prot_E-siliculosus-1a_F_contig15055.2946.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig15055.2946.1
Unique Nameprot_E-siliculosus-1a_F_contig15055.2946.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length60
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig15055.2946.1 vs. uniprot
Match: A0A8J4PLR3_9MYCE (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PLR3_9MYCE)

HSP 1 Score: 48.1 bits (113), Expect = 7.650e-5
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 0 
Query:    1 WAELRRVYEDRAST-----TAVEFDPFEELLWAGHSDGRLTSYAQPDMTKHSS 48
            W E+R V E   S      T+V+FDP+EEL+W G+ +G++TS   P + ++SS
Sbjct:  111 WFEMRVVPEYPTSNVQNAITSVKFDPWEELVWVGYQNGKVTSMVHPTLDRYSS 163
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15055.2946.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J4PLR3_9MYCE7.650e-541.51PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..59
e-value: 2.2E-10
score: 42.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15055contigE-siliculosus-1a_F_contig15055:691..870 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15055.2946.1mRNA_E-siliculosus-1a_F_contig15055.2946.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig15055 691..870 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig15055.2946.1 ID=prot_E-siliculosus-1a_F_contig15055.2946.1|Name=mRNA_E-siliculosus-1a_F_contig15055.2946.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=60bp
WAELRRVYEDRASTTAVEFDPFEELLWAGHSDGRLTSYAQPDMTKHSSVA
AHRHGPVGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf