mRNA_E-siliculosus-1a_F_contig1039.298.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1039.298.1
Unique NamemRNA_E-siliculosus-1a_F_contig1039.298.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: D7FT33_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT33_ECTSI)

HSP 1 Score: 501 bits (1289), Expect = 2.310e-173
Identity = 285/299 (95.32%), Postives = 289/299 (96.66%), Query Frame = 1
Query:    1 MPNKITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQSWAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRAEKEAARLGSQEKHDGNNNSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGEGEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQVR 897
            MPNKITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAM G RHLKDLYMMGNPCQSWAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRK AEKEAA+L SQEKHDGNNNSDNEHSRGGGV AD HPTAPAK+DGA D+PGHDARPSGTD+SC GKGE EELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQ R
Sbjct:    1 MPNKITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMEGNRHLKDLYMMGNPCQSWAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKLAEKEAAKLESQEKHDGNNNSDNEHSRGGGVDADDHPTAPAKSDGATDQPGHDARPSGTDKSCDGKGEEEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQTR 299          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: A0A835Z7F5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7F5_9STRA)

HSP 1 Score: 236 bits (601), Expect = 7.520e-72
Identity = 146/293 (49.83%), Postives = 174/293 (59.39%), Query Frame = 1
Query:   13 ITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQS-WAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRAEKEAARLGSQEKHDGNNNSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGEGEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELE 888
            I+++L+RRRAEHNEGLIHTLEE+SLHQEE+E I+D LG NCR LKILYLQNNII KM+NLHH+KELEYLNLAL                KLDLTVNF+D+D+L+ S+  +    +LKDLYMMGNP Q+ W GF AY    L QLERLDG+EITR+ RI AQQ+LPAL+ E    AQ++ Q                                       TA                              EE T HTPE RT IYRE+AEQKREK+ERQ+ENLPK+R+FE E
Sbjct:    5 ISLELVRRRAEHNEGLIHTLEEISLHQEEIERINDVLGKNCRHLKILYLQNNIINKMENLHHLKELEYLNLALNNITIIEGLGSCEMLNKLDLTVNFIDLDKLQESIEHLASCPNLKDLYMMGNPAQANWEGFAAYVTGILSQLERLDGREITRSMRITAQQQLPALKAEYQ--AQKLEQ---------------------------------------TA------------------------------EETTPHTPEVRTQIYRELAEQKREKDERQRENLPKERDFEQE 226          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: A0A7S3HTQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTQ6_9STRA)

HSP 1 Score: 224 bits (571), Expect = 4.250e-66
Identity = 142/294 (48.30%), Postives = 185/294 (62.93%), Query Frame = 1
Query:   13 ITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQ-SWAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRAEKEAARLGSQEKHDGNNNSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGEGEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQ 891
            IT DL+R+RAEHNEG+I TLEE+SLHQEELESI++ LG  CR+LKILYLQNNII KM+NL HMK+L YLNLAL                KLDLTVNF+D+DEL++S+  +  + +L DLYMMGNP + +W  F+ Y IA+LPQL+ LDG EITR+ +I+A+Q+LPAL  E+  LA  VR  KRA+   A +  Q K                        AP+    A      D      +E+ G   + +E+T +TPE R  IY+E+A+QK+EKE+R   N PK RN+E EQ
Sbjct:   28 ITRDLLRKRAEHNEGMISTLEEISLHQEELESINEVLGMTCRKLKILYLQNNIISKMENLFHMKDLVYLNLALNNVTKIEGLHNCEFLGKLDLTVNFIDLDELKDSIDHLQSRTNLHDLYMMGNPSEHNWPNFKHYVIAKLPQLQNLDGTEITRSMQIQARQKLPALEIELEKLASAVRTEKRAK---AIITEQAK-----------------------PAPSVTTYANGVTIEDV----DEEAEGSNDQSQEMTDNTPETRVRIYQELAQQKKEKEDRANVNAPKKRNYEKEQ 291          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: A0A7S4E455_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E455_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.880e-61
Identity = 113/189 (59.79%), Postives = 143/189 (75.66%), Query Frame = 1
Query:    7 NKITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQS-WAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRAEKE 570
            N++T+ LIR+RAEHNEG+I TLEEL+LHQEEL +I+  LG  CR+LKILYLQNNII K+Q+LHH+K+LEYLN+AL                KLDLTVNFVD+DELE+S+  +  + HLKDLYMMGNPC++ W GF+ Y IARLPQL+ LDG+ ITR+ +I A+Q+LP L  E+  LAQE R  K A+KE
Sbjct:   25 NRMTLKLIRKRAEHNEGIISTLEELTLHQEELVAIEPCLGTTCRKLKILYLQNNIISKIQHLHHLKDLEYLNMALNNVSKIEGLDKCEFLNKLDLTVNFVDVDELESSMDHLADREHLKDLYMMGNPCEANWPGFKNYVIARLPQLQFLDGEAITRSMQIIAKQQLPKLAVELRSLAQEKRDEK-AQKE 212          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: A0A7S2CFI3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CFI3_9STRA)

HSP 1 Score: 189 bits (481), Expect = 9.620e-57
Identity = 114/172 (66.28%), Postives = 135/172 (78.49%), Query Frame = 1
Query:    1 MPNKITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQ-SW-AGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPAL 510
            MP+ +T  LIR+RAEHNEG+I +LEE+SLHQEELE I + LG  CR+LKI+YLQNNII KM+NLHH+KELEYLNLAL   XXXXXXXXXXXX KLDLTVNF+D D LE S+  +V ++HL++LYMMGNP Q  W  GF+ Y I RLPQLE LDG  IT++ RI A Q  P L
Sbjct:    1 MPH-LTRALIRKRAEHNEGIISSLEEISLHQEELEGIREVLGTTCRKLKIVYLQNNIIPKMENLHHLKELEYLNLALNNIXXXXXXXXXXXXNKLDLTVNFIDFDHLEESIDQLVSRQHLRELYMMGNPSQMDWDPGFKDYVIHRLPQLESLDGTHITKSMRIVAAQAYPRL 171          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: F0YAK5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAK5_AURAN)

HSP 1 Score: 186 bits (472), Expect = 2.760e-53
Identity = 145/288 (50.35%), Postives = 174/288 (60.42%), Query Frame = 1
Query:   13 ITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQ-SWAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRAEKEAARLGSQEKHDGNNNSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGEGEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDR 873
            IT +LIR+RAEHNEG+I TLEEL+LHQEEL +I   LG  CR+LKILYLQNNII KM+NLHHMK+LEYLNLA XXXXXXXXXXXXXXXX    TVNFVD+D LE S+  +  + HL+DLYMMGNP Q  W GF+ Y +ARLPQL+ +DG+ ITR  RI A+Q+LP L  E+  LA      K AEK+A                                AP            D R    DE+            +TPE RT +Y E+AEQK EK+ +Q    PK+R
Sbjct:    1 ITRELIRKRAEHNEGVISTLEELTLHQEELLAIAPCLGTICRKLKILYLQNNIISKMENLHHMKDLEYLNLAXXXXXXXXXXXXXXXXXXXXXTVNFVDVDALEESMDNLASRIHLRDLYMMGNPAQVDWPGFKNYVVARLPQLKFVDGEPITRGVRIVAEQQLPKLSVELRGLAAA----KAAEKKAK-------------------------------APV-----------DYRDLDVDEAA----------PYTPEVRTKMYEEVAEQKAEKDHKQNAMKPKER 232          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: A0A662WUB0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUB0_9STRA)

HSP 1 Score: 190 bits (482), Expect = 4.600e-53
Identity = 136/311 (43.73%), Postives = 177/311 (56.91%), Query Frame = 1
Query:   10 KITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQS-W-AGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRA-----------EKEAARLGSQEKHDGNN-----NSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGEGEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELE 888
            +IT++L+R+RAEHNEG+I TLEE+SLHQEELE I+  +G  CR+L+ILYLQNNII KM++L HMKEL YLNLAL                KLDLTVNFVD D LE+S+  +   +HL++LYM+GNPCQS W  GF  Y IA LPQL+ LDGKEI R+DRIKA Q     ++ +   A++V  RK             E EA  + S E  D ++       D++HS+              K    A +                     E   +TP  R  +Y EMAEQK E+E R++EN P++RN E E
Sbjct:    3 RITVELLRKRAEHNEGIISTLEEISLHQEELEKIE-VIGTLCRKLQILYLQNNIIEKMEDLTHMKELRYLNLALNNISKIEGLQCCEFLNKLDLTVNFVDFDTLEDSIDHLKPLQHLRELYMLGNPCQSDWETGFREYVIASLPQLQLLDGKEIQRSDRIKALQVFRVRQQYVRKEAKKVLDRKXXXXXXXXXXXXXEDEAIEIVSGEATDISSVEVVEEVDSQHSKN------------KKKSVMASK---------------------EKVPYTPHTRREMYMEMAEQKEEEEARRRENQPRERNTEAE 279          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: A0A6A3GCM2_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GCM2_9STRA)

HSP 1 Score: 183 bits (465), Expect = 7.990e-53
Identity = 127/290 (43.79%), Postives = 165/290 (56.90%), Query Frame = 1
Query:   34 RRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQS-W-AGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRAEKEAARLGSQEKHDGNNNSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGE---GEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELE 888
            +RAEHNEG+I TLEE+SLHQEELE I+  +G  CR+L+ILYLQNNII KM++L HMKEL YLN+AL                KLDLTVNFVD D LE S+  +   RHL++LYM+GNPCQ+ W +GF  + +A LPQLE LDGKEI R+DRIKA Q     +K +   A++VR +K  E++                                  P + D   +  G +A     ++    K       E   +TP  R  +Y EMAEQK E+E R++EN PK+RN E E
Sbjct:    1 KRAEHNEGIISTLEEISLHQEELEKIE-VIGTLCRKLRILYLQNNIIDKMEDLTHMKELRYLNVALNNIRKIEGLQSCEFLNKLDLTVNFVDFDTLEESIDHLKPLRHLRELYMLGNPCQANWESGFREFVVASLPQLEILDGKEIHRSDRIKALQVFRDRQKFVRSEARKVRAKKELERKEEN-------------------------------PQEEDEVLEVVGGEATDISEEQVEKKKKSVMASTEKVPYTPHTRREMYLEMAEQKEEEEARRRENQPKERNTEAE 258          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: A0A3R7GRH2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GRH2_9STRA)

HSP 1 Score: 186 bits (473), Expect = 3.350e-52
Identity = 150/306 (49.02%), Postives = 190/306 (62.09%), Query Frame = 1
Query:   10 KITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQS-W-AGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRAEKEAARLGSQEKHDGNNNSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGEGEELTK-----------HTPEARTAIYREMAEQKREKEERQKENLPKDRNFELE 888
            +IT++L+R+RAEHNEG+I TLEE+SLHQEELE I+  +G  CR+L+ILYLQNNII K+++L HMKEL YLNLA XXXXXXXXXXXXXXXX  DLTVNFVD D LE S+  +   +HL++LYM+GNPCQS W  GF  Y IA L QLE LDGKEI R+DRIKA Q     +K +         R+ A+K  A+   + + +   NS                   A +DG  +  G +A    TD S     +  E TK           +TP  R  +Y EMAEQK E+E R++EN P++RN E E
Sbjct:    3 RITVELLRKRAEHNEGIISTLEEISLHQEELERIE-VIGTLCRKLQILYLQNNIIEKIEDLAHMKELRYLNLAXXXXXXXXXXXXXXXXXXXDLTVNFVDFDTLEESIDHLKPLQHLRELYMLGNPCQSNWETGFREYVIASLAQLELLDGKEIQRSDRIKALQVFRERQKYV---------RREAKKILAKNALEREQEVTKNS-------------------ADDDGVIEVVGGEA----TDVSSKDTAKSTEKTKPSVMASTEKVPYTPHTRREMYLEMAEQKEEEEARRRENQPRERNTEAE 275          
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: W7TJA0_9STRA (Leucine-rich repeat containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJA0_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.640e-50
Identity = 129/321 (40.19%), Postives = 168/321 (52.34%), Query Frame = 1
Query:   10 KITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQSWAGFE--------------------AYTIA-RLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVR-----QRKRAEKEAARLGSQEKHDGNNNSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGEGEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQV 894
            +IT DL+R+RAEHNEG++ TLEEL+LHQEELE I+D LG  CR +KILYLQNN++ +++NLHH+K LEYLN+AL                KLDLTVNF+D D LE S++ +   RHL+DLY +GNP Q+   FE                     Y IA RLPQL+ LDG+EITRT R+ A +  P L   + +LA   R     + K+A K+     S                          + P +NDG                      +G   T H PE R AIY E+A QK+EK ERQ+ + PK R+   EQ 
Sbjct:    3 EITRDLLRKRAEHNEGILTTLEELALHQEELEGINDILGKTCREIKILYLQNNLLPRIENLHHLKCLEYLNVALNNISVVEGLGSCEFLRKLDLTVNFIDFDALEASITHLASLRHLRDLYFLGNPAQTRPWFEDEEVKCEAVVDKMLDKKQAFTYYIAHRLPQLQCLDGQEITRTTRLLAARVFPTLETRLRVLATRTRCEKEGKAKKAIKDTESCAS--------------------------SGPVENDGT---------------------DGSMPTSHDPETRRAIYLEIAAQKKEKLERQRADGPKKRDTAREQA 276          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT33_ECTSI2.310e-17395.32Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835Z7F5_9STRA7.520e-7249.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3HTQ6_9STRA4.250e-6648.30Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S4E455_9STRA1.880e-6159.79Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2CFI3_9STRA9.620e-5766.28Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
F0YAK5_AURAN2.760e-5350.35Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A662WUB0_9STRA4.600e-5343.73Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A6A3GCM2_9STRA7.990e-5343.79Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
A0A3R7GRH2_9STRA3.350e-5249.02Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
W7TJA0_9STRA2.640e-5040.19Leucine-rich repeat containing protein n=2 Tax=Mon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1039contigE-siliculosus-1a_F_contig1039:115..3176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size897
Model size897
Exons5
Ec32 orthologEc-04_002660.3
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EggNOG OGsCOG4886@1,KOG0531@2759
EggNOG free text desc.axoneme assembly
KEGG koko:K19753
Seed eggNOG ortholog2880.D7FT33
Seed ortholog evalue1.1e-140
Seed ortholog score506.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1039.298.1prot_E-siliculosus-1a_F_contig1039.298.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1039 115..3176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.8465393-CDS-E-siliculosus-1a_F_contig1039:114..4711622927540.8465393-CDS-E-siliculosus-1a_F_contig1039:114..471Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 115..471 -
1696318576.031265-CDS-E-siliculosus-1a_F_contig1039:114..4711696318576.031265-CDS-E-siliculosus-1a_F_contig1039:114..471Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 115..471 -
1622927540.861845-CDS-E-siliculosus-1a_F_contig1039:955..11021622927540.861845-CDS-E-siliculosus-1a_F_contig1039:955..1102Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 956..1102 -
1696318576.0404952-CDS-E-siliculosus-1a_F_contig1039:955..11021696318576.0404952-CDS-E-siliculosus-1a_F_contig1039:955..1102Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 956..1102 -
1622927540.8762374-CDS-E-siliculosus-1a_F_contig1039:1517..16641622927540.8762374-CDS-E-siliculosus-1a_F_contig1039:1517..1664Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 1518..1664 -
1696318576.053961-CDS-E-siliculosus-1a_F_contig1039:1517..16641696318576.053961-CDS-E-siliculosus-1a_F_contig1039:1517..1664Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 1518..1664 -
1622927540.8889096-CDS-E-siliculosus-1a_F_contig1039:1907..20601622927540.8889096-CDS-E-siliculosus-1a_F_contig1039:1907..2060Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 1908..2060 -
1696318576.061784-CDS-E-siliculosus-1a_F_contig1039:1907..20601696318576.061784-CDS-E-siliculosus-1a_F_contig1039:1907..2060Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 1908..2060 -
1622927540.8995714-CDS-E-siliculosus-1a_F_contig1039:3083..31761622927540.8995714-CDS-E-siliculosus-1a_F_contig1039:3083..3176Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 3084..3176 -
1696318576.073041-CDS-E-siliculosus-1a_F_contig1039:3083..31761696318576.073041-CDS-E-siliculosus-1a_F_contig1039:3083..3176Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1039 3084..3176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1039.298.1

>prot_E-siliculosus-1a_F_contig1039.298.1 ID=prot_E-siliculosus-1a_F_contig1039.298.1|Name=mRNA_E-siliculosus-1a_F_contig1039.298.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=299bp
MPNKITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKI
LYLQNNIIGKMQNLHHMKELEYLNLALNNISKVEGLQSCEFLNKLDLTVN
FVDMDELENSVSAMVGKRHLKDLYMMGNPCQSWAGFEAYTIARLPQLERL
DGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRAEKEAARLGSQEKH
DGNNNSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGG
KGEGEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQVR
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mRNA from alignment at E-siliculosus-1a_F_contig1039:115..3176-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1039.298.1 ID=mRNA_E-siliculosus-1a_F_contig1039.298.1|Name=mRNA_E-siliculosus-1a_F_contig1039.298.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3062bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:115..3176- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGAACAAGATCACGATCGACCTTATCCGCCGCAGGGCAGAGCACAA TGAAGGTCTCATCCACACCCTCGAGGAGCTCTCCCTGCACCAGGTCAGTG GCCAGCGAAGGCCATCGCAGCGTTTCAGACAAAAAATAGAGAGCACTGGG TCTCAAAGAAAAATTTCCCGTGGGTAAAGTGTTGCAGCTAACCGCTCGCT GGACACAAAAAGAGTCCGCACCGGACCTACAAGCAGTAACCTGCCTCTGT GTATCTACTCTGCACAAATAGACGATCGGAGCAGGCATTAACATGCCTTG CAAAAATACACTGGCCCGGTATCTCCTGCGTCTACTATGCTTTCATCAGT GGTTTCGTCGCCCTGTCTGCTCGCCGAGTTTGATAAGAAAGAAGACGGGT GCAGCGAAATGTGAATGTGGAGGCGGACAGAGAAAGGGGGCGGGTAAAAG TTCAAGCATTCAAACCGCGAACGCATCAGCAGCACCATCAGTAAGTATCA TGAGAAGCAGCAGTGATGTCGATACCAGCGGGAGAACACGTACACAATCA AGGGTTTGGCAAGGAAAAGCACCTCAAAAAGGGTGTTGCGTGCGGTCCTC GCACGAGGAACACATTGCCTACCTCCCGTATGTTGTATGATACATACAGT AGTTACACACACCCCGGGTTCCCTGGTGGAGTCAACACGCCCATATCAGG ACTTGCTGCTGTTGCTATGCCTTGGATGGCCAACGTCAATTGTTCCGTTT TCACTCTCGAGGTGCTACAGCAGCAGCGGCTTATAGGCTAGGCTAAACTC TCAGCAAGTCGCCTCCACGGCAAGGCCTGTGAATAGCACCAGTGTACTAC AGTAGCGGGTCAACCTGATCCCTGTTGTGGGCGACGCGCTTCAAGGAGGG CAACGTGCACCATAAGTACGTTTTAGATAATTTTACACTTGTAATTCAAT AGAAGTTCTATCCGTTCGAGATATGACCACAGTCGTGGAAGACGTGGTGA AGCCTTACAGGTGAGTGTGCTAGACTAGACACCGTTTGGCAGCATAGTAT CGATTGCTGTGTTTCCTCGAGCCACACTTTCGCTTCGCAACAACACTCGT TTTCGACCGGCTGCAGGAAGAGCTGGAATCAATCGACGACACCCTCGGCT GCAACTGCCGCCGCCTCAAGATCCTCTACCTCCAGAACAACATCATCGGG AAGATGCAGAACCTGCACCACATGAAGGAGCTAGAGTACCTCAACCTCGC CCTTAACAACATCTCCAAGGTGTGCGTCTGTGGATGTGTGATGCTATGAC ACCAACGGTAGTGCAGAATGAGAGTTGATTCCCTACACACATTAATGCTC CGAACAGATGTCAAGAGCACCACCAGGATAAATCAGACAGTGTCAACCCT TTTGCCCAAGAAGGCTGACACCAAGTAGAAGAGAATGTGCTTCCTTTTTT TTTTTGTCTTGCTTCTTTCGCTTGTTGACTCTCGGGACTCGACCCTGTCC TGCGGCAAGCAGGTTGAAGGCCTGCAGTCTTGCGAGTTTCTAAACAAGCT GGACCTAACGGTCAACTTCGTCGACATGGACGAGCTGGAGAACAGCGTGT CCGCCATGGTGGGGAAACGGCATCTCAAAGACCTCTACATGATGGGCAAC CCGTGTCAGGTGGGGGGCTAGATAGCCTCGCGACTTCACTCGTCGAGCAC CCCATTAATAATGTCGTCGAGCACCCCATGAATAATGGATGGAAGATTCG TCGCCAACGACCCTAACGGACTACCACTGCGTGCAAATTCTTATTGCTCA GTGAGAGAAGTTGGCTCGACGCTCGTTCCCCCCATGCTCCAAAACTCAAT AGACCATCACGGCGTACAAATTCTTGTTGTTCTACGAGAGAACTTGACTC GGTTCTCGCCTGGCAGCTCCTTCCGTCCAAGGATCTGCTGCTGGCATATG TACGTTGCCACTCATTCCCCCATGCTCCCGCGCTCTCCTGTCTGTGCAAC AAACGCGGCTCAAAAGAGTGTACCCCCCCCCCCCCCTCCCATTGGGCTAA CGTGATGGTGTCGTAATTCTTCAGTCATGGGCTGGTTTCGAGGCGTACAC GATAGCTCGGCTGCCTCAGTTGGAGCGCCTGGACGGCAAGGAGATCACCC GAACGGACCGAATAAAGGCGCAGCAGCGGCTGCCTGCCCTCCGCAAGGAG ATCCCGTTGTTGGCACAGGAGGTGACAAGTTTCCTAGCAGCAATGTGCCG TTCTACGTGAAGGGGAGAGTGATTGGCGCAGGAGGTGCCAACCTTTGTAG CAGCAATGTGCCGGGTTATTCAGGGAGTGAGGAGGTTGGCGCAGGGGGTG GCAAGTTTTGGTAGCAAAAATGTGCCGTGTTTTACGGGAATGGGGGGAGG GGTAAGAACTGTTGAGGTGCAGATACAAAGTCGTGGTGTATCGCTCTCTC CGTGTTTTTCGTCGGTCCCTTTTTTCTTTTTTTCTGTATCCTCTGGCTGC TGCTGTGTTGCACTCTCGCATTCAACCATGTGGCACCGCTCAACAAACGT CCCACAACCACGCGTGCCGCACCCGCCTATTTCAACACGGCTACACAAAT GTCGTTCGTAGACACATGCTTCCGGGCGAGACAAATTTCAATATCGGGGT GGTACGGGTAACGGAAAAACAGCCTCCTCCCCCCTCCCCCTGTCTCTCAA AAAAGGTGAGACAACGCAAGCGCGCCGAGAAGGAGGCGGCTAGGTTGGGA TCTCAGGAAAAGCACGACGGAAACAACAACAGCGACAACGAGCACAGCCG GGGGGGGGGCGTGGGTGCCGACGGCCACCCCACAGCCCCTGCGAAGAACG ACGGCGCCGCAGACCGACCAGGACACGATGCTCGGCCTAGCGGCACCGAC GAGTCCTGTGGCGGGAAAGGGGAGGGAGAGGAACTCACGAAGCACACGCC AGAGGCCCGCACGGCGATATACCGCGAGATGGCCGAGCAAAAGAGAGAGA AAGAAGAACGGCAGAAGGAAAACTTGCCCAAGGACCGCAACTTTGAGCTC GAGCAGGTGAGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1039:115..3176-

>mRNA_E-siliculosus-1a_F_contig1039.298.1 ID=mRNA_E-siliculosus-1a_F_contig1039.298.1|Name=mRNA_E-siliculosus-1a_F_contig1039.298.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1794bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:115..3176- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGAACAAGATCACGATCGACCTTATCCGCCGCAGGGCAGAGCACAA
TGAAGGTCTCATCCACACCCTCGAGGAGCTCTCCCTGCACCAGATGCCGA
ACAAGATCACGATCGACCTTATCCGCCGCAGGGCAGAGCACAATGAAGGT
CTCATCCACACCCTCGAGGAGCTCTCCCTGCACCAGGAAGAGCTGGAATC
AATCGACGACACCCTCGGCTGCAACTGCCGCCGCCTCAAGATCCTCTACC
TCCAGAACAACATCATCGGGAAGATGCAGAACCTGCACCACATGAAGGAG
CTAGAGTACCTCAACCTCGCCCTTAACAACATCTCCAAGGAAGAGCTGGA
ATCAATCGACGACACCCTCGGCTGCAACTGCCGCCGCCTCAAGATCCTCT
ACCTCCAGAACAACATCATCGGGAAGATGCAGAACCTGCACCACATGAAG
GAGCTAGAGTACCTCAACCTCGCCCTTAACAACATCTCCAAGGTTGAAGG
CCTGCAGTCTTGCGAGTTTCTAAACAAGCTGGACCTAACGGTCAACTTCG
TCGACATGGACGAGCTGGAGAACAGCGTGTCCGCCATGGTGGGGAAACGG
CATCTCAAAGACCTCTACATGATGGGCAACCCGTGTCAGGTTGAAGGCCT
GCAGTCTTGCGAGTTTCTAAACAAGCTGGACCTAACGGTCAACTTCGTCG
ACATGGACGAGCTGGAGAACAGCGTGTCCGCCATGGTGGGGAAACGGCAT
CTCAAAGACCTCTACATGATGGGCAACCCGTGTCAGTCATGGGCTGGTTT
CGAGGCGTACACGATAGCTCGGCTGCCTCAGTTGGAGCGCCTGGACGGCA
AGGAGATCACCCGAACGGACCGAATAAAGGCGCAGCAGCGGCTGCCTGCC
CTCCGCAAGGAGATCCCGTTGTTGGCACAGGAGTCATGGGCTGGTTTCGA
GGCGTACACGATAGCTCGGCTGCCTCAGTTGGAGCGCCTGGACGGCAAGG
AGATCACCCGAACGGACCGAATAAAGGCGCAGCAGCGGCTGCCTGCCCTC
CGCAAGGAGATCCCGTTGTTGGCACAGGAGGTGAGACAACGCAAGCGCGC
CGAGAAGGAGGCGGCTAGGTTGGGATCTCAGGAAAAGCACGACGGAAACA
ACAACAGCGACAACGAGCACAGCCGGGGGGGGGGCGTGGGTGCCGACGGC
CACCCCACAGCCCCTGCGAAGAACGACGGCGCCGCAGACCGACCAGGACA
CGATGCTCGGCCTAGCGGCACCGACGAGTCCTGTGGCGGGAAAGGGGAGG
GAGAGGAACTCACGAAGCACACGCCAGAGGCCCGCACGGCGATATACCGC
GAGATGGCCGAGCAAAAGAGAGAGAAAGAAGAACGGCAGAAGGAAAACTT
GCCCAAGGACCGCAACTTTGAGCTCGAGCAGGTGAGAGTGAGACAACGCA
AGCGCGCCGAGAAGGAGGCGGCTAGGTTGGGATCTCAGGAAAAGCACGAC
GGAAACAACAACAGCGACAACGAGCACAGCCGGGGGGGGGGCGTGGGTGC
CGACGGCCACCCCACAGCCCCTGCGAAGAACGACGGCGCCGCAGACCGAC
CAGGACACGATGCTCGGCCTAGCGGCACCGACGAGTCCTGTGGCGGGAAA
GGGGAGGGAGAGGAACTCACGAAGCACACGCCAGAGGCCCGCACGGCGAT
ATACCGCGAGATGGCCGAGCAAAAGAGAGAGAAAGAAGAACGGCAGAAGG
AAAACTTGCCCAAGGACCGCAACTTTGAGCTCGAGCAGGTGAGA
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