mRNA_E-siliculosus-1a_F_contig1538.3113.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3113.1 vs. uniprot
Match: D7FRF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF2_ECTSI) HSP 1 Score: 542 bits (1396), Expect = 8.510e-186 Identity = 432/494 (87.45%), Postives = 437/494 (88.46%), Query Frame = 1
Query: 1 MDGASRLGRSSEAGGERNWRTRRGQSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGGAGGEPGNRYGDGRWGGHGLGGXXXXXXXXXXXXXXXXGVGNDDGEGGRGGDIYDFDATGGSSRLTRSAEAKKRRGKMRESKLAPKATATLTTEQRVAEILARTRSPAAIATAPTASGGGGGDRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEGAAGKSGLGSSESPRPNLRPXXXXXXXXXXXXXXXXXXXXSSGPLDLSGSLVIGEADMESRRRLLRPPYGGRITDSPVTSSRLWDVPTAAPSLAELEYQLRKLSPLRGMAAGASKARGAGGAGRGSRSPALKGRRGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRGGSRGGRVGRGGEMGGAGHGEAEQNPADLSSVVLVSSLSSTPGRRKSGSGRWATGXXXXXXGVTQTRMGGVDLGVDDLSAAHWE 1482
MDGASRLGRSSE GGERNWRTRRGQSE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DSGGAGGEPGNR+GDGRWGGHGL G XXXXXXXXXXX DIYDFDATGGSSRLTRSAEAKKRRGK +ESKLAPKA ATLTTEQRVAEILARTRSPAAIA APTASGGGG DRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEG AGKSGLGSSESPRPNLRPXXXXXXXXXXXX SSGPLDLSGSLVIGEADMES RRLLRPPYGGRITDSPVTSS WDVPTAAPSLAELEYQLRKLSPLRGMAA ASKARGAG AGRGSRSPALK RRGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GSRGG +GRGGEMGGA HG+AEQ+PADLSSVVLVSSLSSTPGRRKSGSGRWA G GVTQTRMGGVDLGVDDLSAAHWE
Sbjct: 1 MDGASRLGRSSETGGERNWRTRRGQSESPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----DSGGAGGEPGNRHGDGRWGGHGLDGAVGGGXXXXXXXXXXXXXXXXXXXX----DIYDFDATGGSSRLTRSAEAKKRRGKKKESKLAPKAKATLTTEQRVAEILARTRSPAAIAKAPTASGGGGDDRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEGVAGKSGLGSSESPRPNLRPXXXXXXXXXXXXDGDDE---SSGPLDLSGSLVIGEADMESHRRLLRPPYGGRITDSPVTSSGPWDVPTAAPSLAELEYQLRKLSPLRGMAAVASKARGAGSAGRGSRSPALKSRRGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSRGGGIGRGGEMGGARHGDAEQSPADLSSVVLVSSLSSTPGRRKSGSGRWAKGQGQG--GVTQTRMGGVDLGVDDLSAAHWE 481
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3113.1 vs. uniprot
Match: A0A6H5KN35_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN35_9PHAE) HSP 1 Score: 207 bits (528), Expect = 4.740e-55 Identity = 138/157 (87.90%), Postives = 143/157 (91.08%), Query Frame = 1
Query: 391 LTRSAEAKKRRGKMRESKLAPKATATLTTEQRVAEILARTRSPAAIATAPTASGGGGGDRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEGAAGKSGLGSSESPRPNLRPXXXXXXXXXXXXXXXXXXXXSSGPLDLSGSLVIGEADME 861
LTRSA+AKKRRGK +ESKLAP+A ATLTTEQRVAEILARTRSPAAIATAPTA DRGGSEDRPWTGGEGTGTFSDFAKSLRDL+QTGELDLSSEGAAG+SG GSSESPRPNLRP XXXXXXXXXXXXXXX SSGPLDLSGSLVIGEADME
Sbjct: 3 LTRSAKAKKRRGKKKESKLAPEAKATLTTEQRVAEILARTRSPAAIATAPTAGXXXXXDRGGSEDRPWTGGEGTGTFSDFAKSLRDLRQTGELDLSSEGAAGRSGRGSSESPRPNLRPPXXXXXXXXXXXXXXXE---SSGPLDLSGSLVIGEADME 156 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1538.3113.1 >prot_E-siliculosus-1a_F_contig1538.3113.1 ID=prot_E-siliculosus-1a_F_contig1538.3113.1|Name=mRNA_E-siliculosus-1a_F_contig1538.3113.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=559bp MDGASRLGRSSEAGGERNWRTRRGQSESPSPQSGDSDAGIGGGGSGSGGSback to top mRNA from alignment at E-siliculosus-1a_F_contig1538:17179..25002- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1538.3113.1 ID=mRNA_E-siliculosus-1a_F_contig1538.3113.1|Name=mRNA_E-siliculosus-1a_F_contig1538.3113.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7824bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1538:17179..25002- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1538:17179..25002- >mRNA_E-siliculosus-1a_F_contig1538.3113.1 ID=mRNA_E-siliculosus-1a_F_contig1538.3113.1|Name=mRNA_E-siliculosus-1a_F_contig1538.3113.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3354bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1538:17179..25002- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |