
TGGGCAGCAGCGGGTGGTCCTTTTCGAGAATGTCGCCACAAGTTGAATCG
CAAGGACACCTTCAAGCCGTGCTCTGTTGTCCATCCCGTTTGTACCAATG
GATTCGCCATCCCTTTGCCCTGGTAGATTTGTGACTCGCGCACAGAGTAC
ACACTCAAGCACACGCACCCGTCCGGCGATGGTGTCATGAACGCAGACCT
GTGAGTAAGCTCAACATGCAACCTGTGTTTCAAACATCGAACATCATGAA
TCGTGTCTCGAGAAAAACGGACGGGCGGTGTCAGAAGATGGCCGATACAT
GATGGAATGCTTTGGTGTCGCAGCCGTAGTTATGTTTAGTCCTGAACAAT
TTTCACAATGATGGTATGTGCTCAGCGACAAAGCAGGCCGCAACAGGCAA
ACGTGTGGAGCTCGTGTCGTCTAAACAGATATACCTATGAGGTACTTATT
TTGACTGAACGGCTGTACCAAATCGGTTTTGTACCTTGGCCACCACCCAA
GCCTTTGCTGGTTGCACGATACCGGGCATTTTGCGTGGTTCGCCGACGAA
TGCCCACCCCACGACACCCCCCGCGAGGCAAAACAATGAGCGATGCATCC
CGCGTTATAGGCGGGACAAAATGTTTACTACTCGCGCGTTTAAGCGAGAA
CGTAACGGAGTAACGGAAGACCGGTTTTGTGCGATGTGCGGCGGAAATGC
CCAGATACACATCCAGCGAATGTTGTTGGTCGTTGTGCCCCTCTCTCGTT
GCTACTCAGCACCGACGTCGCTTCCGAGCTTCGGCGTTTCGATGGAAAAC
ATTCGCTCGGTATTCTTTCCCTCCGCTGGGACGTTTGGCCCCTCGATGTC
TATAGGTTTTCTTGCTGGAAGATCTCCTCTCCCTGCCTGACCCAGACCTC
CAGTTTCCCATCGATGTCTCACACAAAACTGTCTAGAGAAGCGTTCACGG
CAGACGGCACAACGGCGGTGTTAGGACAAATCGTCGGTGTCAAGACAAAT
CGTCCGTCGGTGCTGGTGTTGCGGCTTTCGTTGAAAAAAAGTTCGTCGGC
GCGGCTGTCCCATCCCATAACTTCATATTTTACCGACGATTGACGGTTGC
CCTCATGAAACGGCATCTTGTTCACTGCACACGGGAGTGAACGTGCAACA
ATGTTGAGTGATACCAGTGGTCTCGACATACCCCATATATGCGCAACTGC
GGTGTATACAAGAAGGCTGAGAACATTCCAAACGGCGCGGGCACACCGCG
TACTTCGCGCGAAGGACCCGAACCGAAGGTCTACGCCCGCATTCATGTCT
TGTGCCAATGGCACTATTTACTCGAATTGGGGGAGTTGATGAGCATGGTT
TCGCCGCTTTGCCGGCATGCTCCGTCTTTGTTTTTCCAACCCGAACATTC
ACGGCCTCTTTCGGCACCCCTAGCTTCACAGATGAAGTCTGTTTTGGGGC
GCCAAGGTCGTGAAGACGCCTCCAGTAGTCGTTTGTAGAAAGAATAAGAA
TCGAGCTTGACTCGCTTCGATTTTGGTCGCTCCTGAAACTGCTGTTTTGC
GTCTCCCTCAGGCGGAAGAGTTGAAGGAGATGGCGCTGTCCTGCCAGGAA
GACGGGTGCTCGGTGGAGGCCGTGTCCACCCTGTTGAACCAGCTCAAGGC
CAAGAAGAAGGAGCTCGAGGTGTGTACGCATTCGATCAGATCAGGTAACA
CGTTGCCGTGACCCCAGTGGGGAAAGGCCCTTGCTTGTATTTGCAGCGAT
TACTGCAACCGTTACGGTTGTCGGCCGATGCATGAGGAGACCGTGCGCGT
GCTGTGAACGAAGCGAGCCCGCTGCGGGCATTTGGCGTGTTCCTTGACCA
GCTGGAATCTATGAAGCGGGGCTCCAAGTCCGTCGCTTGCTTTGCCGGTG
AATTCCCTAAGACGAAAACACCCGACTGCAGTAGTGTCTTCCGGGGTGAC
GGGACGGTCGTCGCTTGGGGTGGAGACCGGCATGAAGGAGTCTGGCAGAT
CGCGCTCGTTATATCAAGTATCGAATGTCGTCATGGCTGATGCCGGTTTT
TTGTTGGGCAGGAAATTGACTTTATTGCAGCGGAATTTTGTCGCTCTCTT
TTGCCGCTTCTGCTGTTACTAAATGAATGCAAGGGTTAGTGCCGGAAGAT
CTTGTCTCGGTTACGGCTTTCCTCAAGCTGTGCGCAGGGATACGGCAGAA
CACCAGATTGAAACGGTATCGTTTTTAAGTTGTGGGTGTGTGCAAACCGT
CGTGTACTTCTGATACCATGTGCCCCCCCCGCCGCCGGTGTCTTCGTCAT
GGCATTAACGCCCTTCATCTGCGTGACACAAAGTGCTCGCTAACTTTTTC
TCGTGAGCACATGTTTGAGGCCATCAACTTTCGCTTGTTATTTGTTTCCT
CGTCCCCCTCCCATATTACCCACGCAAGAGCCAGACCAATGATTGAAAGA
TAAATGATTTCTCCCCTCCAATCGCCGTCGTCTCCGGACTGATTGCTGTC
GACGCGTTCGCTGTGGTAAACTAGCGCCTCCGACAGAGCCTCTACCGTCA
CCGCCTGCCCGCGTCTGTCCACGGCTCACCTTCTTTCTGCTGTCTTATCA
TTGCCGGCGCTATCGTATCCTCGGTATGTATACCATTGCCGATTCTTTCG
TCTCTCCCCCCCCCCCTCCCTGCGACACCTTGATCTATCCTTTTTCCAGA
TGCAACTCGTCACCGTGGACGACGTCCTGACGATCATGGGTGACTCGTCC
AGCTTGTCAGAGAAGGGCGAGCTCGAGAAGCTCGTCGAGGCCGTCGGCCG
CGTGTTCTCGACCAACGACGGCACGGACTACATCCCGTTCCCGACCGGCT
ACTCCGGGGAGGTCAACAAGGTACGTGCGGGTGGTGTGTGTTGTTAGGAA
AACGGACAAGAGCCAATATGCTGCCAGCTCCGTGCCTGCGCAGACAGTTG
TTTTGTTCTTGCGGGATTTTTTGGCTGACGAGGTTCCGGACATGGGCTTA
GTTGTGCATCGGCCGCGAGGCTTGTGTTCAGGTTGGAATTAAGGGGGTGC
TTTTTTCATGGCAACAAAATAGCCATATGCATATGGCGTTGGATTTCGGC
GTTGACTTGTTGACGGTTTACCGTACACGGTCTTGTCGAACAGCCCCATT
GATTCTTAGTTTCGTTGGTTGCTGTGGTACTTCAGGAAATGATCGAATGA
AGCATTGTTTCCAGGATTGGTCCCAGCAAACGCTACTCTCAGCAGTCGTT
GCTTGTGTTCCCTCGCTTGTACCATATGGTCGCGTTATGCTTCTATGGCA
TGGCGTCTCCTTGAAAGGCGATCGGGGCTCCAAAACATGATGCGTTTTGC
CGAGGTCGCCCCCCAATGTTGTTCGTTTTTTTTTCTGGGTGGTGATGCGT
TGTGTATATTTTCCTTGTTCGATCGGTGAGAGGCGACGGTGACCTCTGAA
ATCGTTTTCGATTCCGCGGCGGTTGTTGGGTCCTCTTTGTTTGCTTTTTC
AACTTGGAAAACGTTCCGTGTAGCGTGTGTATGTAAACGGGCGAGCCCCT
CCCTGCCGCGTGAACAACTGATCCGGGATGCTTTTGTCGGCTGCACCGTG
AAAGACACCATACGGACCCCAGGGGTGGGTTTGACGAGAATTACCGCACG
CACCCACCTCCCCTTTGATAAGAGAACAGTTGGTCGTGCGAGAGTACCTA
CCACGCGGCGGCCATGGAGGCTGACATTATGGTGACGATTTGAACTTTTT
GGTGTTCGTCCGGCATGTGACACATGACGATCGAAACGCACCCTGTACCA
CCACAGCTGACTTACGTATTCTCGCGGCGGGCGACATACGAGCGCACTCT
AGAAACGTTTTTCGTCTTGCCTACAATAAGCATGCCTCCTTTGTGCTGAC
TGGCACCCTCTTGCGTGATGTTTTTTGTCCCTTGTCTGCGTACTGCTGTC
TAGCCCTGATACCCTCCCCCCCCCCCTTCCCCCCTTCCCCCCGTGCCGGC
GCTACGCCGTAAACTGAACGTCAACAGAAGCAGAAGGATGCGTGGGACTA
CAACGTGAACACGCCGTTGAAGCCCGTCAAGCCCGTCTACAAGAAGGAGT
AAAAGGAGCACTATTTACCTGTTCTCCGTACTTTTTTGATGGGGCCGTGC
ACAAGATGATGTCGCGGCCTCGGAAACCCAAATGGTCTCCATCCATACTT
CTGTTTGAACCGGGAAACAGCAGTCGTTCGTTCTTGTTGGTTGTTGCGAG
TTGTCGCGCAGAATGTCGTGCGGGGTCTTGAAGCGTGATGGATGGGGGGT
AGGATAGATTACGTACAGGCAGGGTTTTCCCGGAGGGTCTCACATAATGA
GGCGGCAAAAACTAGAAAGGCCGTGGGTGGCTCAGCTGCTCTGCTGTAGC
ACCATTTTTTGATGTCGCTGGTAGCCGTGTCCGATTTTGAGGAAGAGAAA
GGCCCCTCTTATTAGAGGTTTTCTGGGCTTTGCTTGGCGAGCGGGTGCAC
ACACACCCGGTTCGGGTTTTGGTAGGTGTCTTCCCCGACTCTAGACTTTA
GACTGTAGAATGCCTTGGTTGGATTGGACGACGGCGACGCTCACTCTTAA
ATTCTTCTGCGTGTGCAAAGGGGTTGATTGGGGTTGATTGTCTCTAGGGC
GACGCGCACACGAGCATGCGAGTGTACCTACGAGTATTCGAGCGACGAGA
GAACGACTAGAAAAACTGCTTGCTTGCTCTGCGTTGTGTCACGCCGTGAA
GAAAAACTATACTGGGCTACTTCCGGTGTGCGTGATCTCTGTCACGCCAT
TGTCGGCGGTGACGACGCGCTTAATTATTTGGGCATCGCGTGCGCGTGTG
AAAGTTTATTTACCCTCCGAAATGTCGCCGGTAGTATTGTCACTACGTTC
GTTCATGAATGGTCCGCGCTTAATTGTTCGTGTTTTCCCGTCAAATTCGC
CGTTGTTTTTTTTTCTCCCTCGAGAAAGCTTCACAGCAAGTTGATGGTGT
CCTCGAGCCCTTTACTCTCGACTGAGATCGGTCATTCTGTGGCTATGCAT
ACGCGTACCTACATCTTCAGCTATTTTTGTGTCTTTTCGAAGATGATGAA
ACAAATTCGCCTCTTCCATATACGACGGACTCATGATGGCGTAATCTGGA
GGCGGGACATCGGGTCTAGATCGAAACATGCAACATGTATGCGCAGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1553:9933..15779+ >mRNA_E-siliculosus-1a_F_contig1553.3205.1 ID=mRNA_E-siliculosus-1a_F_contig1553.3205.1|Name=mRNA_E-siliculosus-1a_F_contig1553.3205.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1038bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1553:9933..15779+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTCGCTTCTCTGCTATCGCCTTCCTGGCCATCTTCACATCCGCCGC
GACGGCGTTCGTCACCCCTCTCGCCGGCGTTCAAATGGGCAGGAGGTCGG
CGTCCGCCAACGTGGCCACAACGCGCATGAGTGCATCGCCTGCACCGATG
ACCGCCCCACCCACGATGGCTCGCTTCTCTGCTATCGCCTTCCTGGCCAT
CTTCACATCCGCCGCGACGGCGTTCGTCACCCCTCTCGCCGGCGTTCAAA
TGGGCAGGAGGTCGGCGTCCGCCAACGTGGCCACAACGCGCATGAGTGCA
TCGCCTGCACCGATGACCGCCCCACCCACGGCGGAAGAGTTGAAGGAGAT
GGCGCTGTCCTGCCAGGAAGACGGGTGCTCGGTGGAGGCCGTGTCCACCC
TGTTGAACCAGCTCAAGGCCAAGAAGAAGGAGCTCGAGGCGGAAGAGTTG
AAGGAGATGGCGCTGTCCTGCCAGGAAGACGGGTGCTCGGTGGAGGCCGT
GTCCACCCTGTTGAACCAGCTCAAGGCCAAGAAGAAGGAGCTCGAGATGC
AACTCGTCACCGTGGACGACGTCCTGACGATCATGGGTGACTCGTCCAGC
TTGTCAGAGAAGGGCGAGCTCGAGAAGCTCGTCGAGGCCGTCGGCCGCGT
GTTCTCGACCAACGACGGCACGGACTACATCCCGTTCCCGACCGGCTACT
CCGGGGAGGTCAACAAGATGCAACTCGTCACCGTGGACGACGTCCTGACG
ATCATGGGTGACTCGTCCAGCTTGTCAGAGAAGGGCGAGCTCGAGAAGCT
CGTCGAGGCCGTCGGCCGCGTGTTCTCGACCAACGACGGCACGGACTACA
TCCCGTTCCCGACCGGCTACTCCGGGGAGGTCAACAAGAAGCAGAAGGAT
GCGTGGGACTACAACGTGAACACGCCGTTGAAGCCCGTCAAGCCCGTCTA
CAAGAAGGAGTAAAAGCAGAAGGATGCGTGGGACTACAACGTGAACACGC
CGTTGAAGCCCGTCAAGCCCGTCTACAAGAAGGAGTAA back to top
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