mRNA_E-siliculosus-1a_F_contig15101.2975.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: D8LG13_ECTSI (Vesicle transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG13_ECTSI) HSP 1 Score: 227 bits (579), Expect = 1.890e-74 Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 1
Query: 1 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGFWSGLRGGG 345
RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYA+VPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGFWSGLRGGG
Sbjct: 66 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYASVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGFWSGLRGGG 180
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: A0A835Z2J1_9STRA (Vesicle transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J1_9STRA) HSP 1 Score: 126 bits (317), Expect = 2.160e-34 Identity = 59/106 (55.66%), Postives = 79/106 (74.53%), Query Frame = 1
Query: 1 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAG 318
R+ +L+ GNP PFV+ +S+G+ ++IC+SFFL GPW QIKKMF P R VAT +Y+ TL T VAL+P +P R LL+ LVV QF+S++WY LSY+PFAR + AG
Sbjct: 84 RIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAP--RMPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAG 187
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: A0A7S3JV88_9STRA (Vesicle transport protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JV88_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.180e-21 Identity = 45/107 (42.06%), Postives = 77/107 (71.96%), Query Frame = 1
Query: 1 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRG---ILLLCLVVAQFLSYVWYTLSYVPFARRFM 312
R+ +L+ GNP PFV++++LG+ + I S FL+GP Q KKM++P R +ATS+YL T+ T+FVA Y +P G I+++C+ + Q+++ +WYT+S++P+AR ++
Sbjct: 59 RLVELVKGNPAPFVVFYTLGNVMAIIGSLFLSGPRAQCKKMWDPTRRIATSVYLLTIFFTIFVAF--YEGIPDDGRIGIIIMCIFI-QWIAMLWYTISFIPYARDYV 162
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: A0A7S4AIV8_9STRA (Vesicle transport protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AIV8_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 3.490e-19 Identity = 45/112 (40.18%), Postives = 74/112 (66.07%), Query Frame = 1
Query: 1 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGFWSGLR 336
R+ LL G+P P V+ ++G+A+ +C + FL+GP Q ++MF+ R +A++ YL +L T+ + L P+ P RG+LL L++ Q+++ WY LSY+PFAR F++ SG R
Sbjct: 109 RMRNLLMGDPVPLVVNVTMGNAIALCGTCFLSGPQAQYQRMFHVSRKMASAFYLGSLGFTMVLLLVPHF--PLRGLLLFLLMIGQYVAITWYCLSYIPFARDFVS---SGCR 215
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: A0A8J2SX58_9STRA (Vesicle transport protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX58_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 7.880e-19 Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 1 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRG---ILLLCLVVAQFLSYVWYTLSYVPFAR 303
R+ +LL G P+ FV+YF+ G+ I S FFL+GP KKM +P R +AT+ YL T+ T FV Y +P G I++LC+ + Q+++ +WYT+S++PFAR
Sbjct: 54 RLKELLHGEPKNFVIYFTFGNLCAIASCFFLSGPKSHCKKMIDPTRRIATAFYLITIFFTFFVVF--YEKIPDDGRVGIIILCVFI-QWIAMLWYTISFIPFAR 154
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: F0Y3C0_AURAN (Vesicle transport protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3C0_AURAN) HSP 1 Score: 82.0 bits (201), Expect = 1.280e-17 Identity = 42/107 (39.25%), Postives = 70/107 (65.42%), Query Frame = 1
Query: 1 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRG---ILLLCLVVAQFLSYVWYTLSYVPFARRFM 312
R+A L+ GNP PFV++++LG+ + I S FL+GP Q K M++ R VAT Y ++ T+F Y +P G I+++C+ V Q+++ +WYT+S++PFAR ++
Sbjct: 31 RLADLIKGNPTPFVVFYTLGNLMGIAGSLFLSGPKAQCKAMWDRTRIVATLFYFTSIIMTIFCCY--YHGIPDDGRVGIIIMCVFV-QWIAMIWYTISFIPFARDYV 134
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: A0A1Y1IA24_KLENI (Vesicle transport protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IA24_KLENI) HSP 1 Score: 82.4 bits (202), Expect = 1.750e-17 Identity = 43/104 (41.35%), Postives = 71/104 (68.27%), Query Frame = 1
Query: 4 VAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMA 315
++ L+ NP F + ++ G+ L++ S+ FL GP +Q+K MF+PVRAVAT +Y+ + TLF AL + + + ++C+VV +F + +WY+LSY+PFARR +A
Sbjct: 55 LSSLVWLNPVKFAITYTFGNLLSLGSTTFLVGPMRQLKMMFDPVRAVATIVYVVAIVLTLFCALYLHDIL----LTMICIVV-EFCAVIWYSLSYIPFARRMVA 153
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: A0A1Z5KRX6_FISSO (Vesicle transport protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRX6_FISSO) HSP 1 Score: 81.6 bits (200), Expect = 5.690e-17 Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 1
Query: 13 LLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGF 321
++ +P PFVL ++G+ + + SFFLTGP Q K M+ R +AT +YL +L TLFVA P G LL L++ Q++S WYTLSYVPFA + F
Sbjct: 78 VINHDPLPFVLNATIGNIIALAGSFFLTGPKAQWKNMWLEKRRIATGLYLGSLFLTLFVAFLPIPGP--EGFYLLLLMLCQYISITWYTLSYVPFAHDIIVSF 178
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: A0A7S2HIA8_9STRA (Vesicle transport protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HIA8_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.640e-16 Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = 1
Query: 1 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYA----TVPFRGILLLCLVVAQFLSYVWYTLSYVPFAR 303
R +L+ GNP PFV ++LG L++ S FL GP +Q +MF+P R A YL ++ TLF+ + + T G LL+ L+V Q + VWYTLSY+PFAR
Sbjct: 1 RFGRLIAGNPLPFVTTWTLGHILSLIGSTFLIGPQRQYTQMFHPSRFHAAIAYLISMFFTLFIVILCFVLNRPTGFILGFLLVLLMVIQSMCIVWYTLSYIPFAR 105
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: S4RKT0_PETMA (Vesicle transport protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RKT0_PETMA) HSP 1 Score: 78.2 bits (191), Expect = 7.060e-16 Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = 1
Query: 37 FVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVAL----SPYATVPFRGILLLCLVVAQFLSYVWYTLSYVPFAR 303
F +++SLG+ +CS+ FL GP KQ+K+MFNP RA+ATS+ L L TL A P A LL C V QFLS WY+LSY+P+AR
Sbjct: 65 FAVFYSLGNICALCSTCFLMGPLKQMKRMFNPTRAIATSVMLCCLVCTLCSAFWWKNKPLA-------LLFC--VLQFLSLTWYSLSYIPYAR 148 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig15101.2975.1 >prot_E-siliculosus-1a_F_contig15101.2975.1 ID=prot_E-siliculosus-1a_F_contig15101.2975.1|Name=mRNA_E-siliculosus-1a_F_contig15101.2975.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=116bp RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATback to top mRNA from alignment at E-siliculosus-1a_F_contig15101:134..481+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig15101.2975.1 ID=mRNA_E-siliculosus-1a_F_contig15101.2975.1|Name=mRNA_E-siliculosus-1a_F_contig15101.2975.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=348bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15101:134..481+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15101:134..481+ >mRNA_E-siliculosus-1a_F_contig15101.2975.1 ID=mRNA_E-siliculosus-1a_F_contig15101.2975.1|Name=mRNA_E-siliculosus-1a_F_contig15101.2975.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15101:134..481+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |