mRNA_E-siliculosus-1a_F_contig154.3124.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig154.3124.1
Unique NamemRNA_E-siliculosus-1a_F_contig154.3124.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig154.3124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig154contigE-siliculosus-1a_F_contig154:21683..25325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1281
Model size1281
Exons7
Ec32 orthologEc-26_001820.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928048.79976-CDS-E-siliculosus-1a_F_contig154:21682..218681622928048.79976-CDS-E-siliculosus-1a_F_contig154:21682..21868Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 21683..21868 -
1696318786.9148245-CDS-E-siliculosus-1a_F_contig154:21682..218681696318786.9148245-CDS-E-siliculosus-1a_F_contig154:21682..21868Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 21683..21868 -
1622928048.8110669-CDS-E-siliculosus-1a_F_contig154:22689..227831622928048.8110669-CDS-E-siliculosus-1a_F_contig154:22689..22783Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 22690..22783 -
1696318786.9283824-CDS-E-siliculosus-1a_F_contig154:22689..227831696318786.9283824-CDS-E-siliculosus-1a_F_contig154:22689..22783Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 22690..22783 -
1622928048.8298686-CDS-E-siliculosus-1a_F_contig154:23030..231291622928048.8298686-CDS-E-siliculosus-1a_F_contig154:23030..23129Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 23031..23129 -
1696318786.9367175-CDS-E-siliculosus-1a_F_contig154:23030..231291696318786.9367175-CDS-E-siliculosus-1a_F_contig154:23030..23129Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 23031..23129 -
1622928048.8424814-CDS-E-siliculosus-1a_F_contig154:23486..236191622928048.8424814-CDS-E-siliculosus-1a_F_contig154:23486..23619Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 23487..23619 -
1696318786.9474726-CDS-E-siliculosus-1a_F_contig154:23486..236191696318786.9474726-CDS-E-siliculosus-1a_F_contig154:23486..23619Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 23487..23619 -
1622928048.8621407-CDS-E-siliculosus-1a_F_contig154:23883..239511622928048.8621407-CDS-E-siliculosus-1a_F_contig154:23883..23951Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 23884..23951 -
1696318786.9620233-CDS-E-siliculosus-1a_F_contig154:23883..239511696318786.9620233-CDS-E-siliculosus-1a_F_contig154:23883..23951Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 23884..23951 -
1622928048.8755603-CDS-E-siliculosus-1a_F_contig154:24250..243541622928048.8755603-CDS-E-siliculosus-1a_F_contig154:24250..24354Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 24251..24354 -
1696318786.9761446-CDS-E-siliculosus-1a_F_contig154:24250..243541696318786.9761446-CDS-E-siliculosus-1a_F_contig154:24250..24354Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 24251..24354 -
1622928048.8894365-CDS-E-siliculosus-1a_F_contig154:24728..253251622928048.8894365-CDS-E-siliculosus-1a_F_contig154:24728..25325Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 24729..25325 -
1696318786.9861116-CDS-E-siliculosus-1a_F_contig154:24728..253251696318786.9861116-CDS-E-siliculosus-1a_F_contig154:24728..25325Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig154 24729..25325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig154.3124.1prot_E-siliculosus-1a_F_contig154.3124.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig154 21683..25325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig154.3124.1

>prot_E-siliculosus-1a_F_contig154.3124.1 ID=prot_E-siliculosus-1a_F_contig154.3124.1|Name=mRNA_E-siliculosus-1a_F_contig154.3124.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=427bp
MAGSGRQGNVLLASDRNLCVIASSLNCQQPRSQGSARPVPNRAGTPPFPD
LRRRVLPSRPPLLQPRVQSYGKPATRATNPTSRAAPYAGQLIPSSTKAQD
GMPYPSERNSSNSSVSSSKNRATTTEIASAEGRSGRSWSELGRVPGAHGA
RAGGLRGQTRKTLAGTTLECRVGDASQTDPTSIAQCSRRADNGQGSAQSE
KLLTCKRSLSGLAALSEDALVQICEYIHEKDIVRLSTVSPAAFEERLWQQ
LHLVRYGSPNNSCLEGLPFAHSSKLQLQSDFPMYHSRLFAIRCHHACIRS
MVPPDGSCCSRLMFAAEALTREDRLLRGNEETSRLDRAELRRKQHSTRAS
VMRELAIAKRASTEERMALVDVRSAVERHAYAPGCRPKAPQTPSSWREGH
GVRGKGRANGASRILSPTLTGVFDGV*
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mRNA from alignment at E-siliculosus-1a_F_contig154:21683..25325-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig154.3124.1 ID=mRNA_E-siliculosus-1a_F_contig154.3124.1|Name=mRNA_E-siliculosus-1a_F_contig154.3124.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3643bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig154:21683..25325- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCAGGCTCAGGGCGCCAGGGGAATGTCCTACTGGCAAGTGATCGCAA
CTTGTGCGTCATCGCATCAAGCCTGAATTGCCAACAACCCCGATCCCAGG
GCTCTGCCCGTCCTGTTCCAAATCGCGCTGGTACCCCCCCTTTTCCCGAT
TTACGCCGGCGCGTTCTTCCTTCACGCCCACCTCTGCTCCAGCCACGTGT
CCAATCCTATGGAAAGCCAGCAACACGTGCCACAAATCCAACGAGCAGAG
CGGCGCCTTATGCCGGCCAACTGATTCCCTCTTCGACCAAAGCTCAGGAC
GGCATGCCGTATCCCAGCGAGCGCAACAGCAGCAACAGCAGTGTCAGCTC
GTCCAAAAACCGAGCGACTACAACCGAGATTGCCTCGGCAGAGGGCCGCT
CGGGACGCTCTTGGAGCGAGCTGGGAAGGGTTCCTGGTGCCCATGGAGCA
AGAGCGGGAGGTCTTCGGGGACAAACGCGGAAAACATTGGCTGGAACGAC
ACTCGAGTGTCGCGTTGGCGATGCCAGTCAAACAGACCCAACCTCAATCG
CGCAGTGCTCGAGACGTGCGGACAACGGGCAAGGGAGTGCTCAATCTGTG
AGTTCACGATGTAGATCATCGCCAACGCACTACACTACTTGTCGGTATGT
CGTGTTCGCCATGATAAAGCTTACTAATCAAACTTTCAGTACACAGCCGA
CTTCGCAGCTAACCGTAGCCTTCGTAGACGATAGAAACGCCTTCGACCTT
GAGATGTTTGTCTGGTGGCTCGATGCTTTCATGTTTCCTGGCGGGGTGTT
AAGGTATTCAGCATAGTGGATATGCTGTTCACCACTAAACAGTATCCGCT
AAATTGTTCACCCAAGCAGGCTTGAGGGTACCAAGTAACTGGTGTGACAC
GCACTTTGAGCTTCCGGCGTGGTGGACCACCCATCGTGCACCTCATCGAC
GTTGTTGTTGTTGTCCGGCAGGAGAAGCTCCTGACCTGCAAAAGGAGCTT
GTCGGGGCTGGCGGCCCTGTCGGAAGACGCCTTGGTCCAAATATGCGAGT
ACATTCATGAGAAGGACATAGTCCGGTGAGGAACAGAAAAACGACAGTTC
AAGGTTCTTGGTTTTCCCTTTGAGGCTTGCGTATTCGTGCATTTTTTGGA
GCCATCCGGAGGGTGGCAGCCCTTAGTTGTAGCGGCCGTGTCCTTGTTGA
TGTGCCGCCTGCTTTGCATCACGGAAAGCGGACACTTTTTTTCGTTCCGC
GGCAATCTTGCAAAGACTGTTCGCTGTGGGTAAAACCTTTCAAGAGCGCT
CGCTGCATGGTTTGATCACCGGCATCGGCTCCGATGCCCGCTTCCAACGC
GTGCGCGACCTTTCCATCCCATAGGCTGTCGACAGTCTCTCCAGCGGCGT
TCGAGGAGAGGCTGTGGCAGCAGCTACATCTCGTTCGCTATGGTAAGGAG
CGATAGAATAGAGCGCCCCCTTTGCGAATGGGGCGTGTGATGTCCCCGCA
CATGAGCAAAAGGGGTAGAAGACAAGGTCACAATCTCCAGAGGTCGCCAA
GTTCCCGTAGCTTCGAGCTTTCTTAGCGCTAATCCGTTTGCCATCCTCCC
CGGATACAGTAACACCACAGCGAGACGCCCACCATCAACAGACGCAATTC
TTTGCACATACCCCGCATGAAAGCGTCACCGCCTGACTGGCCCATCATGC
CCGCAGGGTCACCGAACAACTCCTGCCTGGAGGGTCTTCCGTTCGCACAC
TCTTCAAAGCTTCAGCTCCAGAGCGACTTCCCGATGTACCACTCGAGGTT
GTTCGCCATTCGGTGCCATCATGCGTGCATCCGTTCCATGTGAGGGTCGA
GAATAACCGCAGCAAGTCAGCAACACGTCTAAATAGACGGTAATTCAAAG
ACACAACCTAGATTGACGCGTTTTCAGGGGAAATCTGCTTTGGCGGGGAT
CGCGGTTTCCGCAACAGGCAGCTGAATGGGGCGATCGATAGCCCGGAGCG
CTCACTATTGGCGGGAGAATTCTGCAACAAAGAGCCTACCCTAGTCACGA
GATTATACTCGACGCTTCACCACCTCTTGGTATGGCAGAAACTCGCATCC
TTCTCATGGCAGCCTTGCGGGAAACTTTCTAGGTGCTCTTGTCGGGCTTA
ACTGTCCTTCCCTTTGGTTGTCCTTACCCTGGCCCGCCGTCTACAGGGTT
CCGCCGGACGGCAGCTGCTGCTCTCGGTTGATGTTTGCAGCCGAAGCGCT
GACGCGGGAGGACCGGTTGTTGCGCGGTAATGAAGAAACAAGCCGGTGAG
AAACATACCAAATCATTTGTTGAAAACCTGTGAGCAACCTTGATACTGCC
CTCCCATCATCGTCATATTCGTTTCCGGTCCCGCATTCCCACGACTTCAA
CGTCAGGAGATGTCGGTGTGTCTCGATCCAAGCCGCTTCCGTTTTCTTTC
AATCTTCCTTGAGCTTTTCTTTTTGCTTCGTACCAAAGCGTTGGGTACGA
TACCTAAATAATTTTTTTCTGGCCGGTGACGGGGTGATGCAGGTTGGACA
GAGCGGAACTTCGTCGGAAGCAGCATTCCACCCGTGCCTCTGTGATGCGA
GAGCTAGCCATTGCGAAGCGGGCCAGCACGGAAGAGGTAGGAGGTACAAT
GTGCTCTGGGTCAGTGAAAATACCGGCATTGTTTTCTTTTTTGTAGCAGC
ACCGGTCTGTTTTGTAGCACCGGCTCAGCTCTCTGTTGAGAGACAGTCGG
TCCCGTCAAAGGATCGTGAATGAATCGATGATAAAACGCTCAACACGTTC
GGGTCTTAGATGAGTGGCAACCTTATTGCTGCTACACCTGAAGAACGCCA
AACAACAGAGAACCGAGTCAACGATTCCAAACAGTCCAAACCTGTTTTGA
AATCCCTGGGGCTGTATCTGCGCGAAACGAGAGAGGAGTGTTTCCCCACC
TCGTCGGCATAGCTACCCCCATGGGGAGACATTCTTTGCACTTCGCGGGT
ACACTGTCCTGCAAGAGCATCGAATCAGTGTCGACTCGGGGACTTGACTA
TCAGAGTTTTCAGTCTGACTCTGGACCCCCCCAGGCACTACAAACACGGG
TGGGGAACGTCCGCTGCGTCGGAAGGTGCTTCCCTCTCAAAACTTGACTG
GTTCGGTTGGCCTTCTGCTAACCCGAGCGTTGTTGTCAGGTGTAATGAAT
ACACGCCGTCTTCGTCACTTGCGCCTTGAACTGACCTGGAACTGGTGACG
TCACGTCGCAGTAGAACCGCTTCGAGAACCTCATCCAGCATGTTTTCATG
CGTTCCGCCCAGTTTCGTGGCCTTTCTCTTCGAGCTGCACTGCGCATTTG
CCTTCTTTGCGCAGCTACTGACGACTAACGACGCGGATCGATTTGATTGG
TTGGCATCGTGAATGACCTCTCCCGCCCTCTGCTCGCCCAATCTCTGTCA
CGTGCAGCGCATGGCGCTGGTCGACGTGCGATCCGCGGTGGAACGACACG
CCTACGCCCCCGGTTGTCGCCCGAAAGCCCCCCAAACTCCATCCTCGTGG
CGAGAAGGCCACGGGGTCAGGGGCAAGGGGAGAGCAAACGGGGCGTCGAG
GATACTATCCCCGACTCTCACCGGCGTGTTTGACGGTGTATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig154:21683..25325-

>mRNA_E-siliculosus-1a_F_contig154.3124.1 ID=mRNA_E-siliculosus-1a_F_contig154.3124.1|Name=mRNA_E-siliculosus-1a_F_contig154.3124.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2562bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig154:21683..25325- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCAGGCTCAGGGCGCCAGGGGAATGTCCTACTGGCAAGTGATCGCAA
CTTGTGCGTCATCGCATCAAGCCTGAATTGCCAACAACCCCGATCCCAGG
GCTCTGCCCGTCCTGTTCCAAATCGCGCTGGTACCCCCCCTTTTCCCGAT
TTACGCCGGCGCGTTCTTCCTTCACGCCCACCTCTGCTCCAGCCACGTGT
CCAATCCTATGGAAAGCCAGCAACACGTGCCACAAATCCAACGAGCAGAG
CGGCGCCTTATGCCGGCCAACTGATTCCCTCTTCGACCAAAGCTCAGGAC
GGCATGCCGTATCCCAGCGAGCGCAACAGCAGCAACAGCAGTGTCAGCTC
GTCCAAAAACCGAGCGACTACAACCGAGATTGCCTCGGCAGAGGGCCGCT
CGGGACGCTCTTGGAGCGAGCTGGGAAGGGTTCCTGGTGCCCATGGAGCA
AGAGCGGGAGGTCTTCGGGGACAAACGCGGAAAACATTGGCTGGAACGAC
ACTCGAGTGTCGCGTTGGCGATGCCAGTCAAACAGACCCAACCTCAATCG
CGCAGTGCTCGAGACGTGCGGACAACGGGCAAGGGAGTGCTCAATCTATG
GCAGGCTCAGGGCGCCAGGGGAATGTCCTACTGGCAAGTGATCGCAACTT
GTGCGTCATCGCATCAAGCCTGAATTGCCAACAACCCCGATCCCAGGGCT
CTGCCCGTCCTGTTCCAAATCGCGCTGGTACCCCCCCTTTTCCCGATTTA
CGCCGGCGCGTTCTTCCTTCACGCCCACCTCTGCTCCAGCCACGTGTCCA
ATCCTATGGAAAGCCAGCAACACGTGCCACAAATCCAACGAGCAGAGCGG
CGCCTTATGCCGGCCAACTGATTCCCTCTTCGACCAAAGCTCAGGACGGC
ATGCCGTATCCCAGCGAGCGCAACAGCAGCAACAGCAGTGTCAGCTCGTC
CAAAAACCGAGCGACTACAACCGAGATTGCCTCGGCAGAGGGCCGCTCGG
GACGCTCTTGGAGCGAGCTGGGAAGGGTTCCTGGTGCCCATGGAGCAAGA
GCGGGAGGTCTTCGGGGACAAACGCGGAAAACATTGGCTGGAACGACACT
CGAGTGTCGCGTTGGCGATGCCAGTCAAACAGACCCAACCTCAATCGCGC
AGTGCTCGAGACGTGCGGACAACGGGCAAGGGAGTGCTCAATCTGAGAAG
CTCCTGACCTGCAAAAGGAGCTTGTCGGGGCTGGCGGCCCTGTCGGAAGA
CGCCTTGGTCCAAATATGCGAGTACATTCATGAGAAGGACATAGTCCGGA
GAAGCTCCTGACCTGCAAAAGGAGCTTGTCGGGGCTGGCGGCCCTGTCGG
AAGACGCCTTGGTCCAAATATGCGAGTACATTCATGAGAAGGACATAGTC
CGGCTGTCGACAGTCTCTCCAGCGGCGTTCGAGGAGAGGCTGTGGCAGCA
GCTACATCTCGTTCGCTATGGCTGTCGACAGTCTCTCCAGCGGCGTTCGA
GGAGAGGCTGTGGCAGCAGCTACATCTCGTTCGCTATGGGTCACCGAACA
ACTCCTGCCTGGAGGGTCTTCCGTTCGCACACTCTTCAAAGCTTCAGCTC
CAGAGCGACTTCCCGATGTACCACTCGAGGTTGTTCGCCATTCGGTGCCA
TCATGCGTGCATCCGTTCCATGGTCACCGAACAACTCCTGCCTGGAGGGT
CTTCCGTTCGCACACTCTTCAAAGCTTCAGCTCCAGAGCGACTTCCCGAT
GTACCACTCGAGGTTGTTCGCCATTCGGTGCCATCATGCGTGCATCCGTT
CCATGGTTCCGCCGGACGGCAGCTGCTGCTCTCGGTTGATGTTTGCAGCC
GAAGCGCTGACGCGGGAGGACCGGTTGTTGCGCGGTAATGAAGAAACAAG
CCGGGTTCCGCCGGACGGCAGCTGCTGCTCTCGGTTGATGTTTGCAGCCG
AAGCGCTGACGCGGGAGGACCGGTTGTTGCGCGGTAATGAAGAAACAAGC
CGGTTGGACAGAGCGGAACTTCGTCGGAAGCAGCATTCCACCCGTGCCTC
TGTGATGCGAGAGCTAGCCATTGCGAAGCGGGCCAGCACGGAAGAGGTTG
GACAGAGCGGAACTTCGTCGGAAGCAGCATTCCACCCGTGCCTCTGTGAT
GCGAGAGCTAGCCATTGCGAAGCGGGCCAGCACGGAAGAGCGCATGGCGC
TGGTCGACGTGCGATCCGCGGTGGAACGACACGCCTACGCCCCCGGTTGT
CGCCCGAAAGCCCCCCAAACTCCATCCTCGTGGCGAGAAGGCCACGGGGT
CAGGGGCAAGGGGAGAGCAAACGGGGCGTCGAGGATACTATCCCCGACTC
TCACCGGCGTGTTTGACGGTGTATAGCGCATGGCGCTGGTCGACGTGCGA
TCCGCGGTGGAACGACACGCCTACGCCCCCGGTTGTCGCCCGAAAGCCCC
CCAAACTCCATCCTCGTGGCGAGAAGGCCACGGGGTCAGGGGCAAGGGGA
GAGCAAACGGGGCGTCGAGGATACTATCCCCGACTCTCACCGGCGTGTTT
GACGGTGTATAG
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