mRNA_E-siliculosus-1a_F_contig15101.2975.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15101.2975.1
Unique NamemRNA_E-siliculosus-1a_F_contig15101.2975.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: D8LG13_ECTSI (Vesicle transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG13_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 1.890e-74
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 1
Query:    1 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGFWSGLRGGG 345
            RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYA+VPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGFWSGLRGGG
Sbjct:   66 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYASVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGFWSGLRGGG 180          
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: A0A835Z2J1_9STRA (Vesicle transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J1_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.160e-34
Identity = 59/106 (55.66%), Postives = 79/106 (74.53%), Query Frame = 1
Query:    1 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAG 318
            R+ +L+ GNP PFV+ +S+G+ ++IC+SFFL GPW QIKKMF P R VAT +Y+ TL  T  VAL+P   +P R  LL+ LVV QF+S++WY LSY+PFAR + AG
Sbjct:   84 RIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAP--RMPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAG 187          
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: A0A7S3JV88_9STRA (Vesicle transport protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JV88_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.180e-21
Identity = 45/107 (42.06%), Postives = 77/107 (71.96%), Query Frame = 1
Query:    1 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRG---ILLLCLVVAQFLSYVWYTLSYVPFARRFM 312
            R+ +L+ GNP PFV++++LG+ + I  S FL+GP  Q KKM++P R +ATS+YL T+  T+FVA   Y  +P  G   I+++C+ + Q+++ +WYT+S++P+AR ++
Sbjct:   59 RLVELVKGNPAPFVVFYTLGNVMAIIGSLFLSGPRAQCKKMWDPTRRIATSVYLLTIFFTIFVAF--YEGIPDDGRIGIIIMCIFI-QWIAMLWYTISFIPYARDYV 162          
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: A0A7S4AIV8_9STRA (Vesicle transport protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AIV8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.490e-19
Identity = 45/112 (40.18%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGFWSGLR 336
            R+  LL G+P P V+  ++G+A+ +C + FL+GP  Q ++MF+  R +A++ YL +L  T+ + L P+   P RG+LL  L++ Q+++  WY LSY+PFAR F++   SG R
Sbjct:  109 RMRNLLMGDPVPLVVNVTMGNAIALCGTCFLSGPQAQYQRMFHVSRKMASAFYLGSLGFTMVLLLVPHF--PLRGLLLFLLMIGQYVAITWYCLSYIPFARDFVS---SGCR 215          
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: A0A8J2SX58_9STRA (Vesicle transport protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX58_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.880e-19
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRG---ILLLCLVVAQFLSYVWYTLSYVPFAR 303
            R+ +LL G P+ FV+YF+ G+   I S FFL+GP    KKM +P R +AT+ YL T+  T FV    Y  +P  G   I++LC+ + Q+++ +WYT+S++PFAR
Sbjct:   54 RLKELLHGEPKNFVIYFTFGNLCAIASCFFLSGPKSHCKKMIDPTRRIATAFYLITIFFTFFVVF--YEKIPDDGRVGIIILCVFI-QWIAMLWYTISFIPFAR 154          
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: F0Y3C0_AURAN (Vesicle transport protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3C0_AURAN)

HSP 1 Score: 82.0 bits (201), Expect = 1.280e-17
Identity = 42/107 (39.25%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    1 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRG---ILLLCLVVAQFLSYVWYTLSYVPFARRFM 312
            R+A L+ GNP PFV++++LG+ + I  S FL+GP  Q K M++  R VAT  Y  ++  T+F     Y  +P  G   I+++C+ V Q+++ +WYT+S++PFAR ++
Sbjct:   31 RLADLIKGNPTPFVVFYTLGNLMGIAGSLFLSGPKAQCKAMWDRTRIVATLFYFTSIIMTIFCCY--YHGIPDDGRVGIIIMCVFV-QWIAMIWYTISFIPFARDYV 134          
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: A0A1Y1IA24_KLENI (Vesicle transport protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IA24_KLENI)

HSP 1 Score: 82.4 bits (202), Expect = 1.750e-17
Identity = 43/104 (41.35%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    4 VAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMA 315
            ++ L+  NP  F + ++ G+ L++ S+ FL GP +Q+K MF+PVRAVAT +Y+  +  TLF AL  +  +    + ++C+VV +F + +WY+LSY+PFARR +A
Sbjct:   55 LSSLVWLNPVKFAITYTFGNLLSLGSTTFLVGPMRQLKMMFDPVRAVATIVYVVAIVLTLFCALYLHDIL----LTMICIVV-EFCAVIWYSLSYIPFARRMVA 153          
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: A0A1Z5KRX6_FISSO (Vesicle transport protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRX6_FISSO)

HSP 1 Score: 81.6 bits (200), Expect = 5.690e-17
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   13 LLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYATVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGF 321
            ++  +P PFVL  ++G+ + +  SFFLTGP  Q K M+   R +AT +YL +L  TLFVA  P       G  LL L++ Q++S  WYTLSYVPFA   +  F
Sbjct:   78 VINHDPLPFVLNATIGNIIALAGSFFLTGPKAQWKNMWLEKRRIATGLYLGSLFLTLFVAFLPIPGP--EGFYLLLLMLCQYISITWYTLSYVPFAHDIIVSF 178          
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: A0A7S2HIA8_9STRA (Vesicle transport protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HIA8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.640e-16
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYA----TVPFRGILLLCLVVAQFLSYVWYTLSYVPFAR 303
            R  +L+ GNP PFV  ++LG  L++  S FL GP +Q  +MF+P R  A   YL ++  TLF+ +  +     T    G LL+ L+V Q +  VWYTLSY+PFAR
Sbjct:    1 RFGRLIAGNPLPFVTTWTLGHILSLIGSTFLIGPQRQYTQMFHPSRFHAAIAYLISMFFTLFIVILCFVLNRPTGFILGFLLVLLMVIQSMCIVWYTLSYIPFAR 105          
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Match: S4RKT0_PETMA (Vesicle transport protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RKT0_PETMA)

HSP 1 Score: 78.2 bits (191), Expect = 7.060e-16
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   37 FVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVAL----SPYATVPFRGILLLCLVVAQFLSYVWYTLSYVPFAR 303
            F +++SLG+   +CS+ FL GP KQ+K+MFNP RA+ATS+ L  L  TL  A      P A       LL C  V QFLS  WY+LSY+P+AR
Sbjct:   65 FAVFYSLGNICALCSTCFLMGPLKQMKRMFNPTRAIATSVMLCCLVCTLCSAFWWKNKPLA-------LLFC--VLQFLSLTWYSLSYIPYAR 148          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15101.2975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG13_ECTSI1.890e-7499.13Vesicle transport protein n=2 Tax=Ectocarpus TaxID... [more]
A0A835Z2J1_9STRA2.160e-3455.66Vesicle transport protein n=1 Tax=Tribonema minus ... [more]
A0A7S3JV88_9STRA1.180e-2142.06Vesicle transport protein n=1 Tax=Aureoumbra lagun... [more]
A0A7S4AIV8_9STRA3.490e-1940.18Vesicle transport protein n=1 Tax=Pseudo-nitzschia... [more]
A0A8J2SX58_9STRA7.880e-1943.27Vesicle transport protein n=1 Tax=Pelagomonas calc... [more]
F0Y3C0_AURAN1.280e-1739.25Vesicle transport protein (Fragment) n=1 Tax=Aureo... [more]
A0A1Y1IA24_KLENI1.750e-1741.35Vesicle transport protein n=1 Tax=Klebsormidium ni... [more]
A0A1Z5KRX6_FISSO5.690e-1743.69Vesicle transport protein n=1 Tax=Fistulifera sola... [more]
A0A7S2HIA8_9STRA1.640e-1642.86Vesicle transport protein (Fragment) n=1 Tax=Helic... [more]
S4RKT0_PETMA7.060e-1648.39Vesicle transport protein n=1 Tax=Petromyzon marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15101contigE-siliculosus-1a_F_contig15101:134..481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size348
Model size348
Exons1
Ec32 orthologEc-21_004990.1
Ec32 ortholog descriptionVesicle transport protein, Got1/SFT2-like
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGsCOG5102@1,KOG2887@2759
EggNOG free text desc.vesicle-mediated transport
Seed eggNOG ortholog2880.D8LG13
Seed ortholog evalue1.7e-57
Seed ortholog score228.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928023.0913124-CDS-E-siliculosus-1a_F_contig15101:133..4811622928023.0913124-CDS-E-siliculosus-1a_F_contig15101:133..481Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15101 134..481 +
1696318776.4413157-CDS-E-siliculosus-1a_F_contig15101:133..4811696318776.4413157-CDS-E-siliculosus-1a_F_contig15101:133..481Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15101 134..481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15101.2975.1prot_E-siliculosus-1a_F_contig15101.2975.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15101 134..481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15101.2975.1

>prot_E-siliculosus-1a_F_contig15101.2975.1 ID=prot_E-siliculosus-1a_F_contig15101.2975.1|Name=mRNA_E-siliculosus-1a_F_contig15101.2975.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=116bp
RVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVAT
SIYLATLSATLFVALSPYATVPFRGILLLCLVVAQFLSYVWYTLSYVPFA
RRFMAGFWSGLRGGG*
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mRNA from alignment at E-siliculosus-1a_F_contig15101:134..481+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15101.2975.1 ID=mRNA_E-siliculosus-1a_F_contig15101.2975.1|Name=mRNA_E-siliculosus-1a_F_contig15101.2975.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=348bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15101:134..481+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGTGGCGCAGCTGCTCACAGGGAACCCGCGGCCGTTCGTCCTCTATTT CTCGCTGGGAAGCGCGCTGAACATCTGCAGCTCCTTTTTTCTCACGGGCC CGTGGAAACAGATCAAGAAAATGTTCAATCCCGTGAGAGCCGTGGCCACC AGCATCTACCTGGCCACCCTTTCCGCGACGCTGTTCGTGGCTCTCTCTCC GTACGCGACCGTGCCCTTCCGGGGCATCCTCCTCCTGTGCCTCGTGGTCG CGCAGTTCTTGTCGTACGTGTGGTACACCCTCTCTTACGTCCCGTTCGCG CGGAGGTTTATGGCTGGGTTTTGGTCGGGGTTGAGAGGCGGAGGATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15101:134..481+

>mRNA_E-siliculosus-1a_F_contig15101.2975.1 ID=mRNA_E-siliculosus-1a_F_contig15101.2975.1|Name=mRNA_E-siliculosus-1a_F_contig15101.2975.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15101:134..481+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGTGGCGCAGCTGCTCACAGGGAACCCGCGGCCGTTCGTCCTCTATTT
CTCGCTGGGAAGCGCGCTGAACATCTGCAGCTCCTTTTTTCTCACGGGCC
CGTGGAAACAGATCAAGAAAATGTTCAATCCCGTGAGAGCCGTGGCCACC
AGCATCTACCTGGCCACCCTTTCCGCGACGCTGTTCGTGGCTCTCTCTCC
GTACGCGACCGTGCCCTTCCGGGGCATCCTCCTCCTGTGCCTCGTGGTCG
CGCAGTTCTTGTCGTACGTGTGGTACACCCTCTCTTACGTCCCGTTCGCG
CGGAGGTTTATGGCTGGGTTTTGGTCGGGGTTGAGAGGCGGAGGATGAAG
GGTGGCGCAGCTGCTCACAGGGAACCCGCGGCCGTTCGTCCTCTATTTCT
CGCTGGGAAGCGCGCTGAACATCTGCAGCTCCTTTTTTCTCACGGGCCCG
TGGAAACAGATCAAGAAAATGTTCAATCCCGTGAGAGCCGTGGCCACCAG
CATCTACCTGGCCACCCTTTCCGCGACGCTGTTCGTGGCTCTCTCTCCGT
ACGCGACCGTGCCCTTCCGGGGCATCCTCCTCCTGTGCCTCGTGGTCGCG
CAGTTCTTGTCGTACGTGTGGTACACCCTCTCTTACGTCCCGTTCGCGCG
GAGGTTTATGGCTGGGTTTTGGTCGGGGTTGAGAGGCGGAGGATGA
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