mRNA_E-siliculosus-1a_F_contig1039.304.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1039.304.1
Unique NamemRNA_E-siliculosus-1a_F_contig1039.304.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: A0A6H5L227_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L227_9PHAE)

HSP 1 Score: 522 bits (1345), Expect = 1.070e-178
Identity = 305/331 (92.15%), Postives = 310/331 (93.66%), Query Frame = 1
Query:    1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRRDLADSPAGVYACGALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAIMLATHTFARQKLADYAAAXXXXXXXXXXXXXXXAVAKRPTRTNRMG 993
            VRTRLQMAGSQGKTLGVRSCVA+TFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRR LADSPAGVYACGALGGGVNSFIVTPVELVRTRLMLQ+GRKPASSA   XXXXXXXXXXXXX   DGRLRGPLDCVRQVVRRNGVFGMWQA    R  VTLTRDSLGMGAFFLAF+TVKKALAERRYGSS ISSGELSG+RPPDFD LLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEV+PGGVATLSRL REGGLR LYMGWPVAFGRGIPGAAIMLATHTFA QKL DYAAAXXXXXXXXXXXXX  AVAKRPTRTNRMG
Sbjct:   37 VRTRLQMAGSQGKTLGVRSCVANTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRRGLADSPAGVYACGALGGGVNSFIVTPVELVRTRLMLQHGRKPASSATAGXXXXXXXXXXXXXXXXDGRLRGPLDCVRQVVRRNGVFGMWQAMPGLR--VTLTRDSLGMGAFFLAFDTVKKALAERRYGSSIISSGELSGKRPPDFDLLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVVPGGVATLSRLVREGGLRNLYMGWPVAFGRGIPGAAIMLATHTFASQKLGDYAAAXXXXXXXXXXXXXA-AVAKRPTRTNRMG 364          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: A0A4D9CYW2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYW2_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.110e-42
Identity = 108/274 (39.42%), Postives = 141/274 (51.46%), Query Frame = 1
Query:   88 IRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRR----------DLAD---SPAGVYACGALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSI-SSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAIMLAT 867
            ++ FYKG++ PLAAQ V+KA+IF TN  A++ L  R          +L+    S   ++ CGAL GGVN+ +VTPVELVR RL++  G                               GP DCV Q  R+ G  G+W        + TL RD  G+GA+FLAF   K  L   +  +  +   G  SG        LL+AGS AG+ FW VALP D  K+V+Q AG  R     G    + RL REGGLR+L+ GW  AFGR +PG+A  LAT
Sbjct:    1 MQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSPPCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSQGA----------------------------YSGPRDCVGQAWRQGGFRGLWIGL-----LPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSAKGLRGGGRESGEEKLGVGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAGVGREGRREGMGQVIERLVREGGLRRLFRGWQGAFGRAVPGSAATLAT 241          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: A0A225WEC9_9STRA (Mitochondrial Carrier (MC) protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WEC9_9STRA)

HSP 1 Score: 160 bits (404), Expect = 9.860e-41
Identity = 106/294 (36.05%), Postives = 150/294 (51.02%), Query Frame = 1
Query:    1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRRDLADSPAGV-----YACGALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAIMLAT 867
            +RTRLQ++ ++ +  G   C   T + E +R  YKG   P  +Q V+KAVIFTT+   R  +    L   P           GA+ GGVN+F+VTPVEL+R RL +QY   P +                       R RG   CV QVVR  G+  MW+         T+ RDSLG+  +FL ++  K+ L+         ++G+L      +   LL AG+  G+ FW +ALP D  K++IQA G++  +   G V+T ++L RE G+ +LY GW  AF RGIP AAI   T
Sbjct:   13 IRTRLQLSPTRFR--GFFHCAQQTIQQESMRGLYKGFLPPFFSQGVYKAVIFTTSSALRNDVLPNVLLLQPVLTPTIVSLTTGAVAGGVNAFLVTPVELIRNRLQVQYDNHPETR----------------------RYRGSFHCVTQVVRNEGIAAMWKGLT-----TTVIRDSLGVAFYFLGYDFAKQRLS---------ANGKLG-----ETATLLTAGAFGGVSFWTIALPFDTIKSLIQADGKE--DKYTGLVSTTTKLVREEGVMQLYRGWQAAFSRGIPSAAITFWT 261          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: G4ZGI7_PHYSP (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=G4ZGI7_PHYSP)

HSP 1 Score: 159 bits (403), Expect = 2.780e-40
Identity = 112/295 (37.97%), Postives = 149/295 (50.51%), Query Frame = 1
Query:    1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRAL----DRRDLADSPAGV-YACGALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKAL-AERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAIMLAT 867
            +RTRLQ+  S  +  G   C   T + E +R  YKG   P  +Q V+KAVIFTT+   R  +        L  +P  V    GA+ GGVN+F+V PVELVR RL +QY  +PAS                       R RG   CV QVVR  G+  MW+         T+ RDSLG+  +FL ++  K+ L A  R G ++                LL AG+  G+ FW VALP D  K++IQA GR  G+   G V++ ++L RE G+ +L+ GW  AF RGIP AAI   T
Sbjct:   40 IRTRLQL--SPARFCGFFHCAQQTVQQESMRGLYKGFLPPFFSQGVYKAVIFTTSSTLRNDVLPHVPLLQLVLTPTVVSLTAGAVAGGVNAFLVAPVELVRNRLQVQYDNQPASR----------------------RYRGAYHCVTQVVRNEGIAAMWKGLT-----TTVIRDSLGVAFYFLGYDFAKQRLTASGRLGETAT---------------LLTAGAFGGVSFWAVALPFDTIKSLIQADGRD-GKYT-GLVSSTAKLVREEGVMQLFRGWQAAFSRGIPSAAITFWT 288          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: A0A024U8N0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U8N0_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.270e-40
Identity = 99/287 (34.49%), Postives = 150/287 (52.26%), Query Frame = 1
Query:    1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRRDLADSPAGVYAC-GALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQA-SCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAI 855
            +RTRLQ + S   +    + V +T R+EG+R  YKG   P  +Q V+K+VIF+  G AR  +       SP  +  C GA+ GG+N+F+V PVELVR RL +Q  ++  ++A                     + +G +D +RQV +  G   +W+  SC      T+TRD+LG+  +F+ F+ +K  L +    +S +                LVAG++ G+ FW +ALP D  KTVIQ +  + G    G + T   L R+ G+ +++ GW  AF RGIPGAAI
Sbjct:   36 IRTRLQHSSSSSFS----TVVGTTLRHEGLRGLYKGFFPPFFSQAVYKSVIFSVQGRARSFMSTHMDRPSPLFLSTCAGAIAGGINAFLVAPVELVRNRLQIQ--QQDTANA---------------------KYKGSIDVIRQVTKHEGPMALWKGLSC------TITRDALGVAFYFVTFDCIKTVLPDDWAPASRV----------------LVAGASGGIAFWTIALPFDTVKTVIQVSAHEAGTQPHGMIRTGLHLVRQHGVGRVFQGWQAAFSRGIPGAAI 273          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: W2PPC7_PHYPN (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PPC7_PHYPN)

HSP 1 Score: 159 bits (401), Expect = 4.990e-40
Identity = 111/295 (37.63%), Postives = 153/295 (51.86%), Query Frame = 1
Query:    1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARR------ALDRRDLADSPAGVYACGALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAIMLAT 867
            +RTRLQ++ S+ +  G   C   T + E +R  YKG   P  +Q V+KA+IFTT+   R       +L +  L  +   + A GA+ GGVN+F+V PVELVR RL +QY  +P +                       + RG   CV QVVR  G+  MW+         T+ RDSLG+  +FL ++  KK LAE         SG+L      +   LL AG+  G+ FW VALP D  K++IQA G K G+   G  ++ +RL RE G+ +L+ GW  AF RGIP AAI   T
Sbjct:   38 IRTRLQLSPSRFR--GFFHCAQQTIQQETMRGLYKGFLPPFFSQGVYKAIIFTTSSTLRNDVLPHISLLQPVLTPTVVSLTA-GAIAGGVNAFLVAPVELVRNRLQVQYDSQPETR----------------------KYRGAYHCVTQVVRTEGITAMWKGLT-----TTVIRDSLGVAFYFLGYDFAKKRLAE---------SGKLG-----EMATLLTAGAFGGVSFWAVALPFDTIKSLIQADG-KTGKYT-GLASSTARLVREEGVMQLFRGWQAAFSRGIPSAAITFWT 286          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: A0A6G0WZ38_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZ38_9STRA)

HSP 1 Score: 158 bits (400), Expect = 5.870e-40
Identity = 103/291 (35.40%), Postives = 147/291 (50.52%), Query Frame = 1
Query:    1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRRDLADSPAGVYAC-GALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAIMLATH 870
            +RTRLQ A S   T   RS V+ T + EG+R  YKG   P  +Q V+K+VIF+T    R  L    ++ SP  +    GA+ GG+N+F+V PVELVR RL +Q    PA S                        +  LD +R VV   G+  +W+         T+TRD+LG+  +F+ F+ V+ +L E    +S +                L+AG+  G+ FW +ALP D  KTV+Q  G K G  +   + T  RL ++ GLR+++ GW  AF RGIP AAI   T+
Sbjct:   36 IRTRLQHASSSSSTT-FRSVVSKTLQEEGVRGLYKGFFPPFFSQAVYKSVIFSTQARVRAFLTENTVSPSPLFLSTTSGAIAGGLNAFVVAPVELVRNRLQVQ----PAHSKT---------------------YQTSLDVLRHVVHSEGIPALWKGLSS-----TITRDALGVALYFVGFDFVRSSLPEEMDPTSRV----------------LIAGAAGGISFWAIALPFDTIKTVVQVDGGKNGNSM---LKTGWRLVQDHGLRRIFQGWQAAFSRGIPSAAITFYTY 276          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: A0A6U3AS15_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6U3AS15_9EUKA)

HSP 1 Score: 155 bits (393), Expect = 4.640e-39
Identity = 105/299 (35.12%), Postives = 148/299 (49.50%), Query Frame = 1
Query:    1 VRTRLQMAGSQG-KTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRRDLADSPAGVYACGALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQA-AGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAIMLATHTFARQKL 891
            +RTR+Q A   G +  G   C A T + EG++AFYKG+ FPL AQ V+K+VIFT+    +    + D       V  CGA  GG+NSF+VTPVEL+R  LM+QY  K                          R R  ++ V+ + +RNG+ G+W+         T  RDS+G+ ++F +FE   + L     G S   +             LL++G + G+ FW+ A PLD  K+++Q  A   RG  I    + L  L R G L KL+ G+ VA  RGIPGAAI        R+ L
Sbjct:   31 IRTRVQTADVSGVQYRGAIDCAAKTLKYEGLQAFYKGITFPLLAQAVYKSVIFTSYHAMQSLFPQTDGPPPIPRVMLCGAAAGGINSFVVTPVELIRNNLMVQYDHKTEPR----------------------RWRNSMELVKDLTKRNGITGLWRGIGP-----TFLRDSIGVASWFGSFEVCLRYLCPH-IGLSGTPA-------------LLLSGVSGGIGFWVAAFPLDTIKSLVQVEASSHRGSAI----SVLLSLVRNGELHKLFRGFGVAVMRGIPGAAITFTVQRKTREAL 284          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: W4GSW4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GSW4_9STRA)

HSP 1 Score: 155 bits (393), Expect = 5.870e-39
Identity = 104/292 (35.62%), Postives = 145/292 (49.66%), Query Frame = 1
Query:    1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRRDLADSPAGVYAC-GALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQA-SCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFD---HLLVAGSTAGLCFWLVALPLDMTKTVIQAA--GRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAI 855
            +RTRLQ + S        S V +T R+EG+R  YKG   P  +Q V+K+VIF+  G  R  +       SP  +  C GA+ GG+N+F+V PVELVR RL +Q                              + +G  D VRQV+   G   +W+  SC      T+TRD+LG+  +F+AF+ VK AL                   P ++D    +LVAG+T G+ FW +ALP D  KTVIQ +       E   G + T  +L R+ G+ +++ GW  AF RGIPGAAI
Sbjct:   37 IRTRLQYSSSSS----FASVVCTTLRHEGLRGLYKGFFPPFFSQAVYKSVIFSAQGHVRSFMSAHMDHPSPLLLSTCAGAIAGGINAFLVAPVELVRNRLQIQQQHA--------------------------KYKGTADVVRQVIMHEGPLALWKGLSC------TITRDALGVACYFMAFDCVKSAL-------------------PSEWDTTSRVLVAGATGGIAFWSIALPFDTIKTVIQVSTPSTSHQEQPLGMIRTGLQLVRQHGIGRVFHGWQAAFSRGIPGAAI 273          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: A0A662XR70_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XR70_9STRA)

HSP 1 Score: 156 bits (394), Expect = 6.590e-39
Identity = 106/291 (36.43%), Postives = 151/291 (51.89%), Query Frame = 1
Query:    1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARR------ALDRRDLADSPAGVYACGALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAI 855
            +RTRLQ++ ++ +  G   C   T + E +R  YKG   P  +Q V+KAVIFTT+   R       +L +  L  S   +   GA+ GGVN+F+V PVELVR RL +QY    AS                       R RG   C+ QV+R  GV  +W+         T+ RDSLG+  +FL F+  ++ L          +SG L      +   LL AG+  G+ FW VALP D  K++IQA GR+ G+   G +++ +RL +EGG+ +L+ GW  AF RG+P AAI
Sbjct:   52 IRTRLQLSPTRFR--GFFHCATQTIQRESVRGLYKGFLPPFFSQGVYKAVIFTTSATLRNDVLPNISLLQPFLTPSIVSLTG-GAVAGGVNAFLVAPVELVRNRLQVQYDNHVASR----------------------RYRGAYHCLTQVIRTEGVLALWKGLT-----TTVIRDSLGVACYFLGFDFARQRLT---------TSGRLG-----ETATLLTAGAFGGISFWAVALPFDTVKSLIQADGRE-GKYT-GLISSTTRLVQEGGVAQLFRGWQAAFSRGVPSAAI 296          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L227_9PHAE1.070e-17892.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CYW2_9STRA2.110e-4239.42Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A225WEC9_9STRA9.860e-4136.05Mitochondrial Carrier (MC) protein n=1 Tax=Phytoph... [more]
G4ZGI7_PHYSP2.780e-4037.97Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
A0A024U8N0_9STRA3.270e-4034.49Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W2PPC7_PHYPN4.990e-4037.63Uncharacterized protein n=6 Tax=Phytophthora paras... [more]
A0A6G0WZ38_9STRA5.870e-4035.40Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6U3AS15_9EUKA4.640e-3935.12Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
W4GSW4_9STRA5.870e-3935.62Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A662XR70_9STRA6.590e-3936.43Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1039contigE-siliculosus-1a_F_contig1039:31251..36175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size978
Model size2109
Exons6
Ec32 orthologEc-04_002720.1
Ec32 ortholog descriptionMitochondrial carrier domain
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko02000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGsKOG0758@1,KOG0758@2759
EggNOG free text desc.mitochondrial transport
KEGG Pathwayko04714,map04714
KEGG TC2.A.29.8
KEGG koko:K15109
Seed eggNOG ortholog2880.D7FT39
Seed ortholog evalue4.8e-142
Seed ortholog score510.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1039.304.1prot_E-siliculosus-1a_F_contig1039.304.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1039 32364..36157 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927541.5681863-UTR-E-siliculosus-1a_F_contig1039:31250..323631622927541.5681863-UTR-E-siliculosus-1a_F_contig1039:31250..32363Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1039 31251..32363 -
1696318576.3726478-UTR-E-siliculosus-1a_F_contig1039:31250..323631696318576.3726478-UTR-E-siliculosus-1a_F_contig1039:31250..32363Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1039 31251..32363 -
1622927541.644007-UTR-E-siliculosus-1a_F_contig1039:36157..361751622927541.644007-UTR-E-siliculosus-1a_F_contig1039:36157..36175Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1039 36158..36175 -
1696318576.4578125-UTR-E-siliculosus-1a_F_contig1039:36157..361751696318576.4578125-UTR-E-siliculosus-1a_F_contig1039:36157..36175Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1039 36158..36175 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927541.5791557-CDS-E-siliculosus-1a_F_contig1039:32363..325591622927541.5791557-CDS-E-siliculosus-1a_F_contig1039:32363..32559Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 32364..32559 -
1696318576.389414-CDS-E-siliculosus-1a_F_contig1039:32363..325591696318576.389414-CDS-E-siliculosus-1a_F_contig1039:32363..32559Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 32364..32559 -
1622927541.5892158-CDS-E-siliculosus-1a_F_contig1039:32887..330081622927541.5892158-CDS-E-siliculosus-1a_F_contig1039:32887..33008Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 32888..33008 -
1696318576.4072268-CDS-E-siliculosus-1a_F_contig1039:32887..330081696318576.4072268-CDS-E-siliculosus-1a_F_contig1039:32887..33008Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 32888..33008 -
1622927541.5991468-CDS-E-siliculosus-1a_F_contig1039:33526..337171622927541.5991468-CDS-E-siliculosus-1a_F_contig1039:33526..33717Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 33527..33717 -
1696318576.417691-CDS-E-siliculosus-1a_F_contig1039:33526..337171696318576.417691-CDS-E-siliculosus-1a_F_contig1039:33526..33717Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 33527..33717 -
1622927541.6121368-CDS-E-siliculosus-1a_F_contig1039:34276..345201622927541.6121368-CDS-E-siliculosus-1a_F_contig1039:34276..34520Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 34277..34520 -
1696318576.4269896-CDS-E-siliculosus-1a_F_contig1039:34276..345201696318576.4269896-CDS-E-siliculosus-1a_F_contig1039:34276..34520Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 34277..34520 -
1622927541.6222286-CDS-E-siliculosus-1a_F_contig1039:35488..356471622927541.6222286-CDS-E-siliculosus-1a_F_contig1039:35488..35647Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 35489..35647 -
1696318576.4362948-CDS-E-siliculosus-1a_F_contig1039:35488..356471696318576.4362948-CDS-E-siliculosus-1a_F_contig1039:35488..35647Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 35489..35647 -
1622927541.6322653-CDS-E-siliculosus-1a_F_contig1039:36090..361571622927541.6322653-CDS-E-siliculosus-1a_F_contig1039:36090..36157Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 36091..36157 -
1696318576.450222-CDS-E-siliculosus-1a_F_contig1039:36090..361571696318576.450222-CDS-E-siliculosus-1a_F_contig1039:36090..36157Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 36091..36157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1039.304.1

>prot_E-siliculosus-1a_F_contig1039.304.1 ID=prot_E-siliculosus-1a_F_contig1039.304.1|Name=mRNA_E-siliculosus-1a_F_contig1039.304.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=326bp
MAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNG
IARRALDRRDLADSPAGVYACGALGGGVNSFIVTPVELVRTRLMLQYGRK
PASSAAAGSSRSSGSAAGGGGRGGDGRLRGPLDCVRQVVRRNGVFGMWQA
SCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRR
PPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATL
SRLFREGGLRKLYMGWPVAFGRGIPGAAIMLATHTFARQKLADYAAATTS
HPPPPAAAAAVAAVAKRPTRTNRMG*
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mRNA from alignment at E-siliculosus-1a_F_contig1039:31251..36175-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1039.304.1 ID=mRNA_E-siliculosus-1a_F_contig1039.304.1|Name=mRNA_E-siliculosus-1a_F_contig1039.304.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4925bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:31251..36175- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGAGAACGAGGCTGCAGATGGCGGGAAGCCAAGGCAAGACGCTAGGCGT GCGTTCGTGCGTTGCCAGCACCTTCAGGAACGAAGGTATGAAACCGGTAG TTGCACGTGTGTTGTGTGCTGCCGTGTGTTTGTTGCGCGGGTTGTGTGCC TTGTTGCGTGGATAGTGTGGCATTCGCCATGTTGCTGTTGTTCTTGTTGG TGTTTTCTTCTTTCGTGAAGGCGTTCTGAGATGTGTTCAGTACCGCCTAT TCCCTGACCTCTACGCGTAAAGAAGGTTAAGGGGTCACGTCCCATTTTAG TTGCGCAACCTTAAGCGTGACTGCACGAGCTCTCTCTGTCGTTTTTCACT AGAGTACACGTGTTTCTTCGGTCCTCTATGCGGAATATTTTAGCGTTCAT CAAGCTCCCTCCCTCCCGCTCTCTCTTTCTCTCTCTCTGTCTCTCTCCCT CTGTCTGTCTGTCTCTGTCTGTCTCTGTCTGTTTCTCTCTGTCTCTCTGC TGTGATTTACCATGTACACGGCCGACAGGTATTCGGGCGTTCTACAAGGG AATGGCGTTCCCTCTGGCGGCACAGGTTGTGTTCAAGGCCGTCATCTTCA CGACCAACGGCATCGCCAGACGAGCCTTGGACAGAAGAGACCTGGCCGAC TCTCCGGCAGGGGTGTATGCTTGCGGAGCCCTGGGGGGTGAGACAAGGCG ACAGCCTACTTGCGTGTTTTTCCATGTTTGTTTTCGTCCTGTCCGTAGTC TCAAATGTATTCCGGGTGTGGTTGGAGACAAAAGAGGCCGGGGGGGGTAG CACCACCCTCGTAGACAGCCTCAAATTTGTTCCAGGTGATCTTTCTTGGG ACGAGAGCGGAGGCGGGTACGTGGGGGTCACCGCCCCCGCAGGCAGAGAA AATAATGCCGTTCTTTTTAAGGGATACCCTCACTCACAGCGGAAGGCGGT CCGAACAGGTGCTTGTTTTGTGTTTCCTGAGAGAAGGCAGGCCACTTCTA GGCGGCACCGGTGCTTGTTGCCGTACCAAGCCCGTGAAACCCATCCAATT GAAGCGGACATGAAAGCGCCAGCTGACACTTGGTTGTCGGTGATCTCACA TTTAAAAACCCGTTGTAACCTCCTTTGGGTCCGCACTGGTATAGCCCGAG GCAAAACACTGGCTACTGCCACCATCTAACCCGCAAGCAGGGGCACAATA AAAGGAGTACAACAAGCCCGCTTTGGCGGTACGCGCACACTGTGTAAAAC TCCTGTTTTTTGTCTCGAGCAAGAATGACTTGTTTGTCTTTTTGTCCGTC ATCCAATCAACGTGTCAACGAAACCACCTACATAATTTCGTTATTTTACA AAGTTGATCCGCACTCACTCACTCGTGGGTAAGCACGTGGGGCGTAGCCT CGTTATTTCTGCGGGCATCCCCTCGACGGACGGCTGCATCAGGAACGATT TTGCAGGGCTCGGAGCAATCGACTCGAAGGGCGCACACAAAAGCAGAAAT GAGGAAGTCGTGGGTGTACCGAAGCCTTGCATCATCCTCGCGGCAGAACT AATTCCCACGGATTCGGACGCTCCCCGCTCCTCCACTTCCGCCCTTTAAT CCTCGTCGTTTGATTTTGCGTGCGTACCAAACCATCGACACACAACCAAA AACAGGCGGGGTCAATTCCTTCATTGTCACACCGGTGGAGCTCGTGCGGA CACGGCTCATGCTGCAGTACGGACGGAAGCCGGCGAGCTCTGCTGCTGCT GGTAGCTCGAGGAGTTCCGGCTCTGCGGCGGGTGGCGGGGGGCGGGGCGG GGACGGTCGACTGCGGGGCCCCTTGGACTGCGTTCGCCAGGTCGTCCGTC GCAACGGGGTGTTTGGCATGTGGCAGGCGAGTTGTAGGGAACGAAGAATG TGAGAGGCGACGACAACGGCGATGATTTGTTGTCGAGCATTAGTTTACTC ATGCGATGGCGTTCAGAGGTGGTTGGTTGCCTGGGACAGAGACGATTCGA CCTGAAGAAAGGAAGAAAGAGATGAATTTGTTTTGTCTTGGGTACGCGCA CCTACTTCCAAGGCGTAGGTTATATTTTGAAAGTTTTGGTCTTTGCTCTA TCCGGCTGCGTCACAATCACTTTGAGATAGTACGAAAGGGAGCACTACTC ATGGCCACCCGTCAGGAAAAGTGATGAAAGTACGAGGTACATAATGATGA GAGCACCCTTGCACAGCAGCGAGACAATTGTGGTAAAATCAAGTATTTGG TCGTTTCGCGCATGGAGCAATTCCGTACCAGCAAAAAACAAATGCAGCGA TGCGATCTTTATGGTGCCGGTAATTGAGTGCTTACAGTACCAGCAACAAC CAAGTGCAGCGATGTTTGTGACGTCGCAAACTGAACACTTGAGCGTAACC CCCCTTCATCGCGTCGTCGCTCCTTGGCCTTCGTTTCACCGCCGAAGCAG GGTCTCAGGGTGACCCTGACGCGCGACTCACTGGGCATGGGCGCTTTCTT CCTGGCTTTCGAAACGGTCAAGAAGGCGCTGGCAGAACGTCGGTACGGCA GCAGCAGCATCAGCAGCGGCGAGTTGTCGGGAAGGCGCCCCCCGGACTTC GATCACCTGCTGGTGGCGGGCTCCACAGCCGGTCTCTGCTTTTGGCTGGG TGAGACGAAGGTTTCCTGCTCGGACGTCGTTTTTCCTTTTGCCGGCACTG GGGAGCGGGTTCTAAACACCCTTCCTTCTGGGAAACCTTAGCATTATAAC ACCTTGAGACCCCCCCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCT GTTGTTGCTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGT TGTTGTTGTTGTGGTTGTCTGCACATTGAAAACCGTTCCGGTCTCCGCTC ACTACCTTCAAGTACCCGGACCGCCTTCCGTAATCAGCCGACTGCCCACT GAAAGGGTACCACACCTTTCTAGAAATCAAACAATGTGTGCTCAACACAA ACACAACCTTGAGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCT CTGAACGCTTGTACCTTTGAGACCCCCCCCCATCCCCGAACACCGCACCC CTCGCAATACACACCAGTGGCGCTTCCTTTGGACATGACCAAGACAGTAA TCCAGGCAGCAGGGCGGAAGAGGGGCGAGGTCATCCCCGGAGGCGTTGCC ACCCTGTCCCGCCTCTTTCGAGAGGGCGGACTTAGAAAGTAAGAAAAGAA AATGGAATAAGGTGTTTTTGTGCTGGCCGATTGCACGTCCGGTTTTGTTG TCCGCCCGTGCGGACTGAGGTACGCTTGGATAGTCTTGCGAAAGGCTTCA ACGAGGCCGAACAAACTCGGCGCGATGATTGAAGCTGCCCAAGCTCATCC AGTCGGCAAAGTAACCGAGACAACAACGACAACGAACGAACCACCGACAC TTTCGTGTGACCCACCTCAATGAGAAGGCGTTCTCGATAGGGTCGGCCAC TCTTTTCAGCCGACGTTTTTTTTTTTTTTTTTGTTCCCGTCTGTCGGGGG CGAACCGCGCGCGCAGACTGTACATGGGCTGGCCGGTGGCGTTCGGGCGC GGGATTCCAGGGGCGGCCATCATGCTGGCGACGCACACGTTCGCCCGCCA GAAGCTCGCGGACTACGCGGCTGCGACCACCTCGCACCCACCGCCGCCGG CGGCGGCGGCGGCAGTGGCTGCGGTGGCAAAGCGGCCCACTCGGACGAAC CGGATGGGCTGACTGTTTTTTTTGTACGGTTTCGACTGGTGCGATGCTAT TGGCCAAGGATTACGGTTCTGCGGCGCGATGGTGGTTCTGCGTACCCCCT CCCCCGTCCCTGCGTGAGGTTGGAGGGGAGCGGCCGGTACCGAGTTTTGA CATGGGTGTGTGTTTTCGCAAGCAGTAGCAACCGGGGGGGGGTGGTGCGT GAAAGGGTGACCGATGCCTTGTCCGCGTGTCTATACTGACCCCGAGTCGG TGGACAGGCGGGCAGGGTCTCGATCATGGCGGAAAGTTCGAACCCGGAGG AAATATAATCGGGTTAGACCGGGATGGTTCGCCCGTGCTCCTGTGTCCCA AATTTTGACGTGTTGCATCGTCGCAAGCCAACGACGGTGTGATCGATGGC CGGCATGCTCTGACCCAGGCGTGCGGCTCTTCTTGTTTCATTTTTTTGTC AGAAGAGATGGAGATGTGCCAACCCTTGTGGAGATAGATATTTCTACTTG AGGGGGTGTCGTTTGGTGAGGGGGTTTGTTATTCTGTTCCGAGGGTTGCT TCGGTGTTCCATTCTAACCGACTACTACGGAGCAATGTCCTGTGAACGGT GTACCCATATGGTATTATTTGTAAGCCTGAGGCAATTCTGCCAAACGAAA AGCCTCCGTTTGCCGTGCATATGGCGGCCAGCCAACTCAAAGAACGATTT TCTCGGGGTACAGTAGTAGTAGCGGCGATGCCACAGACAAACGCACCGTC ATGCCTCATCGAATTTTGTTTTGTGTTGTGGTGCCACATGTCGCATTCTC TCCTCGAACGCTGGCGTATTTCCCAACTCCACGAGAGTTTCTGTGTGACG TTTACGTTGTGTTGTGTTTTGTTCCATGGTCATGTTGGTGGATGTATGTC ACACAGAGCTCCACGCTTGATCTGTGCTACCGCCAGTCCAGTGGTGAACT ATCTATCTATGTGATCCCGCACAATATGTGCAGTGCGCTGCAGTTCGAAT TCGGACGTCTCTTTCGGTGCTGTCCTTGTGCAATGTTGTTTGGATCCGAT GTCGTGGCTGTACATACTATTCGACGGCACGTGTCCTTTCTGCGGGCCCC CGTTGGCTAGCCTCATGCGCGCGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1039:31251..36175-

>mRNA_E-siliculosus-1a_F_contig1039.304.1 ID=mRNA_E-siliculosus-1a_F_contig1039.304.1|Name=mRNA_E-siliculosus-1a_F_contig1039.304.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1956bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:31251..36175- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGGAAGCCAAGGCAAGACGCTAGGCGTGCGTTCGTGCGTTGCCAG
CACCTTCAGGAACGAAGATGGCGGGAAGCCAAGGCAAGACGCTAGGCGTG
CGTTCGTGCGTTGCCAGCACCTTCAGGAACGAAGGTATTCGGGCGTTCTA
CAAGGGAATGGCGTTCCCTCTGGCGGCACAGGTTGTGTTCAAGGCCGTCA
TCTTCACGACCAACGGCATCGCCAGACGAGCCTTGGACAGAAGAGACCTG
GCCGACTCTCCGGCAGGGGTGTATGCTTGCGGAGCCCTGGGGGGTATTCG
GGCGTTCTACAAGGGAATGGCGTTCCCTCTGGCGGCACAGGTTGTGTTCA
AGGCCGTCATCTTCACGACCAACGGCATCGCCAGACGAGCCTTGGACAGA
AGAGACCTGGCCGACTCTCCGGCAGGGGTGTATGCTTGCGGAGCCCTGGG
GGGCGGGGTCAATTCCTTCATTGTCACACCGGTGGAGCTCGTGCGGACAC
GGCTCATGCTGCAGTACGGACGGAAGCCGGCGAGCTCTGCTGCTGCTGGT
AGCTCGAGGAGTTCCGGCTCTGCGGCGGGTGGCGGGGGGCGGGGCGGGGA
CGGTCGACTGCGGGGCCCCTTGGACTGCGTTCGCCAGGTCGTCCGTCGCA
ACGGGGTGTTTGGCATGTGGCAGGCGAGTTGTAGGGAACGAAGAATGCGG
GGTCAATTCCTTCATTGTCACACCGGTGGAGCTCGTGCGGACACGGCTCA
TGCTGCAGTACGGACGGAAGCCGGCGAGCTCTGCTGCTGCTGGTAGCTCG
AGGAGTTCCGGCTCTGCGGCGGGTGGCGGGGGGCGGGGCGGGGACGGTCG
ACTGCGGGGCCCCTTGGACTGCGTTCGCCAGGTCGTCCGTCGCAACGGGG
TGTTTGGCATGTGGCAGGCGAGTTGTAGGGAACGAAGAATGGTGACCCTG
ACGCGCGACTCACTGGGCATGGGCGCTTTCTTCCTGGCTTTCGAAACGGT
CAAGAAGGCGCTGGCAGAACGTCGGTACGGCAGCAGCAGCATCAGCAGCG
GCGAGTTGTCGGGAAGGCGCCCCCCGGACTTCGATCACCTGCTGGTGGCG
GGCTCCACAGCCGGTCTCTGCTTTTGGCTGGGGTGACCCTGACGCGCGAC
TCACTGGGCATGGGCGCTTTCTTCCTGGCTTTCGAAACGGTCAAGAAGGC
GCTGGCAGAACGTCGGTACGGCAGCAGCAGCATCAGCAGCGGCGAGTTGT
CGGGAAGGCGCCCCCCGGACTTCGATCACCTGCTGGTGGCGGGCTCCACA
GCCGGTCTCTGCTTTTGGCTGGTGGCGCTTCCTTTGGACATGACCAAGAC
AGTAATCCAGGCAGCAGGGCGGAAGAGGGGCGAGGTCATCCCCGGAGGCG
TTGCCACCCTGTCCCGCCTCTTTCGAGAGGGCGGACTTAGAAATGGCGCT
TCCTTTGGACATGACCAAGACAGTAATCCAGGCAGCAGGGCGGAAGAGGG
GCGAGGTCATCCCCGGAGGCGTTGCCACCCTGTCCCGCCTCTTTCGAGAG
GGCGGACTTAGAAAACTGTACATGGGCTGGCCGGTGGCGTTCGGGCGCGG
GATTCCAGGGGCGGCCATCATGCTGGCGACGCACACGTTCGCCCGCCAGA
AGCTCGCGGACTACGCGGCTGCGACCACCTCGCACCCACCGCCGCCGGCG
GCGGCGGCGGCAGTGGCTGCGGTGGCAAAGCGGCCCACTCGGACGAACCG
GATGGGCTGAACTGTACATGGGCTGGCCGGTGGCGTTCGGGCGCGGGATT
CCAGGGGCGGCCATCATGCTGGCGACGCACACGTTCGCCCGCCAGAAGCT
CGCGGACTACGCGGCTGCGACCACCTCGCACCCACCGCCGCCGGCGGCGG
CGGCGGCAGTGGCTGCGGTGGCAAAGCGGCCCACTCGGACGAACCGGATG
GGCTGA
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