mRNA_E-siliculosus-1a_F_contig1516.2992.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2992.1 vs. uniprot
Match: D7FT51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT51_ECTSI) HSP 1 Score: 507 bits (1306), Expect = 6.630e-173 Identity = 409/450 (90.89%), Postives = 412/450 (91.56%), Query Frame = 3
Query: 42 MAKRGRGGEGGPEAGDKXXXXXXXXXXXXXSQQQRLGDPSSSPADAQTGAEGAAGKKLPKRTDKTTGAEKAEARQAKGNGXXXXXXXGAAGRKKSEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDQQTVVDVCLDFCDPHERFFHGIRALLAHSYLQEAAGAGLSPLVDLAVAQGAVGTVLSTDADDDAVFGFVTALPLKYLAKEHECVQAVTKFLLEKASKAGRGSEMEEVLGEGTQEKVGLLVSERMINCPMQAVPKLHEALVEDIAWAIENEISEEHREKFRFDRFIVVAPCDDTGGADPPGQAMLSDFYFSRFDDEVLLQEADFFFPMGCASQAXXXXXXXXXXXXXXXXXRYVVGVMPAKKLQECVQGVAQMVG 1391
MAKRGRGGEGG EAGDK SQQQRLGD S SPADAQTGAEG A KKLP+RTDK GAEK EARQAKGNG GAAGRK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGDQQTVVDVCLDFCDPHERFFHGIRALLAHSYLQEAAGAGLSPLVDLAVAQGAVGTVLSTDADDDAVFGFVTALPLKYLAKEHECVQAVTKFLLEKASKAGRGSEMEEVLGEGTQEKVGLLVSERMINCPMQAVPKLHEALVEDIAWAIENEISEEHREKFRFD+FIVVAPCDD GGA P G AMLSDFYFSRFDDEVLLQEADFFFPMGCASQAXXXXXXXXXXXXXXXXXRYVVG+MPAKKL ECVQGVAQMVG
Sbjct: 1 MAKRGRGGEGGSEAGDKKKKKGQTQQNGSESQQQRLGDASLSPADAQTGAEGVACKKLPRRTDKVAGAEKGEARQAKGNGEK-----GAAGRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AGDQQTVVDVCLDFCDPHERFFHGIRALLAHSYLQEAAGAGLSPLVDLAVAQGAVGTVLSTDADDDAVFGFVTALPLKYLAKEHECVQAVTKFLLEKASKAGRGSEMEEVLGEGTQEKVGLLVSERMINCPMQAVPKLHEALVEDIAWAIENEISEEHREKFRFDKFIVVAPCDDAGGAGP-GLAMLSDFYFSRFDDEVLLQEADFFFPMGCASQAXXXXXXXXXXXXXXXXXRYVVGIMPAKKLGECVQGVAQMVG 443
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2992.1 vs. uniprot
Match: A0A6V1VD28_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VD28_HETAK) HSP 1 Score: 137 bits (344), Expect = 7.680e-32 Identity = 78/201 (38.81%), Postives = 122/201 (60.70%), Query Frame = 3
Query: 630 QQTVVDVCLDFCDPHERFFHGIRALLAHSYLQEAAGAGLSPLVDLAVAQGAVGTVLSTDADDDAVFGFVTALPLKYLAKEHECVQAVTKFLLEKASKAGRGSEMEEVLGEGTQEKVGLLVSERMINCPMQAVPKLHEALVEDIAWAIENEISEEHREKFRFDRFIVVAPCDDTGGADPPGQAMLSDFYFSRFDDEVLLQEA 1232
++ +V+V DFCDP+E+ FH +R L + G +S L D+ VAQ +VGT++ ++ +D VF F+T L L++ K+ ++ +T L K +A + +E EE+L K GL++S RMIN P+Q +P LH +L +DI WA ENEISEEHR +F D I ++PC+ G G+ + Y++ F++E+ QEA
Sbjct: 91 EKGIVNVSFDFCDPNEKHFHSVRKFL--ETFTPSKGLNISDLADIIVAQASVGTLVCSEDED--VFAFITVLNLQF-RKDSRSIKQITDTLASKCPQASK-TEFEEILDSN---KTGLVISRRMINLPLQLIPPLHSSLQDDIDWAKENEISEEHRNQFNLDHLIFLSPCEIVGA----GKTV----YYTHFEEEIFSQEA 274
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2992.1 vs. uniprot
Match: A0A662WXS7_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXS7_9STRA) HSP 1 Score: 114 bits (284), Expect = 3.740e-24 Identity = 79/206 (38.35%), Postives = 118/206 (57.28%), Query Frame = 3
Query: 642 VDVCLDFCDPHERFFHGIRALLAHSYLQEAAGAGLSPLVDLAVAQGAVGTVLSTDADDDAVFGFVTALPLKYLAKEHECVQAVTKFLLEKASKAGRGSEMEEVLGEGTQEKVGLLVSERMINCPMQAVPKLHEALVEDIAWAIENEISEEHREKFRFDRFIVVAPC--DDTGGAD--PPGQAMLSDF-----YFSRFDDEVLLQEA 1232
VDV F DP E FH ++ L +YL +S L + V Q GT++ + +DD ++GF+TAL LK A+E VQ + +++ +K A ++++L + + VGL+++ERM+N P Q VP LH AL EDI WAI NE +EE RE F+ D F+V+A C + +GG D G+ + + +F F+DE L QEA
Sbjct: 77 VDVEFLFSDPREAHFHSVKQFLL-TYLPPTQPFDVSGLANAVVNQVTTGTMVCVEGEDD-IYGFITALSLKRYAQETS-VQQILQYVTKKCPSAEL-PRLQQIL---STKNVGLVLNERMVNLPYQLVPALHSALHEDIEWAITNEDTEELRESFQLDYFLVLATCTVEKSGGGDGSKKGKKTKTAYAQTAKFFHNFEDEFLEQEA 275
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2992.1 vs. uniprot
Match: A0A3R7GKF3_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GKF3_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.420e-23 Identity = 78/210 (37.14%), Postives = 116/210 (55.24%), Query Frame = 3
Query: 642 VDVCLDFCDPHERFFHGIRALLAHSYLQEAAGAGLSPLVDLAVAQGAVGTVLSTDADDDAVFGFVTALPLKYLAKEHECVQAVTKFLLEKASKAGRGSEMEEVLGEGTQEKVGLLVSERMINCPMQAVPKLHEALVEDIAWAIENEISEEHREKFRFDRFIVVAPCDD--TGGAD--PPGQAMLSDF-----YFSRFDDEVLLQEADFFF 1244
V V F DP E FH ++ L +YL + +S L + V Q GT++ + +DD V+GF+TAL LK +E VQ + +++ +K SE+ + + VGL+++ERM+N P Q VP +H AL EDI WAIENE +EE R F+ D F+++A C + +GG D G+ + + F+ F+DE L QEAD F
Sbjct: 83 VSVDFLFSDPREAHFHSVKQFLL-AYLPPSQPFDVSGLANAVVGQVTAGTMVCVEGEDD-VYGFITALNLKSFTQETS-VQQILQYVTKKCP----NSELPRLQQILNTKNVGLVLNERMVNLPYQLVPAVHSALHEDIEWAIENEDTEELRNSFKMDYFLILATCTEEKSGGNDGAKKGKKTKTTYDQTVKLFNNFEDEFLEQEADLSF 285
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2992.1 vs. uniprot
Match: A0A812YV05_9DINO (Bcp1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YV05_9DINO) HSP 1 Score: 110 bits (276), Expect = 6.660e-23 Identity = 65/173 (37.57%), Postives = 101/173 (58.38%), Query Frame = 3
Query: 624 GDQQTVVDVCLDFCDPHERFFHGIRALLAHSYLQEAAGAGLSPLVDLAVAQGAVGTVLSTDADDDA-VFGFVTALPLKYLAKEHECVQAVTKFLLEKASKAGRGSEMEEVLGEGTQEKVGLLVSERMINCPMQAVPKLHEALVEDIAWAIENEISEEHREKFRFDRFIVVAPC 1139
G++ ++DV DF DP F +R L+ H E S L DL VAQ +VGT+++ ++ + F TAL + A ++AV K+LL KA A + S + + + GL++SERM+N P + P L+ L++D+AWA ENE+SEEH+++F F RF+++APC
Sbjct: 50 GEEDDLLDVDFDFVDPRPVHFKSVRRLVEHLLPGEEKTFDASGLADLIVAQASVGTMVTVPHEEGGDAYAFATALNVSRHAAAPS-LKAVRKYLLGKAPSAVKRSALAKAW-DAEDGATGLILSERMLNMPPEIAPTLYSCLMDDLAWARENEVSEEHKQQFHFKRFVLIAPC 220
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2992.1 vs. uniprot
Match: D0NE35_PHYIT (BCCIP family protein n=22 Tax=Phytophthora TaxID=4783 RepID=D0NE35_PHYIT) HSP 1 Score: 110 bits (274), Expect = 7.640e-23 Identity = 75/209 (35.89%), Postives = 115/209 (55.02%), Query Frame = 3
Query: 642 VDVCLDFCDPHERFFHGIRALLAHSYLQEAAGAGLSPLVDLAVAQGAVGTVLSTDADDDAVFGFVTALPLKYLAKEHECVQAVTKFLLEKASKAGRGSEMEEVLGEGTQEKVGLLVSERMINCPMQAVPKLHEALVEDIAWAIENEISEEHREKFRFDRFIVVAPC-DDTGGADPPGQAMLSDF-------YFSRFDDEVLLQEADFFF 1244
V+V F DP E FH ++ L +YL +S L + V Q GT++ + +DD V+GF+TAL LK E +Q + +++ +K S+++++L + VGL+++ERM+N P Q VP LH AL EDI WAIENE +EE R F+ D F+++A C ++ G+ + S +F F+DE L QEA+ F
Sbjct: 76 VNVDFLFSDPREAHFHSVKQFLL-AYLPPTQPFDVSGLANAIVGQVTAGTMVCVEGEDD-VYGFITALNLKSFVNETS-IQQILQYVTKKCPSTEL-SKLQQILNT---KNVGLVLNERMVNLPYQLVPALHSALHEDIEWAIENEDTEELRNSFKMDYFLILATCTEEKSGSSGSKKGKKSKTAYEQTAKFFHNFEDEFLEQEAELSF 277
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2992.1 vs. uniprot
Match: U5D053_AMBTC (Protein BCCIP homolog n=4 Tax=Amborella trichopoda TaxID=13333 RepID=U5D053_AMBTC) HSP 1 Score: 108 bits (271), Expect = 1.980e-22 Identity = 68/202 (33.66%), Postives = 119/202 (58.91%), Query Frame = 3
Query: 630 QQTVVDVCLDFCDPHERFFHGIRALLAHSYLQEAAGAGLSPLVDLAVAQGAVGTVLSTDADDDAVFGFVTALPLKYLAKEHECVQAVTKFLLEKASKAGRGSEMEEVLGEGTQEKVGLLVSERMINCPMQAVPKLHEALVEDIAWAIENEISEEHREKFRFDRFIVVAPCDDTG-GADPPGQAMLSD-----FYFSRFDDEV 1217
+ TV++V L+F DP FHG++ LL ++YL LS VDL + Q VGTV+ DD A FG ++A+ L+ K+H C+ + FLL+ + ++++ +LGE Q VGLLVS+R++N P++ +P L++AL ++++WA E+E ++E R+ F+F ++++ G P G+ L + ++ +DE+
Sbjct: 69 ENTVINVDLEFFDPKPDDFHGLKMLL-NNYLDVKVW-DLSGFVDLILGQTTVGTVVKP-GDDGAPFGVISAINLERY-KDHRCIVDLKSFLLDVCHEKSISNQLKILLGEQAQ-GVGLLVSQRVVNLPLEILPPLYDALFDEVSWATEDEPTQEQRDSFQFKYYLIITRIYQISHGGKPKGKGALGENDAEPILYNHLEDEI 265
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2992.1 vs. uniprot
Match: A0A7S0J8Z1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J8Z1_9EUKA) HSP 1 Score: 107 bits (268), Expect = 2.070e-22 Identity = 84/226 (37.17%), Postives = 120/226 (53.10%), Query Frame = 3
Query: 624 GDQQTVVDVCLDFCDPHERFFHGIRALLAHSYLQEAAGAGLSPLVDLAVAQGAVGTVLSTDADDDAVFGFVTALPLKYLAKEHECVQAVTKFLLEKASKAGRGSEMEEVLGEGTQEKVGLLVSERMINCPMQAVPKLHEALVEDIAWAIENEISEEHREKFRFDRFIVVA---PCDDTGGAD--PP-----------GQAM------LSDFYFSRFDDEVLLQEAD 1235
GD + + D+ F DP IRALL L AAGA L DL Q AVGTV+ ADDD VFGF++ALPL++L + CV+ + F+ E+ ++ + +L T+ VGL++SER+IN P+Q VP ++ ++DI WA NE R F F+ ++VA P + GGAD PP G+A+ L +F+R D+E L EA+
Sbjct: 23 GDSERL-DIEFTFFDPKPNDSPHIRALLQAGTLCNAAGANAVDLADLLSQQAAVGTVIK--ADDD-VFGFISALPLQHL-RSTSCVKPLLAFVNERCAQPLAKQALTALLS--TKRSVGLIISERLINAPLQLVPDALDSFMQDIEWAKHNEEDHVLRAAFHFENLLLVAAVNPAEKFGGADTEPPTKKRKAKSGDKGKAIGLDWGQLQALHFTRVDEEALAYEAE 241
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2992.1 vs. uniprot
Match: A0A3M6VP95_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VP95_9STRA) HSP 1 Score: 108 bits (270), Expect = 2.730e-22 Identity = 73/199 (36.68%), Postives = 110/199 (55.28%), Query Frame = 3
Query: 660 FCDPHERFFHGIRALLAHSYLQEAAGAGLSPLVDLAVAQGAVGTVLSTDADDDAVFGFVTALPLKYLAKEHECVQAVTKFLLEKASKAGRGSEMEEVLGEGTQEKVGLLVSERMINCPMQAVPKLHEALVEDIAWAIENEISEEHREKFRFDRFIVVAPCDD--TGGADPPGQAMLSDFY------FSRFDDEVLLQEA 1232
F DP E FH ++ L +YL + +S L + V Q GT++ + +DD V+GF+TAL LK KE +Q V +++ +K + +++++L + VGL+++ERM+N P Q VP LH AL EDI WAIENE ++E R F+ D F+++A C + TG + Y F F+DE L QEA
Sbjct: 85 FSDPREAHFHSVKQFLL-AYLPPSQPFDVSGLANAIVGQVTAGTMVCVEGEDD-VYGFITALNLKIFEKETS-MQQVVQYVTKKCPNSDL-PKLQQILNT---KNVGLVLNERMVNLPYQLVPALHSALHEDIEWAIENEDTQELRNSFQMDYFLILATCSEEKTGSSGSTKSKKSKTTYEQTARFFHNFEDEFLEQEA 276
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2992.1 vs. uniprot
Match: A0A1Z5J744_FISSO (Protein BCP1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J744_FISSO) HSP 1 Score: 107 bits (267), Expect = 6.540e-22 Identity = 71/198 (35.86%), Postives = 106/198 (53.54%), Query Frame = 3
Query: 660 FCDPHERFFHGIRALLAHSYLQEAAGAGLSPLVDLAVAQGAVGTVLSTDADDDA-VFGFVTALPLKYLAKEHECVQAVTKFLLEKASKAGRGSEMEEVLGEGTQEKVGLLVSERMINCPMQAVPKLHEALVEDIAWAIENEISEEHREKFRFDRFIVVAPCDDTGGADPPGQAMLSDFYFSRFDDEVLLQEADFFFPM 1250
FCD E+FFHG+++LL +S A S LVDL ++ VGTV+ST+ D+D VFGF + L + ++ +Q + + L K + E+E VL T+ G L+ RM+N P++ V LH+ LV D+ WA+ N E R+ F F F+V+APC GG+ + FDDE+ A+F F +
Sbjct: 95 FCDMDEKFFHGVKSLLNNSSTIYQTHA--SSLVDLMISNVQVGTVVSTEGDEDGNVFGFASVLNVTTY-QDAPAIQHLKEECLSNCPKDHK-EELEVVLSGKTKRPAGFLIHGRMVNLPLEIVDVLHDQLVMDMDWAVNN-AEPEDRKSFDFGAFVVLAPCQKEGGS----------MVYRYFDDEIFADRAEFVFTL 277 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1516.2992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1516.2992.1 >prot_E-siliculosus-1a_F_contig1516.2992.1 ID=prot_E-siliculosus-1a_F_contig1516.2992.1|Name=mRNA_E-siliculosus-1a_F_contig1516.2992.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=451bp MAKRGRGGEGGPEAGDKKKKKRQTQQNGSESQQQRLGDPSSSPADAQTGAback to top mRNA from alignment at E-siliculosus-1a_F_contig1516:7284..11997- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1516.2992.1 ID=mRNA_E-siliculosus-1a_F_contig1516.2992.1|Name=mRNA_E-siliculosus-1a_F_contig1516.2992.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4714bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1516:7284..11997- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1516:7284..11997- >mRNA_E-siliculosus-1a_F_contig1516.2992.1 ID=mRNA_E-siliculosus-1a_F_contig1516.2992.1|Name=mRNA_E-siliculosus-1a_F_contig1516.2992.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2706bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1516:7284..11997- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |