mRNA_E-siliculosus-1a_F_contig15055.2946.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15055.2946.1
Unique NamemRNA_E-siliculosus-1a_F_contig15055.2946.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig15055.2946.1 vs. uniprot
Match: A0A8J4PLR3_9MYCE (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PLR3_9MYCE)

HSP 1 Score: 48.1 bits (113), Expect = 7.650e-5
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    1 WAELRRVYEDRAST-----TAVEFDPFEELLWAGHSDGRLTSYAQPDMTKHSS 144
            W E+R V E   S      T+V+FDP+EEL+W G+ +G++TS   P + ++SS
Sbjct:  111 WFEMRVVPEYPTSNVQNAITSVKFDPWEELVWVGYQNGKVTSMVHPTLDRYSS 163
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15055.2946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J4PLR3_9MYCE7.650e-541.51PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15055contigE-siliculosus-1a_F_contig15055:691..870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size180
Model size180
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928016.916359-CDS-E-siliculosus-1a_F_contig15055:690..8701622928016.916359-CDS-E-siliculosus-1a_F_contig15055:690..870Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15055 691..870 -
1696318773.76605-CDS-E-siliculosus-1a_F_contig15055:690..8701696318773.76605-CDS-E-siliculosus-1a_F_contig15055:690..870Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15055 691..870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15055.2946.1prot_E-siliculosus-1a_F_contig15055.2946.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15055 691..870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15055.2946.1

>prot_E-siliculosus-1a_F_contig15055.2946.1 ID=prot_E-siliculosus-1a_F_contig15055.2946.1|Name=mRNA_E-siliculosus-1a_F_contig15055.2946.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=60bp
WAELRRVYEDRASTTAVEFDPFEELLWAGHSDGRLTSYAQPDMTKHSSVA
AHRHGPVGR*
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mRNA from alignment at E-siliculosus-1a_F_contig15055:691..870-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15055.2946.1 ID=mRNA_E-siliculosus-1a_F_contig15055.2946.1|Name=mRNA_E-siliculosus-1a_F_contig15055.2946.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=180bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15055:691..870- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGGGCCGAGCTCCGGAGGGTGTACGAGGACAGGGCCTCGACCACAGCGGT
GGAGTTCGATCCCTTTGAGGAGCTGCTGTGGGCCGGCCACAGCGACGGAC
GCCTGACTTCCTACGCGCAGCCGGACATGACCAAGCACTCGTCGGTGGCG
GCGCACAGGCACGGGCCTGTCGGCCGGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15055:691..870-

>mRNA_E-siliculosus-1a_F_contig15055.2946.1 ID=mRNA_E-siliculosus-1a_F_contig15055.2946.1|Name=mRNA_E-siliculosus-1a_F_contig15055.2946.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=360bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15055:691..870- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGGGCCGAGCTCCGGAGGGTGTACGAGGACAGGGCCTCGACCACAGCGGT
GGAGTTCGATCCCTTTGAGGAGCTGCTGTGGGCCGGCCACAGCGACGGAC
GCCTGACTTCCTACGCGCAGCCGGACATGACCAAGCACTCGTCGGTGGCG
GCGCACAGGCACGGGCCTGTCGGCCGGTGATGGGCCGAGCTCCGGAGGGT
GTACGAGGACAGGGCCTCGACCACAGCGGTGGAGTTCGATCCCTTTGAGG
AGCTGCTGTGGGCCGGCCACAGCGACGGACGCCTGACTTCCTACGCGCAG
CCGGACATGACCAAGCACTCGTCGGTGGCGGCGCACAGGCACGGGCCTGT
CGGCCGGTGA
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