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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1504.2935.1 vs. uniprot
Match: A0A6H5KBZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ9_9PHAE) HSP 1 Score: 238 bits (608), Expect = 1.270e-76 Identity = 111/118 (94.07%), Postives = 113/118 (95.76%), Query Frame = 3
Query: 126 MCGFKCVGQCCGLLSLFGIFFLFSVGHMFASQPMFTDVEVWEEHHDHDASVNCYIGGVIYICTLAASVGCFCFDKKRSARPPTIAHQASTTSYLDYTPENVPSPGEDEGAAILPRVAL 479
MCGFKC+GQCCGLLSLFGIFFLFSVGHMFASQPMFTDVEVWEEHHDHDASVNCYIGGVIYICTLAASVGCFCFDKKRSARPP IAHQASTTS+L YTPENVPSPGED GAAILPR L
Sbjct: 1 MCGFKCIGQCCGLLSLFGIFFLFSVGHMFASQPMFTDVEVWEEHHDHDASVNCYIGGVIYICTLAASVGCFCFDKKRSARPPPIAHQASTTSHLGYTPENVPSPGEDVGAAILPRAVL 118
BLAST of mRNA_E-siliculosus-1a_F_contig1504.2935.1 vs. uniprot
Match: D7FVZ4_ECTSI (Ferredoxin nitrite reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ4_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.680e-50 Identity = 90/105 (85.71%), Postives = 94/105 (89.52%), Query Frame = 3
Query: 207 MFASQPMFTDVEVWEEHHDHDASVNCYIGGVIYICTLAASVGCFCFDKKRSARPPTIAHQASTTSYLDYTPENVPSPGEDEGAAILPRVAL*ESGGGREPIGRGK 521
MF SQPMFTDVEVWEEHHDHDASVNCYIGGVIYICTLAASVGCFCFDKKRSARPPTIAHQASTTS+LDYTPENVPSPGEDEGAAILPR + G + +GR K
Sbjct: 1 MFPSQPMFTDVEVWEEHHDHDASVNCYIGGVIYICTLAASVGCFCFDKKRSARPPTIAHQASTTSFLDYTPENVPSPGEDEGAAILPRGVAVD--GSKVAVGRPK 103
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 357 |
| Model size | 927 |
| Exons | 3 |
| Ec32 ortholog | Ec-01_002730.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | signal peptide |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | P |
| EC | 1.7.7.1 |
| EggNOG OGs | COG0155@1,KOG0560@2759 |
| EggNOG free text desc. | sulfite reductase (ferredoxin) activity |
| GOs | GO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0010035,GO:0010167,GO:0016020,GO:0016491,GO:0016661,GO:0016662,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0050421,GO:0050896,GO:0055114,GO:0098809,GO:1901698,GO:1901700 |
| KEGG Module | M00531 |
| KEGG Pathway | ko00910,ko01120,map00910,map01120 |
| KEGG Reaction | R00790 |
| KEGG ko | ko:K00366 |
| KEGG rclass | RC00176 |
| Preferred name | NIR |
| Seed eggNOG ortholog | 2880.D7FVZ4 |
| Seed ortholog evalue | 4.5e-45 |
| Seed ortholog score | 187.2 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1504.2935.1 >prot_E-siliculosus-1a_F_contig1504.2935.1 ID=prot_E-siliculosus-1a_F_contig1504.2935.1|Name=mRNA_E-siliculosus-1a_F_contig1504.2935.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=119bp
MCGFKCVGQCCGLLSLFGIFFLFSVGHMFASQPMFTDVEVWEEHHDHDAS
VNCYIGGVIYICTLAASVGCFCFDKKRSARPPTIAHQASTTSYLDYTPEN
VPSPGEDEGAAILPRVAL* back to topmRNA from alignment at E-siliculosus-1a_F_contig1504:7191..10789- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1504.2935.1 ID=mRNA_E-siliculosus-1a_F_contig1504.2935.1|Name=mRNA_E-siliculosus-1a_F_contig1504.2935.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3599bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1504:7191..10789- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CATTTCAGCAGCCTTGCTCTCTCTACAGGAGGGGAACACTGCAGTGGTCG
CTTGGGTCACGTCTCAGCGCACCACCCGGGGGATTTTCAGCCCAATTCAG
CGTGGCACCAAAAGGCGGCCGAGAGATGTGCGGCTTCAAGTGTGTCGGCC
AGGTGACGATGTGACGATCCATGTCGCGAACGATTGTTGCAATTGTACCG
GAAGTTCAGCAGCAGAATGGTATTGCTCCCGCTACTACTGCTGCTGCTGT
ACAGCACCGTGAAGGTAACACAGCATGCCATTCCTGTCGTATTCGTAGTC
AGGATGGATTAGAAGTCGTTTTGTGCCGGGATTGGTGAGGGTGTCCAGAG
TTAAGAGTGTAGAACGGCGTTTACCAAGACCAATAAAACTCAAGTACACA
CCTACCTCCCCCAAGAAGAGGGATGTAGGAAGAGGTTGGTATCAATATCA
AGCTCCGCTTCCCTTGCACACACAGCAGCAGTGGAACAAGCCCGCGCAAA
GCGATAAATGCGGTTGGTGCCCACGTGCTTGTCCACTGCCTGCTTGATTC
TGACGGCTGCCCTCGAAAAGCTACGCGCGAGGCGGGCGTAAATCATGACC
GCTTTGAAAGAGAGGATCGGGATCATGTTGCCTGTCTACTTGTACTTGTA
TGCATACGTCGTGTACCGGCACCTGGTGTGCGTCCCGTACGTCCACAGCA
GTAGACAGCAGTAGGTTGTAGGTTCACAATCCAACACCAACACCGCCAAA
GGTTCACAATCCAACACCAACACCGCCAACACCCACCTTGCTCCCCGTAG
ATAAGTACACGAGTATTGTACCTGCCCACAGGACGCGTCTCCACTGCAAG
CACAACAAGCAGCAGTGACAATGTACAGATGTATTCTATGTAAACCAGGA
ACAACACCTTTGCAAGTGCTGTTTACTCGCGTGCCAAGAGCCAAGAGGAG
CAAGCCCCAAAACAACAGTCCCACCCCGGATGCTGACAAAACTACTTACT
ACTGCTGTGAGACGGAGAACCACACCATGCCACCATGTCGGAGCTTTTTG
TTTTAGTTAGCCGGCCTCCTGTTGTTGGTCTCAGGGGTCTCATTCTTCAC
CGCGGGTGTTTGATGGTAAAGCAGTACCGTTTTGCCGACGTCCCCCTTTT
GGAGCTGTAATCGCACGTCATACGTCGTGAGATACTGCTATATGTACCTG
CACGGACGAACAACCAGCAGGCAGCAGCCTCTTCGTTCATCTACAACAAA
TACGTAGTCTCCAAAGTCTACCAGAGGGTACCCACAGGTACATATATACA
CCCAACCGTACGCTTCAAATGACCAGCGCATGGTATTTTGAAGACAGCTT
CTCTCTACTTTTTACTTTTTACCCCTGACGAAGCGTTTGTCAACCCGTGT
TCTAAATAGCAACCCTCCAATAAGTGTGTTGTGGTTGTTGTCTTCACGTT
TGTACAGTGTAGCTTGACAAAGTTCGAAAAGCTACTTGTTACTGCGAGTC
GTTTGTGCAGGGTTTCTGGCCGGCCCGTGAGATGAGCTCTCCATGCCGTC
ACATGCTGGCTGCTGCAATACCTGCTTCTTCATCAACCACAGGCAGTTTG
TGCTTTCACGTCCTGGAACAAGATTTTTGAGTGTATACAACAGTAGCGCG
TTGCGATATCTGGTACGACGAAGTATGCGTATAGTATGTCTTCAACGAAC
TACCGCCACTGCTGTTAATTGTCAGTACTGTACACATCAACTATTGAAAT
TTTCGGCGTATGTATCTGTACCATGGTGCTTTTTTATGTGTGGGCACGTG
TTCCTATATACATACACACTGTTAGACTGCTGTATTCGGTGCTGTCTATA
GTACCGCCCGAACAGGAGGTATCGGGACCTACACCACGCCCTATTCTGCG
TGAACGTTACGCAGCAGAAGCAGCTCCATCTCACATTTTTCCCATTAAGT
TCGCTTCCGGCCACCTACAGTACTTGTGATACGCTAACGAATGCCCCCCC
CCCCCCCCCCCCCGATTGTCGTTTTGCCGAACGACTGTTGTATGGCGGCA
ACAACAACAACAACGACAACAACAACGCTGCAACACACAGTGCTGTGGAC
TGTTGTCCTTGTTCGGCATTTTCTTTTTGTTTAGCGTGGGGCACATGTTC
GCCTCGCAGCCTATGTTCACGGACGTGGAGGTTTGGGAGGAACACCACGA
CCACGACGCCTCCGTCAACTGTTACATAGGCGGGGTTATCTACATCTGCA
CGTTAGCGGTGAGTTCAGCAACGGTCAGGCCGCGTCCTCGGACGGTCTTG
TCGTGAGACAGGGACGGGGAACCTGTGGTTTCTCCCTCCGTAGTGTGGTA
CTTTTGACGCCTGCGTGCACATCACACCTCGAAGCTGCTCGCTGTTGGTA
GCCCCGTCTTGAATCGTCTGTTCGTCGCTGTCATCCTTGGCCACGGACGT
ATGTAACTGTCGAATTTCTCGATAATACAGCCAATGCGCAGCAATAACTC
GTCGCCCCCCCTTTGTACTCATTGCAAACTTGAGGCGCGCGCGAGAGAGA
GGTGGTGAGCGGGGCGCTTCTGTACGTTTCGTGGCTGCTTGCGGTGTCTT
GATTTGGACGTTCCGTTTCGGCGTCGCCCCTCGGGGATGCATTTTATTGT
ACGTTCTCATTTTTGCTCCCGCATGTTTGCGTTGAACCTCTCCTCTCCAA
TGGGCTGTCAGCTGCTGCGGGAAGGGAAGAAGGAGCCTTTCCCAAACAAC
CCTGGTGTACCCGGGCGCTTCTCTTCTTCCGATTTGAGCGAGCTTAACGC
AAGCGTTGTGTGCGAACGGCTGCTCGTCGCGGGTTCTCCAAATCACGCGC
TGGTCGACTCTAGACGCATTTGGTCGTGCGGGCCGCGAGCCCTTCACCAC
GCTGCTGTTTTCTTCGTGGGTCTGAACCCGACAGTTTTGTTTTTTCGTCC
CCCCTTGTCCGTCCGTACGCTGCTGCATCATCTCCGTGCCAGGCATCTGT
CGGGTGCTTTTGTTTCGATAAGAAGCGGTCTGCGCGGCCCCCGACGATCG
CACACCAGGCATCAACAACATCCTACTTGGACTACACCCCAGAGAATGTC
CCCAGTCCAGGAGAAGACGAGGGAGCCGCGATTCTGCCGAGGGTGGCGCT
CTGAGAGAGCGGGGGAGGGAGAGAGCCGATAGGACGAGGGAAGTAACGTG
TCCGTGCTAGCATGCGGACGGAGAGGAAGAGCAGGGTATGCTGTGAGGCG
GCGTTTGCGCGGCCGGCTCTCGTCGTCATGTACAGGGGGGAAAGTACGCC
TGGAGTTTGTTAGGGACTAGCTCCGGGCGTTTGGCGTTAAAGCGACGGCG
GCGGCAGCAGCAGCAGCAGCAGCAGCAGGCACGTCATGCTGGTTCGGCAC
ACGGAACACGTGTTCTTTTGGTTTGTGCTTCCTAGTCAAGGCCGCGAGGA
TGGGACCCGCCTGCCCGGAGCCTACATGGTTGTGTAGGGGAGCTGTGCAC
TCGTCGGCGTATTGTTGCTTGCAAGGTAGAGCCAATGAGAGGGAAGGGGC
CTGTTTCTATGTGTAGCCGCAAGTGTTCGAAAGCACGAGCTTCTTGTTT back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1504:7191..10789- >mRNA_E-siliculosus-1a_F_contig1504.2935.1 ID=mRNA_E-siliculosus-1a_F_contig1504.2935.1|Name=mRNA_E-siliculosus-1a_F_contig1504.2935.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1504:7191..10789- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGCGGCTTCAAGTGTGTCGGCCAGATGTGCGGCTTCAAGTGTGTCGG
CCAGTGCTGTGGACTGTTGTCCTTGTTCGGCATTTTCTTTTTGTTTAGCG
TGGGGCACATGTTCGCCTCGCAGCCTATGTTCACGGACGTGGAGGTTTGG
GAGGAACACCACGACCACGACGCCTCCGTCAACTGTTACATAGGCGGGGT
TATCTACATCTGCACGTTAGCGTGCTGTGGACTGTTGTCCTTGTTCGGCA
TTTTCTTTTTGTTTAGCGTGGGGCACATGTTCGCCTCGCAGCCTATGTTC
ACGGACGTGGAGGTTTGGGAGGAACACCACGACCACGACGCCTCCGTCAA
CTGTTACATAGGCGGGGTTATCTACATCTGCACGTTAGCGGCATCTGTCG
GGTGCTTTTGTTTCGATAAGAAGCGGTCTGCGCGGCCCCCGACGATCGCA
CACCAGGCATCAACAACATCCTACTTGGACTACACCCCAGAGAATGTCCC
CAGTCCAGGAGAAGACGAGGGAGCCGCGATTCTGCCGAGGGTGGCGCTCT
GAGCATCTGTCGGGTGCTTTTGTTTCGATAAGAAGCGGTCTGCGCGGCCC
CCGACGATCGCACACCAGGCATCAACAACATCCTACTTGGACTACACCCC
AGAGAATGTCCCCAGTCCAGGAGAAGACGAGGGAGCCGCGATTCTGCCGA
GGGTGGCGCTCTGA back to top
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