mRNA_E-siliculosus-1a_F_contig1540.3133.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1540.3133.1 vs. uniprot
Match: A0A6H5KX37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX37_9PHAE) HSP 1 Score: 687 bits (1773), Expect = 2.340e-243 Identity = 352/375 (93.87%), Postives = 357/375 (95.20%), Query Frame = 2
Query: 50 MKQTSFLCLSGLAGSLAFVPSTNVVPSSAWTSRSGGSTNPAADAGSRRGIPVCMAATQPKPGPEVMGLNLGKPAPVETPEDYVYEQFIPDTPMTRKFGHLRGAKIKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRQDTTALKEWAEGKTEEDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEELLEKWFAVVGTSAAGATKDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLEAKAQDAIKAAEXXXXXXXXXXXXEERIKNAKEGDVLPNDLPKEN 1174
MKQTSFLCLSGLAGSLAFVPSTNVVPSSAWTSRS G TN AADAGSRRG+PVCMAATQPKPGPEVMGLNLGKPAPVETPEDYVYEQFIPDTPMTRKFGHLRGAK+KTVSETVADFY YYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMR+DTTALKEWAEGKTEEDV+EMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEELLEKWFAVVGTSAAGA KDLNLY EQIGKIEQAELLFKEIEIREKKRLAERLEAKAQDAIKAAE EERIKNAKEGDVLPNDLPK+N
Sbjct: 1 MKQTSFLCLSGLAGSLAFVPSTNVVPSSAWTSRSSGWTNAAADAGSRRGVPVCMAATQPKPGPEVMGLNLGKPAPVETPEDYVYEQFIPDTPMTRKFGHLRGAKVKTVSETVADFYKYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEGKTEEDVMEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEELLEKWFAVVGTSAAGAAKDLNLYQEQIGKIEQAELLFKEIEIREKKRLAERLEAKAQDAIKAAERAEQDAKNDAEEEERIKNAKEGDVLPNDLPKDN 375
BLAST of mRNA_E-siliculosus-1a_F_contig1540.3133.1 vs. uniprot
Match: D8LAS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAS7_ECTSI) HSP 1 Score: 431 bits (1109), Expect = 3.330e-145 Identity = 218/222 (98.20%), Postives = 221/222 (99.55%), Query Frame = 2
Query: 50 MKQTSFLCLSGLAGSLAFVPSTNVVPSSAWTSRSGGSTNPAADAGSRRGIPVCMAATQPKPGPEVMGLNLGKPAPVETPEDYVYEQFIPDTPMTRKFGHLRGAKIKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRQDTTALKEWAEGKTEEDVVEMIKSDDR 715
MKQTSFLCLSGLAGSLAFVPSTNVVPSSAWTSRSGGSTN AADAGSRRGIP+CMAATQPKPGPEVMGLNLGKPAPVETPEDYVYEQFIPDTPMTRKFGHLRGAK+KTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMR+DTTALKEWAEGKTEEDVVEMIKSDDR
Sbjct: 1 MKQTSFLCLSGLAGSLAFVPSTNVVPSSAWTSRSGGSTNAAADAGSRRGIPMCMAATQPKPGPEVMGLNLGKPAPVETPEDYVYEQFIPDTPMTRKFGHLRGAKVKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEGKTEEDVVEMIKSDDR 222
BLAST of mRNA_E-siliculosus-1a_F_contig1540.3133.1 vs. uniprot
Match: H6WBA6_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA6_VAULI) HSP 1 Score: 183 bits (465), Expect = 1.430e-49 Identity = 103/261 (39.46%), Postives = 157/261 (60.15%), Query Frame = 2
Query: 311 IPDTPMTRKFGHLRGAKIKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRQDTTALKEWAEGKTEEDVVEMIKSDDR-------SNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEELLEKWFAVVGTSAAGATKDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLEAKAQDAIKAA 1072
+PDT M ++FGHL+G +KTVSET+ F I Y+K +L Q+RT++ + LQSTHL V + F YD +FG GFY+ F + M+AYP G+A+LI+ A+V ++ ++P+++++D + + E T D+ K +++ SNI D FY LY + WG+G+ M+ +G+ TEE +E ++G S A +DL Y + + K+ QAE LFKEIEIREKK++AERLE KA+ A++AA
Sbjct: 7 VPDTAMYKRFGHLKGKDVKTVSETIKSFCIQYQKPILPQYRTMINDVLQSTHLNVVNGCFIYDAMFGYGFYSLFYKLMKAYPGTGEADLIYAAMVTSLD--MEPEKLKEDHETISKLIENMTRADLENSFKGENQNLLSEISSNIKADEFY-----------------------LYTKTWGIGLIEAMDKVGIPLTEENIESLANMIGFSPIKARQDLVQYKDVLDKVAQAEQLFKEIEIREKKKMAERLEEKAKRALEAA 242
BLAST of mRNA_E-siliculosus-1a_F_contig1540.3133.1 vs. uniprot
Match: A0A835ZGT7_9STRA (Thylakoid formation protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGT7_9STRA) HSP 1 Score: 181 bits (458), Expect = 1.290e-48 Identity = 103/253 (40.71%), Postives = 156/253 (61.66%), Query Frame = 2
Query: 314 PDTPMTRKFGHLRGAKIKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRQDTTALKEWAEGKTEEDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEELLEKWFAVVGTSAAGATKDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLEAKAQDAIKAA 1072
PDTP+ ++FG L+G +K VSE++ F Y K +L Q+RT+V + +QSTHL+V DARFKYD +F G + F + MR+YP G+ ++IFD ++ I LDP Q+ D L WA+ +E D+ E +K + S + VA ++ +++LY++ WG+G+ +ME G+E +EE +E + A++G A A +DL Y E + K QAE LFKEIEIREKK++A+RLE KA+ A++ A
Sbjct: 4 PDTPLVKRFGSLKGRDVKPVSESMMSFCKCYPKPILPQYRTLVNDLIQSTHLSVVDARFKYDAVFATGLHGIFFKLMRSYPGEGEEKVIFDCLMNCID--LDPAQVTADAEGLISWAKSASEADLEEAMKGEGSSALAA----VANAA------------KEDEFYLYSKNWGLGLILIMEAAGVETSEEKMEHFVALLGFPAGKAKQDLLQYKEVLEKTAQAEQLFKEIEIREKKKMADRLEEKARRALEEA 238
BLAST of mRNA_E-siliculosus-1a_F_contig1540.3133.1 vs. uniprot
Match: A0A836CK23_9STRA (Thylakoid formation protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK23_9STRA) HSP 1 Score: 176 bits (445), Expect = 1.120e-46 Identity = 99/254 (38.98%), Postives = 155/254 (61.02%), Query Frame = 2
Query: 314 PDTPMTRKFGHLRGAKIKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRQDTTALKEWAEGKTEEDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEELLEKWFAVVGTSAAGATKDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLEAKAQDAIKAAE 1075
PDTP ++FG L G ++KTVS ++ F YK+ +L Q+RTIV + +QSTHLT+ DARFKYD +F +G + + R +++YP G+A+ IFDA+ + L+ + D +L WA+ +E D+V +K + S + + +AR +D +++LY+++WG+G+ +ME G+E T+E + + VG A +DL Y + + K QAE LFKEIEIREKK++AERLE KA+ A+ A+
Sbjct: 7 PDTPGAKRFGDLSGKEVKTVSASMTRFCEQYKRPILPQYRTIVNDLIQSTHLTLVDARFKYDAVFALGLHGIYFRLLKSYPGEGEAQTIFDALTNCLD--LESASIASDAESLSTWAKSASEADLVAALKGEGDSQLAS----IARAA------------KDDEFYLYSKMWGLGLIQMMEGAGIETTQEKVVELVEYVGFPVAKVKQDLVQYKDVLEKALQAEQLFKEIEIREKKKMAERLEEKAKRALAQAQ 242
BLAST of mRNA_E-siliculosus-1a_F_contig1540.3133.1 vs. uniprot
Match: A0A7S2W6W5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W6W5_9STRA) HSP 1 Score: 149 bits (375), Expect = 3.580e-36 Identity = 91/263 (34.60%), Postives = 156/263 (59.32%), Query Frame = 2
Query: 299 YEQFIPDTPMTRKFGHLRGAKIKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRQDTTALKEWAEGKTEEDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEE----LLEKWFAVVGTSAAGATKDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLEAKAQDAIKAAE 1075
YE +T +K+GHL+GAKI+TVSE A+F V ++ ++T+ + +THL V +ARFK D ++ +G +S ++ YP P QA+ I A+ + + +D ++ + ++++WA+GKT++DV+ +K + S I +A+ ++ ++++Y+R +G+G+ +MEN+G+E T + ++E+W +G S A+ D + Y + K+E E + KEIEIREKKR+AERLE KA+ AI AAE
Sbjct: 54 YESGAANTEFAKKYGHLKGAKIRTVSEAFAEFTDIVGSPVNAVYKNMITDIVSTTHLMVSNARFKRDAVWSLGIVSSLNLLLKNYPEPEQAKQIKSALFECMF--MDEAEVLAEAKSIEDWAQGKTKDDVLAELKGEGSSPIAA----IAKAA------------KNDEFWMYSRFFGLGLVKVMENVGVEFTPDDVYPVMEQWLGTMGKSHFTASSDSDTYFKIRNKLELMETMMKEIEIREKKRMAERLENKAEMAILAAE 298
BLAST of mRNA_E-siliculosus-1a_F_contig1540.3133.1 vs. uniprot
Match: A0A7S4MGY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MGY8_9STRA) HSP 1 Score: 138 bits (347), Expect = 2.170e-32 Identity = 91/264 (34.47%), Postives = 150/264 (56.82%), Query Frame = 2
Query: 299 YEQFIPDTPMTRKFGHLRGAKIKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRQDTTALKEWAEGKTEEDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENI--GLEPTEE--LLEKWF-AVVGTSAAGATKDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLEAKAQDAIKAAE 1075
Y+ +T RK+GHL+G +KTV E +F + + ++ V++ + +THL +ARF+ DP++ +G T+ + YP P + I A++K+IG +D D++R + + +WAEGKT+E+V +K + S + VAR + K +D +++Y+R +GVG+ +ME + G E + ++E+W A +G S+ A D +LY K++ E++ KE+EIREKKR+AERLEAKA AI AE
Sbjct: 57 YQPGAANTEFARKYGHLQGRLVKTVGEAFEEFTAILGRPINALYKGAVSDIVGTTHLITVNARFQRDPVWSLGLLTAMDLITKNYPEPDVGQQIVSALMKSIG--MDEDELRAEAKVVSDWAEGKTKEEVAAALKGEGDSIVSA----VAR----------DAKADD--FWMYSRFFGVGLIRVMEIVAPGTEKDDAYTVMEQWVGASMGKSSFTACSDSDLYFRTKAKLDIMEVMMKEVEIREKKRMAERLEAKADAAIAQAE 302
BLAST of mRNA_E-siliculosus-1a_F_contig1540.3133.1 vs. uniprot
Match: A0A6U1AK03_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AK03_9STRA) HSP 1 Score: 137 bits (345), Expect = 2.680e-32 Identity = 86/238 (36.13%), Postives = 135/238 (56.72%), Query Frame = 2
Query: 362 IKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRQDTTALKEWAEGKTEEDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEP-TEELLEKWFAVVGTSAAGATKDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLEAKAQDAIKAA 1072
+ VS + F Y K ++ +R ++ + + +THLTV F+Y+ FG+G T + F +YP PG A+ IFDA++ ++ LDP + DT A+ EWA+GKTE V+ I + + S I V EK F+Y+R++ +GVF +M +GL+ +E+ LE+WF+ + + D +L+ I ++ AE +FKEIEIREKK+LA+RLE KA+ A +AA
Sbjct: 61 VPPVSVAIQKFNELYSKPIIPMYRALINDLIVTTHLTVVRKDFQYNQFFGLGMQTIYESFFTSYPEPGAAKDIFDAILGSLN--LDPAVVAADTKAVLEWADGKTEAAVLASIDAPEGSAIAETMAAVKAN----------EK------FIYSRVFAIGVFKVMGKVGLDTISEDDLERWFSAMNITTGLIKSDYDLFNGSIERMRDAEQMFKEIEIREKKKLADRLEKKAKSAAEAA 280
BLAST of mRNA_E-siliculosus-1a_F_contig1540.3133.1 vs. uniprot
Match: A0A7S1XEQ4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XEQ4_9RHOD) HSP 1 Score: 136 bits (342), Expect = 2.850e-32 Identity = 80/229 (34.93%), Postives = 124/229 (54.15%), Query Frame = 2
Query: 326 MTRKFGHLRGAKIKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRQDTTALKEWAEGKTEEDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEELLEKWFAVVGTSAAGATKDLNLYLEQIGKIEQAELLFKEIEIR 1012
+ K+GHLRG +KTV++ + DF + + V + + +I+ E+L STHL A F+YDP+FG GF SF F+ YP G L+FDA++KA+ LD Q+R D A++ W E + ED V + +N V + T P+ E WF Y+R++G+G+F +ME +G++ +E L +W + S A + Y I K++ AE LF E+ R
Sbjct: 24 LEEKYGHLRGRSVKTVADALRDFNDTFNRPVFSVYSSIINEFLASTHLARVCAAFRYDPIFGYGFTESFNDFLANYPNEGDRTLLFDAIIKALD--LDRQQIRDDAEAVRSWLESVSSEDEVFSLLDSPGNNKVAQALHYVATA--PYFE----------WF-YSRVFGIGLFKIMEKVGVKIDQEALRRWSEKLNISIAKLEDEWASYGSAIEKMKVAEQLFAEVTAR 237
BLAST of mRNA_E-siliculosus-1a_F_contig1540.3133.1 vs. uniprot
Match: A0A7S4T5P1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T5P1_9STRA) HSP 1 Score: 135 bits (340), Expect = 5.180e-32 Identity = 86/261 (32.95%), Postives = 150/261 (57.47%), Query Frame = 2
Query: 317 DTPMTRKFGHLRGAKIKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRQDTTALKEWAEGKTEEDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEE----LLEKWFAVVGTSAAGAT----KDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLEAKAQDAIKAAE 1075
DT +++G + G KI+TV E ++F + + +++IV++ + +THL +ARF DP++ +G ++ ++ YP A+ I A+++++G +D + +R+D + EWA+GK+++DV + +K + S + VAR KGE+ +++Y+R +G+G+ +ME +G+E + ++E+W VG S T D +LY K+E E + KEIEIREKKR+AERLE KA+ A+K AE
Sbjct: 13 DTEFAKRYGSITGMKIRTVGEAFSEFTRILGQPINALYKSIVSDIVGTTHLITVNARFNRDPIWSLGILSAMDLVLKTYPEQDMAKKIVSAILESVG--IDEEDLRKDAQTVLEWAQGKSKDDVTQAMKGEGDSPLAD----VARAA----------KGEE--FWMYSRYFGIGLIKVMETVGVEMESDTAYSVMEEW---VGKSMEKPTFTACADSDLYFRTKNKLELMETMMKEIEIREKKRMAERLEEKAEMALKKAE 252 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1540.3133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1540.3133.1 >prot_E-siliculosus-1a_F_contig1540.3133.1 ID=prot_E-siliculosus-1a_F_contig1540.3133.1|Name=mRNA_E-siliculosus-1a_F_contig1540.3133.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=376bp MKQTSFLCLSGLAGSLAFVPSTNVVPSSAWTSRSGGSTNPAADAGSRRGIback to top mRNA from alignment at E-siliculosus-1a_F_contig1540:20122..27467- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1540.3133.1 ID=mRNA_E-siliculosus-1a_F_contig1540.3133.1|Name=mRNA_E-siliculosus-1a_F_contig1540.3133.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7346bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1540:20122..27467- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1540:20122..27467- >mRNA_E-siliculosus-1a_F_contig1540.3133.1 ID=mRNA_E-siliculosus-1a_F_contig1540.3133.1|Name=mRNA_E-siliculosus-1a_F_contig1540.3133.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2256bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1540:20122..27467- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |