mRNA_E-siliculosus-1a_F_contig15288.3058.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15288.3058.1
Unique NamemRNA_E-siliculosus-1a_F_contig15288.3058.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig15288.3058.1 vs. uniprot
Match: A0A7Y6RCN4_9GAMM (VOC family protein n=1 Tax=Halomonas maris TaxID=2729617 RepID=A0A7Y6RCN4_9GAMM)

HSP 1 Score: 99.8 bits (247), Expect = 1.820e-25
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 MTTPAKNTVCLWYDGSAEEAARFYADTFPDSYISAVHRAPGDFPAGKQ 144
            MT PAKNTVCLWYDGSAEEAARFY DTFPDS+I+AVHRAPGDFP+GKQ
Sbjct:    1 MTAPAKNTVCLWYDGSAEEAARFYTDTFPDSFITAVHRAPGDFPSGKQ 48
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BLAST of mRNA_E-siliculosus-1a_F_contig15288.3058.1 vs. uniprot
Match: UPI00036FCE2B (VOC family protein n=1 Tax=Halomonas zhanjiangensis TaxID=1121960 RepID=UPI00036FCE2B)

HSP 1 Score: 99.4 bits (246), Expect = 2.580e-25
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 MTTPAKNTVCLWYDGSAEEAARFYADTFPDSYISAVHRAPGDFPAGKQ 144
            M TPAKNTVCLWYDG AE+AARFYADTFPDS++SAVHRAPGDFP+GKQ
Sbjct:    1 MATPAKNTVCLWYDGGAEDAARFYADTFPDSFVSAVHRAPGDFPSGKQ 48
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BLAST of mRNA_E-siliculosus-1a_F_contig15288.3058.1 vs. uniprot
Match: A0A1J8PRV8_9GAMM (3-dmu-9_3-mt domain-containing protein n=1 Tax=Halomonas sp. QHL1 TaxID=1123773 RepID=A0A1J8PRV8_9GAMM)

HSP 1 Score: 98.2 bits (243), Expect = 7.350e-25
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 MTTPAKNTVCLWYDGSAEEAARFYADTFPDSYISAVHRAPGDFPAGKQ 144
            MTTPAKNT+CLWYDGSAEEAARFYA+TFPDS+I AVH APGDFP+GKQ
Sbjct:    1 MTTPAKNTICLWYDGSAEEAARFYANTFPDSFIRAVHHAPGDFPSGKQ 48
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BLAST of mRNA_E-siliculosus-1a_F_contig15288.3058.1 vs. uniprot
Match: A0A3D4KJG9_HALSX (3-dmu-9_3-mt domain-containing protein n=4 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A3D4KJG9_HALSX)

HSP 1 Score: 97.4 bits (241), Expect = 1.470e-24
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 MTTPAKNTVCLWYDGSAEEAARFYADTFPDSYISAVHRAPGDFPAGKQ 144
            M TPAKNTVCLW+DG AEEAARFYADTFPDS++SAVHRAPGDFP+GK+
Sbjct:    1 MATPAKNTVCLWFDGRAEEAARFYADTFPDSFVSAVHRAPGDFPSGKE 48
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BLAST of mRNA_E-siliculosus-1a_F_contig15288.3058.1 vs. uniprot
Match: UPI00197BE363 (VOC family protein n=1 Tax=Microbulbifer sp. SH-1 TaxID=2681547 RepID=UPI00197BE363)

HSP 1 Score: 93.2 bits (230), Expect = 6.610e-24
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 MTTPAKNTVCLWYDGSAEEAARFYADTFPDSYISAVHRAPGDFPAGKQ 144
            M TPAKNTVCLWYDG AEEAARFYAD FPDS ++AVHR+PGDFP+GK+
Sbjct:    1 MATPAKNTVCLWYDGDAEEAARFYADVFPDSSVNAVHRSPGDFPSGKE 48
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BLAST of mRNA_E-siliculosus-1a_F_contig15288.3058.1 vs. uniprot
Match: UPI001866E593 (VOC family protein n=1 Tax=Microbulbifer hainanensis TaxID=2735675 RepID=UPI001866E593)

HSP 1 Score: 94.7 bits (234), Expect = 1.690e-23
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 MTTPAKNTVCLWYDGSAEEAARFYADTFPDSYISAVHRAPGDFPAGKQ 144
            MTTPAKNT+CLWYDG AE+AARFYA+TFPDS + AVHRAPGDFP+GK+
Sbjct:    1 MTTPAKNTICLWYDGGAEDAARFYAETFPDSSVGAVHRAPGDFPSGKE 48
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BLAST of mRNA_E-siliculosus-1a_F_contig15288.3058.1 vs. uniprot
Match: Q82X49_NITEU (3-dmu-9_3-mt domain-containing protein n=3 Tax=Nitrosomonas TaxID=914 RepID=Q82X49_NITEU)

HSP 1 Score: 94.4 bits (233), Expect = 2.390e-23
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 MTTPAKNTVCLWYDGSAEEAARFYADTFPDSYISAVHRAPGDFPAGKQ 144
            MT PAKNTVCLWYD  AE+AARFYADTFPDS++ AVHRAPGDFP+GKQ
Sbjct:    1 MTIPAKNTVCLWYDDCAEDAARFYADTFPDSFVGAVHRAPGDFPSGKQ 48
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BLAST of mRNA_E-siliculosus-1a_F_contig15288.3058.1 vs. uniprot
Match: A0A0D6EAY8_9GAMM (3-dmu-9_3-mt domain-containing protein n=20 Tax=Halomonas TaxID=2745 RepID=A0A0D6EAY8_9GAMM)

HSP 1 Score: 94.4 bits (233), Expect = 2.390e-23
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 MTTPAKNTVCLWYDGSAEEAARFYADTFPDSYISAVHRAPGDFPAGKQ 144
            M  PAKNTVCLWYDG AEEAARFYADTFPDS++ AVH APGDFP+GKQ
Sbjct:    1 MAIPAKNTVCLWYDGGAEEAARFYADTFPDSFVRAVHHAPGDFPSGKQ 48
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig15288.3058.1 vs. uniprot
Match: A0A1H8VTK3_9GAMM (2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Aquisalimonas asiatica TaxID=406100 RepID=A0A1H8VTK3_9GAMM)

HSP 1 Score: 94.4 bits (233), Expect = 2.390e-23
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 MTTPAKNTVCLWYDGSAEEAARFYADTFPDSYISAVHRAPGDFPAGK 141
            MTTPAKNTVCLWY+  AEEAARFYADTFPDSY+ A+HRAPGD+P+GK
Sbjct:    1 MTTPAKNTVCLWYEHGAEEAARFYADTFPDSYVGAIHRAPGDYPSGK 47
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig15288.3058.1 vs. uniprot
Match: A0A2K1Q1R3_9GAMM (3-dmu-9_3-mt domain-containing protein n=1 Tax=Lysobacter silvestris TaxID=1645665 RepID=A0A2K1Q1R3_9GAMM)

HSP 1 Score: 94.4 bits (233), Expect = 2.390e-23
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 MTTPAKNTVCLWYDGSAEEAARFYADTFPDSYISAVHRAPGDFPAGKQ 144
            MTTPAKNT+CLWYDG AEEAA+FYA TFPDS + AVHRAPGD+PAGKQ
Sbjct:    1 MTTPAKNTICLWYDGDAEEAAKFYAATFPDSSVGAVHRAPGDYPAGKQ 48
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15288.3058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y6RCN4_9GAMM1.820e-2589.58VOC family protein n=1 Tax=Halomonas maris TaxID=2... [more]
UPI00036FCE2B2.580e-2587.50VOC family protein n=1 Tax=Halomonas zhanjiangensi... [more]
A0A1J8PRV8_9GAMM7.350e-2587.503-dmu-9_3-mt domain-containing protein n=1 Tax=Hal... [more]
A0A3D4KJG9_HALSX1.470e-2485.423-dmu-9_3-mt domain-containing protein n=4 Tax=unc... [more]
UPI00197BE3636.610e-2481.25VOC family protein n=1 Tax=Microbulbifer sp. SH-1 ... [more]
UPI001866E5931.690e-2381.25VOC family protein n=1 Tax=Microbulbifer hainanens... [more]
Q82X49_NITEU2.390e-2383.333-dmu-9_3-mt domain-containing protein n=3 Tax=Nit... [more]
A0A0D6EAY8_9GAMM2.390e-2383.333-dmu-9_3-mt domain-containing protein n=20 Tax=Ha... [more]
A0A1H8VTK3_9GAMM2.390e-2382.982-polyprenyl-6-hydroxyphenyl methylase / 3-demethy... [more]
A0A2K1Q1R3_9GAMM2.390e-2383.333-dmu-9_3-mt domain-containing protein n=1 Tax=Lys... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15288contigE-siliculosus-1a_F_contig15288:845..988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size144
Model size144
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko00001,ko00002,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.S
EC2.1.1.222,2.1.1.64
EggNOG OGs1N7IY@1224,1S25M@1236,1XNFA@135619,COG3865@1,COG3865@2
EggNOG free text desc.3-demethylubiquinone-9 3-methyltransferase
KEGG ModuleM00117
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ReactionR04988,R05614,R08769,R08781
KEGG koko:K00568
KEGG rclassRC00003,RC00392,RC01895
Seed eggNOG ortholog574966.KB898646_gene3245
Seed ortholog evalue4.9e-19
Seed ortholog score99.4
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928038.3113425-CDS-E-siliculosus-1a_F_contig15288:844..9881622928038.3113425-CDS-E-siliculosus-1a_F_contig15288:844..988Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15288 845..988 +
1696318782.7511544-CDS-E-siliculosus-1a_F_contig15288:844..9881696318782.7511544-CDS-E-siliculosus-1a_F_contig15288:844..988Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15288 845..988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15288.3058.1prot_E-siliculosus-1a_F_contig15288.3058.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15288 845..988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15288.3058.1

>prot_E-siliculosus-1a_F_contig15288.3058.1 ID=prot_E-siliculosus-1a_F_contig15288.3058.1|Name=mRNA_E-siliculosus-1a_F_contig15288.3058.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=48bp
MTTPAKNTVCLWYDGSAEEAARFYADTFPDSYISAVHRAPGDFPAGKQ
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mRNA from alignment at E-siliculosus-1a_F_contig15288:845..988+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15288.3058.1 ID=mRNA_E-siliculosus-1a_F_contig15288.3058.1|Name=mRNA_E-siliculosus-1a_F_contig15288.3058.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=144bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15288:845..988+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACAACGCCAGCAAAGAATACCGTTTGCCTTTGGTACGATGGCAGCGC
AGAAGAAGCCGCACGCTTTTATGCTGATACTTTTCCTGATTCGTACATTA
GTGCAGTCCACCGTGCACCAGGAGATTTTCCAGCGGGTAAGCAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15288:845..988+

>mRNA_E-siliculosus-1a_F_contig15288.3058.1 ID=mRNA_E-siliculosus-1a_F_contig15288.3058.1|Name=mRNA_E-siliculosus-1a_F_contig15288.3058.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=288bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15288:845..988+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACAACGCCAGCAAAGAATACCGTTTGCCTTTGGTACGATGGCAGCGC
AGAAGAAGCCGCACGCTTTTATGCTGATACTTTTCCTGATTCGTACATTA
GTGCAGTCCACCGTGCACCAGGAGATTTTCCAGCGGGTAAGCAAATGACA
ACGCCAGCAAAGAATACCGTTTGCCTTTGGTACGATGGCAGCGCAGAAGA
AGCCGCACGCTTTTATGCTGATACTTTTCCTGATTCGTACATTAGTGCAG
TCCACCGTGCACCAGGAGATTTTCCAGCGGGTAAGCAA
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