mRNA_E-siliculosus-1a_F_contig154.3128.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig154.3128.1
Unique NamemRNA_E-siliculosus-1a_F_contig154.3128.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig154.3128.1 vs. uniprot
Match: D8LSX5_ECTSI (Pepsinogen n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX5_ECTSI)

HSP 1 Score: 603 bits (1555), Expect = 2.670e-208
Identity = 383/663 (57.77%), Postives = 390/663 (58.82%), Query Frame = 1 
Query:   40 MITVEPAAPGAVLRADAGGSTTSGVLGLRHLQPDVTEQTEDNRSLLLTEAASPHQHFGVAASRDFVTSRATSDEADTQDAGFGRKGKHRHRQQQNQYRVLLENVDNVQYFGDAMIGNPPQRVKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRNFSNRYDSGSVEGSVIKESMVIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLVRRPRPKDRKHSHQQTTALAQTGSGDDKERRETRSTVGRQPAVGRAHHEVWRRGEAQKARLRGGGSLALKXXXXXXXXXRVHAQGGRNASQEGSGSSGEADWSHGGPGAIGVREMGSRGIDHGMAGVAAGGERGGGGLPSPSIGRMELASEGSFTERRHRTAKGSAVAAKPRLAAAAAEEIGETRERKETGQSHADYAVGDYYDXXXXXXXXXPVIVWTPVVEYRGSLSYWTVQLTGWRTETSTDGSXXXXXXXXXXXXXXIADGQWQRSNSNLSAADGQDGGGHTPTTAGIATTAGPEMCPDGCQAIVDTGSSLLVPPRSQYREVMRQIIGGRTDCRYRYGMTSCSECGSLDDFPDIVISVAVAPXXXXXXXXXXXXXXXXXXYGDSEA 2028
            MI VEPAAPGAVLRADAGGST SGVLGLR LQP+VTE+T D+RSLLLTEA SPHQHF VAASRDFV SRATSDEADTQDAG GRK  HRHRQQQNQYRV+LENVDNVQYFGDAMIGNPPQR+KILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRNFSNRYDSGSVEGSVIKESMVIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTF QLLQEQFGGTGDLFSVYLT                                                                                                                                                   AGGERGGGGLPSPS GRMELASEGSF +RRH TAKGSAVAAK                                                                                                     SNLSAADGQDGGGHT  TAGI TTAGPEMCPDGCQAIVDTGSSLLVPPRSQYREVMRQIIGGR DCRYRYGMTSCSECGS DDFPDIVISVAVAPXXXXXXXXXXXX      +GDSEA
Sbjct:    1 MIAVEPAAPGAVLRADAGGST-SGVLGLRQLQPNVTEETVDDRSLLLTEAGSPHQHFDVAASRDFVKSRATSDEADTQDAGLGRK--HRHRQQQNQYRVVLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRNFSNRYDSGSVEGSVIKESMVIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFAQLLQEQFGGTGDLFSVYLT--------------------------------------------------------------------------------------------------------------------------------------------------RAGGERGGGGLPSPSTGRMELASEGSFIKRRHGTAKGSAVAAK----------------------------------------------------------------------------------------------------QSNLSAADGQDGGGHTAATAGIVTTAGPEMCPDGCQAIVDTGSSLLVPPRSQYREVMRQIIGGRADCRYRYGMTSCSECGSPDDFPDIVISVAVAPXXXXXXXXXXXXRPMKSVHGDSEA 414
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BLAST of mRNA_E-siliculosus-1a_F_contig154.3128.1 vs. uniprot
Match: A0A6H5L1Q3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Q3_9PHAE)

HSP 1 Score: 347 bits (890), Expect = 1.140e-106
Identity = 195/275 (70.91%), Postives = 207/275 (75.27%), Query Frame = 1 
Query: 1201 MGSRGIDHGMAGVAAGGERGGGGLPSPSIGRMELASEGSFTERRHRTAKGSAVAAKPRLAAAAAEEIGETRERKETGQSHADYAVGDYYDXXXXXXXXXPVIVWTPVVEYRGSLSYWTVQLTGWRTETSTDGSXXXXXXXXXXXXXXIADGQWQRSNSNLSAADGQDGGGHTPTTAGIATTAGPEMCPDGCQAIVDTGSSLLVPPRSQYREVMRQIIGGRTDCRYRYGMTSCSECGSLDDFPDIVISVAVAPXXXXXXXXXXXXXXXXXXYGDSE 2025
            MGS G++HGMA V AGGERGGG  PSPS GR ELASEGSF ERRH   KGSAVAAK R        +GET ERK+TG +HA  AVGDY  XXXXXXXX PVIVWTPVVEYRGSLSYWTVQLTGWRTET+TDGS              +A G+WQRS SNLSAADGQDGGGHT TTAGI  TAGPEMCP+GCQAIVDTGSSLLVPPR QYREVM+QIIGGR DCRYRYGMTSCSECGS DDFPDIV+SVAVAP                  +GD E
Sbjct:    1 MGSSGVNHGMARVGAGGERGGGDPPSPSAGRTELASEGSFAERRHGREKGSAVAAKQRGXXXXXXXMGETTERKDTGHAHAHNAVGDYDXXXXXXXXXEPVIVWTPVVEYRGSLSYWTVQLTGWRTETATDGSNTSSTSDVVSTAA-MAGGRWQRSISNLSAADGQDGGGHTATTAGITITAGPEMCPEGCQAIVDTGSSLLVPPRGQYREVMKQIIGGRADCRYRYGMTSCSECGSPDDFPDIVVSVAVAPPPGHGGGAPARRRPMKSAHGDGE 274
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BLAST of mRNA_E-siliculosus-1a_F_contig154.3128.1 vs. uniprot
Match: A0A1V9ZY28_9STRA (Aspartyl protease family A01A n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZY28_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.410e-32
Identity = 77/186 (41.40%), Postives = 109/186 (58.60%), Query Frame = 1 
Query:  304 RHRQQQNQYRVLLENVDNVQYFGDAMIGNPPQRVKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRNFSNRYDSGSVEGSVIKESMVIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            RH    N   + LEN  NVQY G    G PPQ + ++FDTGSSDTW+P +GCTSCG+H+ FD   SST       F + Y SG V G + ++++ +G   V  V  G+V  + + +Q F ADG+VGLAF S++    T P+    F  L+Q+      ++F+ Y+TP P + GS +  GGYDL +V
Sbjct:   26 RHLNASNIPEIPLENYGNVQYVGRIAFGTPPQNLSVVFDTGSSDTWIPGIGCTSCGVHAAFDYSESSTFEDTTEKFIDAYGSGEVGGVIAQDTIGMGPFQVNNVRFGVVTEETRSLQMFIADGLVGLAFESLAKI--TRPT---LFSMLIQDN-PSLENMFAFYMTPDPTRLGSELHIGGYDLSIV 205
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BLAST of mRNA_E-siliculosus-1a_F_contig154.3128.1 vs. uniprot
Match: A0A6A4ZQ35_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZQ35_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.300e-32
Identity = 74/177 (41.81%), Postives = 102/177 (57.63%), Query Frame = 1 
Query:  331 RVLLENVDNVQYFGDAMIGNPPQRVKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRNFSNRYDSGSVEGSVIKESMVIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            RV L+N  NVQY G+   G+PPQ + ++FDTGSSDTW+P + CT CGLHS FD   SST       F + Y SG V G +  +++  G   V  V  G+V  + + +  F ADG+VGL F S++      P+  ST    L  Q     ++F++Y+T  PNQ GS +  GGYDL +V
Sbjct:   33 RVRLQNYGNVQYVGELSFGSPPQVLTVVFDTGSSDTWIPGMSCTECGLHSAFDYTQSSTFQDTHEKFLDSYGSGEVGGVIGVDTIGFGPFVVPNVRFGVVTEETESLGMFIADGLVGLGFESLAKISR--PTLFST----LAAQNADVNNMFAMYMTAEPNQDGSELHLGGYDLSMV 203
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BLAST of mRNA_E-siliculosus-1a_F_contig154.3128.1 vs. uniprot
Match: W4G0A3_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G0A3_9STRA)

HSP 1 Score: 141 bits (355), Expect = 5.700e-32
Identity = 75/177 (42.37%), Postives = 103/177 (58.19%), Query Frame = 1 
Query:  331 RVLLENVDNVQYFGDAMIGNPPQRVKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRNFSNRYDSGSVEGSVIKESMVIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            RV L+N  NVQY G+   G+PPQ + ++FDTGSSDTW+P + CT CGLHS FD   SST       F + Y SG V G +  +++  G   V  V  G+V  + + +  F ADG+VGL F S++      P+  ST    L  Q  G  ++F++Y+T  PNQ GS +  GGYDL +V
Sbjct:   61 RVQLQNYGNVQYVGELSFGSPPQVLTVVFDTGSSDTWIPGMSCTECGLHSAFDYTQSSTFQDTHEKFLDSYGSGEVGGVIGVDTIGFGPFVVPNVRFGVVTEETESLGMFIADGLVGLGFESLAKISR--PTLFST----LAAQNAGVNNMFAMYMTAEPNQDGSELHLGGYDLSMV 231
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BLAST of mRNA_E-siliculosus-1a_F_contig154.3128.1 vs. uniprot
Match: T0R407_SAPDV (Peptidase A1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R407_SAPDV)

HSP 1 Score: 140 bits (352), Expect = 8.290e-32
Identity = 73/176 (41.48%), Postives = 109/176 (61.93%), Query Frame = 1 
Query:  334 VLLENVDNVQYFGDAMIGNPPQRVKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRNFSNRYDSGSVEGSVIKESMVIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            V LEN  NVQY G+   G+P Q + ++FDTGSSDTWVP++ CT+CG+H+ FD   SST  +    F + Y SG+V G +  +++ +G   + K   G+V  + + ++ F ADG+VGLAF S++    T P+    F QL+Q+     G++F+ Y+TP P   GS +  GGYDL +V
Sbjct:   38 VPLENYGNVQYVGELAFGSPQQNLSVVFDTGSSDTWVPSIDCTTCGVHAAFDAGLSSTYHSANEQFMDAYGSGAVRGVIGVDTIGLGPFTIPKARFGVVTSETKALELFIADGLVGLAFESLAKI--TRPT---LFSQLIQDN-PKLGNMFAFYMTPDPTTLGSQLHLGGYDLSVV 207
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BLAST of mRNA_E-siliculosus-1a_F_contig154.3128.1 vs. uniprot
Match: A0A6G0XMZ7_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMZ7_9STRA)

HSP 1 Score: 137 bits (346), Expect = 6.140e-31
Identity = 72/177 (40.68%), Postives = 105/177 (59.32%), Query Frame = 1 
Query:  331 RVLLENVDNVQYFGDAMIGNPPQRVKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRNFSNRYDSGSVEGSVIKESMVIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            R+ L+N  NVQY G+   G PPQ + ++FDTGSSDTW+P + CTSCG+H  FD   S+T       F + Y SG V G +  +++  G   V+ V  G+V  + + ++ F ADG+VGL F S++    T P+  ST VQ    Q    G++F+VY++  P + GS +  GGYDL +V
Sbjct:   45 RLPLQNYGNVQYVGELSFGTPPQVLTVVFDTGSSDTWIPGISCTSCGMHEDFDYTQSTTFQDTREKFLDSYGSGEVGGVIGIDTIGFGPFNVENVRFGVVTEETESLEMFIADGLVGLGFESLAKI--TRPTLFSTLVQ----QNDAVGNMFAVYMSAEPYKTGSELHLGGYDLSMV 215
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BLAST of mRNA_E-siliculosus-1a_F_contig154.3128.1 vs. uniprot
Match: A0A1V9Z503_9STRA (Aspartyl protease family A01A n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z503_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.160e-30
Identity = 70/176 (39.77%), Postives = 105/176 (59.66%), Query Frame = 1 
Query:  334 VLLENVDNVQYFGDAMIGNPPQRVKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRNFSNRYDSGSVEGSVIKESMVIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            + LEN  NVQY G    G PPQ + ++FDTGSSDTW+P + CTSCG+H+ FD  AS + +     F + Y SG V G +  +++ IG   V+    G+V  + + ++ F ADG+VGLAF S++       S+ + F QL+ +     G++F+ Y+TP P + GS +  GGYDL + 
Sbjct:   34 IPLENYGNVQYVGSIAFGEPPQNLSVVFDTGSSDTWIPGLDCTSCGVHATFDYSASPSFIDTEEKFIDAYGSGEVGGVIGIDTIGIGPFTVRNARFGVVTEETRALEMFIADGLVGLAFESLAKI-----SRPTLFAQLILDN-PDLGNMFAFYMTPDPTKLGSELHLGGYDLSVA 203
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BLAST of mRNA_E-siliculosus-1a_F_contig154.3128.1 vs. uniprot
Match: W2R0R5_PHYPN (Peptidase A1 domain-containing protein n=25 Tax=Phytophthora TaxID=4783 RepID=W2R0R5_PHYPN)

HSP 1 Score: 137 bits (344), Expect = 2.680e-30
Identity = 71/177 (40.11%), Postives = 98/177 (55.37%), Query Frame = 1 
Query:  331 RVLLENVDNVQYFGDAMIGNPPQRVKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRNFSNRYDSGSVEGSVIKESMVIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            RV L+N  NVQY G    GNPPQ + ++FDTGSSDTW+P+  C SCG H  FD   S+T +     F + Y SGSV G+V+ +++ I G  V  V  G++  +  ++Q F ADGI GL F  ++           T    L  Q     ++F+ YLTP   + GS +  GGYDL +V
Sbjct:   80 RVTLQNFGNVQYIGSVGFGNPPQYLDVVFDTGSSDTWIPSTSCDSCGSHHQFDAQKSTTFLDTEEKFYDAYGSGSVSGTVVVDTVTISGYTVDSVRFGIIDDESDKLQEFLADGIFGLGFEGLAHISRP------TVFAALAGQNADLENMFAFYLTPEAYRTGSELHIGGYDLSVV 250
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BLAST of mRNA_E-siliculosus-1a_F_contig154.3128.1 vs. uniprot
Match: A0A024UDB4_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UDB4_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.900e-30
Identity = 70/177 (39.55%), Postives = 98/177 (55.37%), Query Frame = 1 
Query:  331 RVLLENVDNVQYFGDAMIGNPPQRVKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRNFSNRYDSGSVEGSVIKESMVIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            RV L+N  NVQY G+   G+PPQ + ++FDTGSSDTW+P + C  CG HS FD   S+T +     F + Y SG V G V  +++  G   V  V  G+V  + + +  F ADG+VGL F S++           T    L   F    ++F++Y+T  PNQ GS +  GGYDL +V
Sbjct:   62 RVKLQNYGNVQYVGELSFGSPPQMLTVVFDTGSSDTWIPGISCAECGFHSAFDYTQSTTFIDTHEKFLDSYGSGEVGGVVGVDTIGFGPFRVPNVRFGVVTEETESLGMFIADGLVGLGFESLAKISRP------TLFTTLASHFTEVRNMFAMYMTAEPNQEGSELHLGGYDLSVV 232
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig154.3128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSX5_ECTSI2.670e-20857.77Pepsinogen n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5L1Q3_9PHAE1.140e-10670.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V9ZY28_9STRA2.410e-3241.40Aspartyl protease family A01A n=1 Tax=Thraustothec... [more]
A0A6A4ZQ35_9STRA3.300e-3241.81Peptidase A1 domain-containing protein n=1 Tax=Aph... [more]
W4G0A3_9STRA5.700e-3242.37Peptidase A1 domain-containing protein n=1 Tax=Aph... [more]
T0R407_SAPDV8.290e-3241.48Peptidase A1 domain-containing protein n=2 Tax=Sap... [more]
A0A6G0XMZ7_9STRA6.140e-3140.68Peptidase A1 domain-containing protein n=1 Tax=Aph... [more]
A0A1V9Z503_9STRA1.160e-3039.77Aspartyl protease family A01A n=1 Tax=Achlya hypog... [more]
W2R0R5_PHYPN2.680e-3040.11Peptidase A1 domain-containing protein n=25 Tax=Ph... [more]
A0A024UDB4_9STRA2.900e-3039.55Peptidase A1 domain-containing protein n=1 Tax=Aph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig154contigE-siliculosus-1a_F_contig154:55317..58679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size2178
Model size2178
Exons4
Ec32 orthologEc-26_001770.1
Ec32 ortholog descriptionpepsinogen
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001,ko01000,ko01002
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.M
EC3.4.23.34
EggNOG OGsKOG1339@1,KOG1339@2759
EggNOG free text desc.aspartic-type endopeptidase activity
KEGG Pathwayko04142,map04142
KEGG koko:K01382
Seed eggNOG ortholog2880.D8LSX5
Seed ortholog evalue2.6e-172
Seed ortholog score612.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig154.3128.1prot_E-siliculosus-1a_F_contig154.3128.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig154 55317..58679 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928049.5759048-CDS-E-siliculosus-1a_F_contig154:55316..566921622928049.5759048-CDS-E-siliculosus-1a_F_contig154:55316..56692Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 55317..56692 -
1696318787.3271282-CDS-E-siliculosus-1a_F_contig154:55316..566921696318787.3271282-CDS-E-siliculosus-1a_F_contig154:55316..56692Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 55317..56692 -
1622928049.5906384-CDS-E-siliculosus-1a_F_contig154:57124..573871622928049.5906384-CDS-E-siliculosus-1a_F_contig154:57124..57387Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 57125..57387 -
1696318787.3396225-CDS-E-siliculosus-1a_F_contig154:57124..573871696318787.3396225-CDS-E-siliculosus-1a_F_contig154:57124..57387Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 57125..57387 -
1622928049.6032157-CDS-E-siliculosus-1a_F_contig154:57723..578541622928049.6032157-CDS-E-siliculosus-1a_F_contig154:57723..57854Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 57724..57854 -
1696318787.3585384-CDS-E-siliculosus-1a_F_contig154:57723..578541696318787.3585384-CDS-E-siliculosus-1a_F_contig154:57723..57854Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 57724..57854 -
1622928049.622647-CDS-E-siliculosus-1a_F_contig154:58271..586791622928049.622647-CDS-E-siliculosus-1a_F_contig154:58271..58679Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 58272..58679 -
1696318787.3701117-CDS-E-siliculosus-1a_F_contig154:58271..586791696318787.3701117-CDS-E-siliculosus-1a_F_contig154:58271..58679Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 58272..58679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig154.3128.1

>prot_E-siliculosus-1a_F_contig154.3128.1 ID=prot_E-siliculosus-1a_F_contig154.3128.1|Name=mRNA_E-siliculosus-1a_F_contig154.3128.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=726bp
MMHSVSAFVAVCCMITVEPAAPGAVLRADAGGSTTSGVLGLRHLQPDVTE
QTEDNRSLLLTEAASPHQHFGVAASRDFVTSRATSDEADTQDAGFGRKGK
HRHRQQQNQYRVLLENVDNVQYFGDAMIGNPPQRVKILFDTGSSDTWVPA
VGCTSCGLHSGFDDVASSTAVAMGRNFSNRYDSGSVEGSVIKESMVIGGM
AVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQL
LQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLVRRPRPKDRKHSHQ
QTTALAQTGSGDDKERRETRSTVGRQPAVGRAHHEVWRRGEAQKARLRGG
GSLALKQQQQQQAQARVHAQGGRNASQEGSGSSGEADWSHGGPGAIGVRE
MGSRGIDHGMAGVAAGGERGGGGLPSPSIGRMELASEGSFTERRHRTAKG
SAVAAKPRLAAAAAEEIGETRERKETGQSHADYAVGDYYDDDDDDDDDEP
VIVWTPVVEYRGSLSYWTVQLTGWRTETSTDGSSSSSSSSDGGSAAAIAD
GQWQRSNSNLSAADGQDGGGHTPTTAGIATTAGPEMCPDGCQAIVDTGSS
LLVPPRSQYREVMRQIIGGRTDCRYRYGMTSCSECGSLDDFPDIVISVAV
APPPGHGGGAAARRRPMKSAYGDSEAGIINDGGKHNRRRTGGGGGGHGGG
SGSRGGGGGGGGGGGGGGGGGGGGTG
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mRNA from alignment at E-siliculosus-1a_F_contig154:55317..58679-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig154.3128.1 ID=mRNA_E-siliculosus-1a_F_contig154.3128.1|Name=mRNA_E-siliculosus-1a_F_contig154.3128.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3363bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig154:55317..58679- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGCATTCAGTCTCAGCCTTCGTTGCTGTCTGCTGTATGATAACGGT
AGAACCAGCGGCACCCGGAGCTGTGTTACGTGCCGATGCTGGTGGAAGCA
CCACCAGCGGAGTGCTTGGTCTACGCCACCTACAACCCGACGTGACGGAG
CAGACGGAAGACAACCGTAGCCTGTTGCTGACGGAAGCCGCATCGCCCCA
CCAACATTTCGGCGTTGCTGCCTCGAGAGATTTCGTGACAAGTCGGGCTA
CGAGCGACGAAGCGGATACCCAGGATGCTGGCTTTGGGCGCAAGGGGAAA
CATCGACACCGGCAGCAACAGAATCAATACCGGGTGCTCCTCGAAAACGT
GGACAACGTGCAGTATTTCGGCGACGCAATGATCGGGAACCCTCCGCAAC
GCGTGAAGGTGGGCTGTTGACTACGTGGGAATTCTGACAAATGGTACATA
CAGTTGTGGAATAAGTTATCCGCCTCGTCCACCGCAGATTTGCAAGCTTG
ACGCTAAGTCTAACTAAACAAGATGGCTGTACGGTAGTACAGTAGTACTG
GATATTTATGGTAGGAACTACTGTATTGAACTACAGTACAACCAGTAAGA
GAAGACCATGAAGATACTATGCTGGACGATGAGTGATACTTTCGAGGCAT
CGGCAACCACGGCCCCAGGACCATTGTCCAGCTACCTCTACACGGCAACA
CGTGTGGCGAACGAGGTCAATATTGTATTTCTTCTCCCAGTCATCGAACC
ATTCTTGTAAAACGTGAAGGGCGTTACTTCTTTTCTTCTACTGGCGCTCT
CTTCCCCCTCGCTACCTCTCGCAAGATCCTGTTTGACACTGGGAGCTCCG
ACACTTGGGTGCCCGCTGTCGGTTGCACAAGTTGCGGGTTGCATTCAGGG
TTTGACGATGTCGCGTCTTCGACAGCCGTGGCCATGGGCAGAAATTTCAG
CAACAGGTTGGTTTAGGTGGTGTTGAATTTGAAGCAGATGATTGTTAGAG
GGCTATAGGGTGACAATCGATTGAAGAGCTATGAACGATCTACTCTTACG
ATTAGCCAAGGTGTCCTAACTTTCAGCAACGACGATGGAAGTGGGGCACG
TGTAGGAGAACGTGGACAGGATTGACAGATTGATCTGGCGATACCAGAGA
GAGGTGTGGAAAGAGTACGTGAGACGAGAGGGGTGAGGGCGGACAGCCAA
CCCGACCGTCGAGGTCACGGAAGGAAGAACATGTCTTCACAGAGAACAGA
GAAGCTCACAGACACTACGTGGACGTTTTATCACCGTGACAGGTACGACA
GCGGTTCGGTTGAAGGAAGCGTGATCAAGGAAAGCATGGTCATCGGCGGT
ATGGCGGTCAAGAAGGTGGAAATGGGCTTGGTGAAGCGCCAAGGGCAGCG
CATCCAGGGTTTCAAGGCGGACGGCATCGTAGGCCTAGCCTTCCCGTCTA
TCTCCACGACTCAAAACACCAGCCCGTCGCAGCACTCCACCTTCGTGCAG
CTGCTGCAAGAGCAGTTCGGGGGGACCGGTGACCTGTTCTCCGTCTACCT
CACTCGTGAGTGTTATGGTCTGACACCGAAGAAGAACCATCCCTATTCGC
TCGGTGCCACCTTGTTTCTGGCCTGTTCGCTCTACACTCTTGTGTATGTG
GTCGACCAACGATGATTTCGCGGCACACACTTTTGGTTCGGCGAGGGAGC
GCCACGTGATCGACCACCTGACCCGGTGCACCACACCACGTTCGCGCTTT
CAGAATCCTTGATACAATTCCTCATTTGCAAACAGCAATATAGGGTTCAG
CTTACCCCTCACATCAAGCAAAAAGAAAGGGACTGGTATGTGTGTATGTA
CCGTCGGCAGGCCTTCACTTGCTGATGCACCGCCGTCTCATCTATTCGCA
ATGGTCGTTTTATTCTTGCGTCGCGTCTGCTGCCCCGCCCCCCCGCACGC
TCCTGACTACATCTACTGTTGTTTTCGTCCAACGCAGCGTCTCCAAATCA
ACCTGGTAGCATGGTCATATTCGGAGGCTATGATCTTGACCTGGTACGTA
GACCGAGGCCGAAGGACAGGAAACACAGCCATCAGCAGACGACGGCTCTT
GCACAAACGGGCAGCGGCGACGATAAAGAGCGCAGAGAGACGAGGAGCAC
CGTCGGTAGACAGCCGGCTGTGGGGAGGGCGCACCACGAGGTCTGGCGAA
GAGGCGAGGCGCAAAAGGCGAGGCTTCGCGGCGGAGGTAGTCTGGCGCTG
AAGCAGCAGCAGCAGCAGCAAGCTCAAGCTCGAGTTCATGCTCAAGGTGG
TCGTAACGCCTCGCAGGAGGGGAGTGGCTCAAGCGGCGAGGCGGATTGGA
GCCATGGTGGTCCCGGTGCAATCGGCGTGAGGGAAATGGGTAGTAGGGGC
ATTGACCATGGTATGGCGGGAGTAGCAGCAGGAGGCGAGAGGGGAGGCGG
CGGTCTGCCTTCGCCCTCCATCGGGAGGATGGAGCTAGCTTCAGAGGGGA
GCTTCACCGAGAGGCGCCACAGGACAGCGAAGGGTAGCGCGGTGGCGGCA
AAGCCAAGGTTAGCAGCAGCGGCGGCGGAAGAAATAGGTGAAACTAGAGA
ACGTAAGGAAACAGGGCAATCACACGCGGACTACGCCGTTGGTGACTACT
ACGACGACGATGATGATGATGACGACGACGAGCCTGTCATCGTCTGGACC
CCGGTGGTAGAGTACCGGGGATCGCTCAGCTACTGGACGGTACAGCTCAC
GGGGTGGCGCACCGAGACGTCCACCGACGGCAGCAGCAGTAGCAGCAGCA
GCAGCGATGGCGGCTCCGCGGCAGCAATAGCCGACGGCCAGTGGCAACGC
AGCAACAGCAACCTCAGCGCCGCGGATGGGCAAGACGGCGGCGGTCACAC
ACCGACGACGGCGGGGATCGCCACCACCGCCGGTCCCGAGATGTGCCCGG
ACGGGTGCCAGGCCATCGTGGACACGGGGTCATCCCTCCTGGTACCGCCG
AGGAGCCAGTACCGCGAGGTGATGCGGCAGATCATCGGCGGCAGGACGGA
TTGCCGGTACCGATACGGGATGACGTCGTGCTCCGAGTGCGGTAGCCTTG
ACGACTTCCCCGACATCGTTATCTCCGTTGCTGTGGCCCCGCCTCCGGGG
CACGGGGGGGGAGCGGCGGCGCGGCGGCGGCCCATGAAGAGTGCATACGG
CGACAGCGAGGCCGGTATCATCAACGACGGAGGGAAACACAACAGGCGGC
GGACGGGTGGCGGTGGCGGTGGCCACGGAGGTGGCAGTGGCAGCAGAGGA
GGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAACCGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig154:55317..58679-

>mRNA_E-siliculosus-1a_F_contig154.3128.1 ID=mRNA_E-siliculosus-1a_F_contig154.3128.1|Name=mRNA_E-siliculosus-1a_F_contig154.3128.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4356bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig154:55317..58679- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGCATTCAGTCTCAGCCTTCGTTGCTGTCTGCTGTATGATAACGGT
AGAACCAGCGGCACCCGGAGCTGTGTTACGTGCCGATGCTGGTGGAAGCA
CCACCAGCGGAGTGCTTGGTCTACGCCACCTACAACCCGACGTGACGGAG
CAGACGGAAGACAACCGTAGCCTGTTGCTGACGGAAGCCGCATCGCCCCA
CCAACATTTCGGCGTTGCTGCCTCGAGAGATTTCGTGACAAGTCGGGCTA
CGAGCGACGAAGCGGATACCCAGGATGCTGGCTTTGGGCGCAAGGGGAAA
CATCGACACCGGCAGCAACAGAATCAATACCGGGTGCTCCTCGAAAACGT
GGACAACGTGCAGTATTTCGGCGACGCAATGATCGGGAACCCTCCGCAAC
GCGTGAAGATGATGCATTCAGTCTCAGCCTTCGTTGCTGTCTGCTGTATG
ATAACGGTAGAACCAGCGGCACCCGGAGCTGTGTTACGTGCCGATGCTGG
TGGAAGCACCACCAGCGGAGTGCTTGGTCTACGCCACCTACAACCCGACG
TGACGGAGCAGACGGAAGACAACCGTAGCCTGTTGCTGACGGAAGCCGCA
TCGCCCCACCAACATTTCGGCGTTGCTGCCTCGAGAGATTTCGTGACAAG
TCGGGCTACGAGCGACGAAGCGGATACCCAGGATGCTGGCTTTGGGCGCA
AGGGGAAACATCGACACCGGCAGCAACAGAATCAATACCGGGTGCTCCTC
GAAAACGTGGACAACGTGCAGTATTTCGGCGACGCAATGATCGGGAACCC
TCCGCAACGCGTGAAGATCCTGTTTGACACTGGGAGCTCCGACACTTGGG
TGCCCGCTGTCGGTTGCACAAGTTGCGGGTTGCATTCAGGGTTTGACGAT
GTCGCGTCTTCGACAGCCGTGGCCATGGGCAGAAATTTCAGCAACAGATC
CTGTTTGACACTGGGAGCTCCGACACTTGGGTGCCCGCTGTCGGTTGCAC
AAGTTGCGGGTTGCATTCAGGGTTTGACGATGTCGCGTCTTCGACAGCCG
TGGCCATGGGCAGAAATTTCAGCAACAGGTACGACAGCGGTTCGGTTGAA
GGAAGCGTGATCAAGGAAAGCATGGTCATCGGCGGTATGGCGGTCAAGAA
GGTGGAAATGGGCTTGGTGAAGCGCCAAGGGCAGCGCATCCAGGGTTTCA
AGGCGGACGGCATCGTAGGCCTAGCCTTCCCGTCTATCTCCACGACTCAA
AACACCAGCCCGTCGCAGCACTCCACCTTCGTGCAGCTGCTGCAAGAGCA
GTTCGGGGGGACCGGTGACCTGTTCTCCGTCTACCTCACTCGTACGACAG
CGGTTCGGTTGAAGGAAGCGTGATCAAGGAAAGCATGGTCATCGGCGGTA
TGGCGGTCAAGAAGGTGGAAATGGGCTTGGTGAAGCGCCAAGGGCAGCGC
ATCCAGGGTTTCAAGGCGGACGGCATCGTAGGCCTAGCCTTCCCGTCTAT
CTCCACGACTCAAAACACCAGCCCGTCGCAGCACTCCACCTTCGTGCAGC
TGCTGCAAGAGCAGTTCGGGGGGACCGGTGACCTGTTCTCCGTCTACCTC
ACTCCGTCTCCAAATCAACCTGGTAGCATGGTCATATTCGGAGGCTATGA
TCTTGACCTGGTACGTAGACCGAGGCCGAAGGACAGGAAACACAGCCATC
AGCAGACGACGGCTCTTGCACAAACGGGCAGCGGCGACGATAAAGAGCGC
AGAGAGACGAGGAGCACCGTCGGTAGACAGCCGGCTGTGGGGAGGGCGCA
CCACGAGGTCTGGCGAAGAGGCGAGGCGCAAAAGGCGAGGCTTCGCGGCG
GAGGTAGTCTGGCGCTGAAGCAGCAGCAGCAGCAGCAAGCTCAAGCTCGA
GTTCATGCTCAAGGTGGTCGTAACGCCTCGCAGGAGGGGAGTGGCTCAAG
CGGCGAGGCGGATTGGAGCCATGGTGGTCCCGGTGCAATCGGCGTGAGGG
AAATGGGTAGTAGGGGCATTGACCATGGTATGGCGGGAGTAGCAGCAGGA
GGCGAGAGGGGAGGCGGCGGTCTGCCTTCGCCCTCCATCGGGAGGATGGA
GCTAGCTTCAGAGGGGAGCTTCACCGAGAGGCGCCACAGGACAGCGAAGG
GTAGCGCGGTGGCGGCAAAGCCAAGGTTAGCAGCAGCGGCGGCGGAAGAA
ATAGGTGAAACTAGAGAACGTAAGGAAACAGGGCAATCACACGCGGACTA
CGCCGTTGGTGACTACTACGACGACGATGATGATGATGACGACGACGAGC
CTGTCATCGTCTGGACCCCGGTGGTAGAGTACCGGGGATCGCTCAGCTAC
TGGACGGTACAGCTCACGGGGTGGCGCACCGAGACGTCCACCGACGGCAG
CAGCAGTAGCAGCAGCAGCAGCGATGGCGGCTCCGCGGCAGCAATAGCCG
ACGGCCAGTGGCAACGCAGCAACAGCAACCTCAGCGCCGCGGATGGGCAA
GACGGCGGCGGTCACACACCGACGACGGCGGGGATCGCCACCACCGCCGG
TCCCGAGATGTGCCCGGACGGGTGCCAGGCCATCGTGGACACGGGGTCAT
CCCTCCTGGTACCGCCGAGGAGCCAGTACCGCGAGGTGATGCGGCAGATC
ATCGGCGGCAGGACGGATTGCCGGTACCGATACGGGATGACGTCGTGCTC
CGAGTGCGGTAGCCTTGACGACTTCCCCGACATCGTTATCTCCGTTGCTG
TGGCCCCGCCTCCGGGGCACGGGGGGGGAGCGGCGGCGCGGCGGCGGCCC
ATGAAGAGTGCATACGGCGACAGCGAGGCCGGTATCATCAACGACGGAGG
GAAACACAACAGGCGGCGGACGGGTGGCGGTGGCGGTGGCCACGGAGGTG
GCAGTGGCAGCAGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAACCGGGCGTCTCCAAATCAACCTGGT
AGCATGGTCATATTCGGAGGCTATGATCTTGACCTGGTACGTAGACCGAG
GCCGAAGGACAGGAAACACAGCCATCAGCAGACGACGGCTCTTGCACAAA
CGGGCAGCGGCGACGATAAAGAGCGCAGAGAGACGAGGAGCACCGTCGGT
AGACAGCCGGCTGTGGGGAGGGCGCACCACGAGGTCTGGCGAAGAGGCGA
GGCGCAAAAGGCGAGGCTTCGCGGCGGAGGTAGTCTGGCGCTGAAGCAGC
AGCAGCAGCAGCAAGCTCAAGCTCGAGTTCATGCTCAAGGTGGTCGTAAC
GCCTCGCAGGAGGGGAGTGGCTCAAGCGGCGAGGCGGATTGGAGCCATGG
TGGTCCCGGTGCAATCGGCGTGAGGGAAATGGGTAGTAGGGGCATTGACC
ATGGTATGGCGGGAGTAGCAGCAGGAGGCGAGAGGGGAGGCGGCGGTCTG
CCTTCGCCCTCCATCGGGAGGATGGAGCTAGCTTCAGAGGGGAGCTTCAC
CGAGAGGCGCCACAGGACAGCGAAGGGTAGCGCGGTGGCGGCAAAGCCAA
GGTTAGCAGCAGCGGCGGCGGAAGAAATAGGTGAAACTAGAGAACGTAAG
GAAACAGGGCAATCACACGCGGACTACGCCGTTGGTGACTACTACGACGA
CGATGATGATGATGACGACGACGAGCCTGTCATCGTCTGGACCCCGGTGG
TAGAGTACCGGGGATCGCTCAGCTACTGGACGGTACAGCTCACGGGGTGG
CGCACCGAGACGTCCACCGACGGCAGCAGCAGTAGCAGCAGCAGCAGCGA
TGGCGGCTCCGCGGCAGCAATAGCCGACGGCCAGTGGCAACGCAGCAACA
GCAACCTCAGCGCCGCGGATGGGCAAGACGGCGGCGGTCACACACCGACG
ACGGCGGGGATCGCCACCACCGCCGGTCCCGAGATGTGCCCGGACGGGTG
CCAGGCCATCGTGGACACGGGGTCATCCCTCCTGGTACCGCCGAGGAGCC
AGTACCGCGAGGTGATGCGGCAGATCATCGGCGGCAGGACGGATTGCCGG
TACCGATACGGGATGACGTCGTGCTCCGAGTGCGGTAGCCTTGACGACTT
CCCCGACATCGTTATCTCCGTTGCTGTGGCCCCGCCTCCGGGGCACGGGG
GGGGAGCGGCGGCGCGGCGGCGGCCCATGAAGAGTGCATACGGCGACAGC
GAGGCCGGTATCATCAACGACGGAGGGAAACACAACAGGCGGCGGACGGG
TGGCGGTGGCGGTGGCCACGGAGGTGGCAGTGGCAGCAGAGGAGGAGGAG
GAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
ACCGGG
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