mRNA_E-siliculosus-1a_F_contig1499.2893.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1499.2893.1
Unique NamemRNA_E-siliculosus-1a_F_contig1499.2893.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2893.1 vs. uniprot
Match: A0A6H5KSE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSE8_9PHAE)

HSP 1 Score: 555 bits (1431), Expect = 1.990e-193
Identity = 287/308 (93.18%), Postives = 295/308 (95.78%), Query Frame = 2 
Query:   59 MHLRRLLFPAAATLARAAEVRSFTLTSGAAGAVRHFSGSPRRQQLGAFLHGSEPLSRSSTGRTVSQVSRGMATGEGAGSGEILNLKTAQDVVDFWFGTDLARLASDKEYGQRFGAKWFGAGPPDQAFIGTQNASKELMAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERMEAQDAGVSTVKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQGASEPSSPS 982
            M  RRLLFPAAATLARA EVRSFT TSGAAGAV+H S SPRRQQLGAFLHGSEPLSRSSTGRTVS+VSRGMATGE AGSGEILNLKTAQDVVDFWFGTDL RLASD+EYGQ FGAKWFG GPPDQAFIGTQNASKELMAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFA+DETAASLSLEIISKGWDTVDA+NYTFQQRLFVYLPLMHSER+EAQDA VS VKALVDDEMKATGSA+SLVHDMALEHRGVVAKFGRFPHRNAAL RESTPEEL+WLSSDDIPGWAKSQGASEPSSPS
Sbjct:    1 MLFRRLLFPAAATLARAVEVRSFTSTSGAAGAVQHLSVSPRRQQLGAFLHGSEPLSRSSTGRTVSKVSRGMATGEKAGSGEILNLKTAQDVVDFWFGTDLVRLASDREYGQSFGAKWFGVGPPDQAFIGTQNASKELMAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFAHDETAASLSLEIISKGWDTVDARNYTFQQRLFVYLPLMHSERIEAQDACVSKVKALVDDEMKATGSADSLVHDMALEHRGVVAKFGRFPHRNAALRRESTPEELQWLSSDDIPGWAKSQGASEPSSPS 308
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2893.1 vs. uniprot
Match: D7FVL0_ECTSI (Putative transmembrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL0_ECTSI)

HSP 1 Score: 459 bits (1181), Expect = 1.120e-156
Identity = 231/238 (97.06%), Postives = 233/238 (97.90%), Query Frame = 2 
Query:  269 MATGEGAGSGEILNLKTAQDVVDFWFGTDLARLASDKEYGQRFGAKWFGAGPPDQAFIGTQNASKELMAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERMEAQDAGVSTVKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQGASEPSSPS 982
            MATGEGAG GEILNLKTAQDVVDFWFGTDLARLASDKEYGQ FGAKWFGAGPPDQAFIGTQNASKEL+AKAGSGELKGEEWET KGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSER+EAQDAGVS VKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQ ASEPSSPS
Sbjct:    1 MATGEGAGLGEILNLKTAQDVVDFWFGTDLARLASDKEYGQSFGAKWFGAGPPDQAFIGTQNASKELVAKAGSGELKGEEWETSKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERIEAQDAGVSKVKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQSASEPSSPS 238
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2893.1 vs. uniprot
Match: A0A835Z6H1_9STRA (Putative transmembrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H1_9STRA)

HSP 1 Score: 174 bits (442), Expect = 4.390e-47
Identity = 107/219 (48.86%), Postives = 131/219 (59.82%), Query Frame = 2 
Query:  311 LKTAQDVVDFWFGTDLARL-ASDKEYGQRFGAKWFGAGPPDQAFIGTQNASKELMAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERMEAQD---AGVSTVKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQ 955
            L   QDV+ FWFG D A L A     G RF   WFG G  D+ F   Q  +K+L+ +A +G   G EW+ P+  LAR+++LDQF RT YR T+QAF  DE AA +S   I  G D    + +T  +RLF YLPLMHSERME Q    A V++   L D        ANS        H  VV +FGRFPHRNAA+GR STPEEL WL+SD +PGWA+SQ
Sbjct:   10 LHLLQDVLTFWFGDDAAALTAGSPARGYRF-KLWFG-GANDERFDALQVEAKDLIQQAAAG---GPEWDGPRNTLARIIVLDQFSRTAYRATAQAFERDEMAADISAAAIDAGSD----EQFTPYERLFFYLPLMHSERMEYQRLCLAKVTSTPGLED----CIAFANS--------HLVVVEQFGRFPHRNAAMGRTSTPEELAWLASDKLPGWARSQ 207
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2893.1 vs. uniprot
Match: A0A7J7INC6_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7INC6_9RHOD)

HSP 1 Score: 170 bits (430), Expect = 1.520e-44
Identity = 95/223 (42.60%), Postives = 140/223 (62.78%), Query Frame = 2 
Query:  311 LKTAQDVVDFWFGTDLA------RLASDKEYGQRFGAKWFGAGPPDQAFIGTQNASKELMAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERMEAQDAGVSTVKALVDDEMKATG--SANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQ 955
            L + +DV  FWF  + +      +L+S + +G+R   +WF +   D+ F   Q  + EL+ +AG GEL G+ W+ P G LAR++L DQFPR ++RG ++AF+ D+ A  +S  II +GWD      + + +R F+YLPLMHSE +  Q   V  V+A  DD    T    ++S    MA +H  V+ +FGRFP+RN ALGRESTPEE+EW++S+D+P +AKSQ
Sbjct:    4 LTSPEDVFRFWFELEPSQEKRREKLSSLRYFGER-APQWFFS--KDKEFERVQIDNVELVHRAGRGELHGDSWDQPLGLLARIILTDQFPRCIWRGRAEAFSYDKVARGISRLIIERGWDK---SQFFYVERTFIYLPLMHSEDLADQLDSVRLVRAAADDTSWWTRWRHSHSTSLKMAEDHLRVIQRFGRFPYRNQALGRESTPEEIEWMNSEDLPVYAKSQ 220
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2893.1 vs. uniprot
Match: M1V5Y2_CYAM1 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1V5Y2_CYAM1)

HSP 1 Score: 152 bits (384), Expect = 6.590e-38
Identity = 92/231 (39.83%), Postives = 131/231 (56.71%), Query Frame = 2 
Query:  311 LKTAQDVVDFWFGTDLA-----RLASDKEYGQRFGAKWFGAGPPDQAFIGTQNASKELMAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERMEAQDAGVSTVKALVDDEMKATGS--------ANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQGAS 964
            L +A+DV  FWFG + +     +  S   Y +   A WF     ++ F   Q  S +L+ +AG GEL G EW+ P G LAR+LL DQFPR ++RG ++AF  D  A  +   I+ KGWD  +   + F +R+F+YLPL HSE +  Q   V  ++        A GS        A S+   MA +H  V+ +FGRFP+RN +LGR S+P+E+ WL S ++P +AKSQ AS
Sbjct:   17 LNSAEDVFTFWFGVEPSLEKRRKCLSSFSYFESRVATWFLG--KNKEFELVQLESVDLVHRAGRGELHGGEWDQPLGLLARILLTDQFPRCIWRGRAEAFQYDNVARGICRAILEKGWDKSE---FFFAERIFIYLPLEHSESLADQRECVRLMRTA------AAGSPWLTRWKHARSVNVKMAEDHLRVIERFGRFPYRNESLGRASSPDEIAWLRSGNLPVFAKSQLAS 236
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2893.1 vs. uniprot
Match: A0A7R9UCH7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCH7_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.640e-36
Identity = 83/214 (38.79%), Postives = 119/214 (55.61%), Query Frame = 2 
Query:  326 DVVDFWFGTDL---ARLASDKEYGQRFGAKWFGAGPPDQAFIGTQNASKELMAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERMEAQDAGVSTVKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQG 958
            DV+ FWFG +        S   Y +    +W+  GP   A      +  +L+  AG+G+L GEEWE P G +AR+LL DQ  R  +RGT++AFA DE A  LS++ I  G D       TF +R F+Y+ LMHSE  E  +  ++   + ++   +        +      H  V+ +FGR+PHRN ALGRE+TPEE E+L+ DD+P W +SQG
Sbjct:   40 DVLRFWFGDEYFEDREALSRPGYMESQNDRWWMGGPEMDAQC---ESFADLVRAAGAGKLVGEEWEEPNGKVARVLLCDQIARGAFRGTTEAFAYDEVACGLSMQAIENGEDMPGI--LTFAERWFLYVALMHSENAETHELCLARFHSYLEHYPELEADVRFGI-GFEEAHYDVIKRFGRYPHRNKALGRENTPEETEFLAQDDLPAWMRSQG 247
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2893.1 vs. uniprot
Match: A0A816V5U6_9BILA (Hypothetical protein n=2 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816V5U6_9BILA)

HSP 1 Score: 144 bits (363), Expect = 9.390e-36
Identity = 87/231 (37.66%), Postives = 126/231 (54.55%), Query Frame = 2 
Query:  299 EILNLKTAQDVVDFWFGTDLAR-----LASDKEYGQRFGAKWFGAGPPDQAFIGTQNASKELMAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERMEAQDAGVSTVKALVD------DEMKAT-GSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQ 955
            E+  L ++  V+ +WFG D  +       ++ +Y +     WFG   P   F   Q+ S EL+A         E+W +  G +A++L+ DQF R++YRGT++AF  D+      + ++SK W      +YT  +RLF+ + L HSE MEAQ  GV     +VD      D++K    +     H    EH  V+ +FGRFP RN A+GREST EE+EWL+S D PGWAKSQ
Sbjct:    6 EMTLLNSSDQVLSYWFGGDYFKEEAHNTLNNVDYIKSRMPLWFGRADP--TFDLVQSNSVELLALLERIHNTSEDWSSKTGIMAKILVFDQFARSIYRGTAKAFQYDDHTRECVMFLLSKNWFL----DYTAIERLFIIIALQHSELMEAQTMGVKLASTIVDNITENHDDLKYYFDNLKGFPH----EHHDVIQQFGRFPGRNDAMGRESTVEEVEWLTSPDCPGWAKSQ 226
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2893.1 vs. uniprot
Match: UPI0019DD02EA (DUF924 domain-containing protein n=1 Tax=filamentous cyanobacterium LEGE 07170 TaxID=1828880 RepID=UPI0019DD02EA)

HSP 1 Score: 141 bits (356), Expect = 3.450e-35
Identity = 86/200 (43.00%), Postives = 117/200 (58.50%), Query Frame = 2 
Query:  323 QDVVDFWFGTDLARLASDKEYGQRFGAKWFGAGPPDQAFIGTQNASKELMAKAGSGELKGEEWET-PKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERMEAQDAGVSTVKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWL 919
            Q V++FWFG      + +  Y QR    WF         I  +     L A+A +GEL  + WET P+  LA LL+LDQFPR ++R T +AFA DE A +++   + +G+D    +  T  QRLF+YLPL HSE +E Q   V+ VK L D++     +A    +D AL HR V+ +FGRFPHRNA LGREST EE ++L
Sbjct:    7 QAVLNFWFGDP---ASPESSYAQRR-KLWFTKSEETDETI--RQEFMPLYAQAATGEL--DSWETEPRSCLALLLILDQFPRNLFRDTPRAFATDEKALAIAKRAVDRGFD----KELTLVQRLFMYLPLEHSENLEDQHRSVALVKTLKDED-----AALEDAYDYALRHRDVIQRFGRFPHRNAILGRESTAEEQDFL 189
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2893.1 vs. uniprot
Match: A0A0K1ZJ47_RALSL (Membrane protein n=18 Tax=Burkholderiaceae TaxID=119060 RepID=A0A0K1ZJ47_RALSL)

HSP 1 Score: 136 bits (343), Expect = 1.940e-33
Identity = 88/208 (42.31%), Postives = 119/208 (57.21%), Query Frame = 2 
Query:  302 ILNLKTAQDVVDFWFGTDLARLASDKEYGQRFGAKWFGAGPPDQAFIGTQNASKELMAKAGSGELKGEEW-ETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERMEAQDAGVSTVKALVDDEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLS 922
            ++ L TA DV+ FWFGT  A +A+         A WF       A I  +         AGS +     W +TP  A+AR+++LDQFPR ++RGT +AFA+D TA   +  +++ GWD   A+  T   R+F YLP  HSE + AQD  +     L D E    G A+SL+   A  HR ++A+FGRFPHRNAALGR STPEE+ +LS
Sbjct:    1 MIGLPTADDVLAFWFGT--APIAAPC-------ATWFDRSDAFDADIRARFLPLWEALCAGSADT----WMDTPLEAIARIVVLDQFPRNMFRGTPRAFASDATALHTARIVVAAGWD---AELPTRFHRMFCYLPFEHSEALAAQDESIRLFTRLRDQE----GDADSLM--WAHRHRDIIARFGRFPHRNAALGRASTPEEIGFLS 186
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BLAST of mRNA_E-siliculosus-1a_F_contig1499.2893.1 vs. uniprot
Match: A0A7S3M5A7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5A7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.200e-32
Identity = 84/210 (40.00%), Postives = 117/210 (55.71%), Query Frame = 2 
Query:  302 ILNLKTAQDVVDFWFGTDLARLASDKEYGQRFGAKWFGAGPPDQAFIGTQNASKELMAKAGSGELKGEEWETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTVDAQNYTFQQRLFVYLPLMHSERMEAQDAGVSTVKALVD--DEMKATGSANSLVHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSS 925
            I++L T QD++DFWFG+D + L         FG  +F   P  +     + A  + ++ A S    GEEW T +G LAR+++LDQ  RT +RGT +AFA D+ A  L L+II KGW       Y   +R  + LPL+HSE + A       V  L +  +  +      S V  +A EH  VV KFGR+P RN+ALGR +TPEE E+L+S
Sbjct:    9 IMSLATPQDILDFWFGSDRSLLNEVSHIKHLFGVWFFRTNPAVETTFIAEAAQIDKLSDASS---LGEEWFTAEGILARVVMLDQGTRTAFRGTPKAFAYDDIAKELVLDIIQKGWFF---DKYLPVERQILCLPLLHSEDIHAHRVASELVHRLSEGTENPELVQMFKSNVSFLA-EHTQVVEKFGRYPSRNSALGRTNTPEEEEYLAS 211
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1499.2893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSE8_9PHAE1.990e-19393.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVL0_ECTSI1.120e-15697.06Putative transmembrane protein n=1 Tax=Ectocarpus ... [more]
A0A835Z6H1_9STRA4.390e-4748.86Putative transmembrane protein n=1 Tax=Tribonema m... [more]
A0A7J7INC6_9RHOD1.520e-4442.60Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
M1V5Y2_CYAM16.590e-3839.83Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A7R9UCH7_9STRA1.640e-3638.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A816V5U6_9BILA9.390e-3637.66Hypothetical protein n=2 Tax=Rotaria magnacalcarat... [more]
UPI0019DD02EA3.450e-3543.00DUF924 domain-containing protein n=1 Tax=filamento... [more]
A0A0K1ZJ47_RALSL1.940e-3342.31Membrane protein n=18 Tax=Burkholderiaceae TaxID=1... [more]
A0A7S3M5A7_9STRA4.200e-3240.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1499contigE-siliculosus-1a_F_contig1499:14969..21086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size927
Model size1944
Exons7
Ec32 orthologEc-15_003690.1
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2S80R@2759,COG3803@1
EggNOG free text desc.Bacterial protein of unknown function (DUF924)
Seed eggNOG ortholog2880.D7FVL0
Seed ortholog evalue3.2e-127
Seed ortholog score461.5
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928008.388214-UTR-E-siliculosus-1a_F_contig1499:14968..150261622928008.388214-UTR-E-siliculosus-1a_F_contig1499:14968..15026Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1499 14969..15026 +
1696318770.365377-UTR-E-siliculosus-1a_F_contig1499:14968..150261696318770.365377-UTR-E-siliculosus-1a_F_contig1499:14968..15026Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1499 14969..15026 +
1622928008.5391426-UTR-E-siliculosus-1a_F_contig1499:20127..210861622928008.5391426-UTR-E-siliculosus-1a_F_contig1499:20127..21086Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1499 20128..21086 +
1696318770.433334-UTR-E-siliculosus-1a_F_contig1499:20127..210861696318770.433334-UTR-E-siliculosus-1a_F_contig1499:20127..21086Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1499 20128..21086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928008.4346914-CDS-E-siliculosus-1a_F_contig1499:15026..152051622928008.4346914-CDS-E-siliculosus-1a_F_contig1499:15026..15205Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 15027..15205 +
1696318770.375567-CDS-E-siliculosus-1a_F_contig1499:15026..152051696318770.375567-CDS-E-siliculosus-1a_F_contig1499:15026..15205Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 15027..15205 +
1622928008.4502895-CDS-E-siliculosus-1a_F_contig1499:16475..165661622928008.4502895-CDS-E-siliculosus-1a_F_contig1499:16475..16566Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 16476..16566 +
1696318770.3839653-CDS-E-siliculosus-1a_F_contig1499:16475..165661696318770.3839653-CDS-E-siliculosus-1a_F_contig1499:16475..16566Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 16476..16566 +
1622928008.4683213-CDS-E-siliculosus-1a_F_contig1499:17359..175171622928008.4683213-CDS-E-siliculosus-1a_F_contig1499:17359..17517Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 17360..17517 +
1696318770.3924115-CDS-E-siliculosus-1a_F_contig1499:17359..175171696318770.3924115-CDS-E-siliculosus-1a_F_contig1499:17359..17517Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 17360..17517 +
1622928008.4787443-CDS-E-siliculosus-1a_F_contig1499:17988..180781622928008.4787443-CDS-E-siliculosus-1a_F_contig1499:17988..18078Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 17989..18078 +
1696318770.4007401-CDS-E-siliculosus-1a_F_contig1499:17988..180781696318770.4007401-CDS-E-siliculosus-1a_F_contig1499:17988..18078Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 17989..18078 +
1622928008.489193-CDS-E-siliculosus-1a_F_contig1499:18284..184441622928008.489193-CDS-E-siliculosus-1a_F_contig1499:18284..18444Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 18285..18444 +
1696318770.409022-CDS-E-siliculosus-1a_F_contig1499:18284..184441696318770.409022-CDS-E-siliculosus-1a_F_contig1499:18284..18444Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 18285..18444 +
1622928008.5008035-CDS-E-siliculosus-1a_F_contig1499:19140..192621622928008.5008035-CDS-E-siliculosus-1a_F_contig1499:19140..19262Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 19141..19262 +
1696318770.4171257-CDS-E-siliculosus-1a_F_contig1499:19140..192621696318770.4171257-CDS-E-siliculosus-1a_F_contig1499:19140..19262Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 19141..19262 +
1622928008.5221827-CDS-E-siliculosus-1a_F_contig1499:20000..201271622928008.5221827-CDS-E-siliculosus-1a_F_contig1499:20000..20127Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 20001..20127 +
1696318770.4252203-CDS-E-siliculosus-1a_F_contig1499:20000..201271696318770.4252203-CDS-E-siliculosus-1a_F_contig1499:20000..20127Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1499 20001..20127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1499.2893.1prot_E-siliculosus-1a_F_contig1499.2893.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1499 15027..20127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1499.2893.1

>prot_E-siliculosus-1a_F_contig1499.2893.1 ID=prot_E-siliculosus-1a_F_contig1499.2893.1|Name=mRNA_E-siliculosus-1a_F_contig1499.2893.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=309bp
MHLRRLLFPAAATLARAAEVRSFTLTSGAAGAVRHFSGSPRRQQLGAFLH
GSEPLSRSSTGRTVSQVSRGMATGEGAGSGEILNLKTAQDVVDFWFGTDL
ARLASDKEYGQRFGAKWFGAGPPDQAFIGTQNASKELMAKAGSGELKGEE
WETPKGALARLLLLDQFPRTVYRGTSQAFANDETAASLSLEIISKGWDTV
DAQNYTFQQRLFVYLPLMHSERMEAQDAGVSTVKALVDDEMKATGSANSL
VHDMALEHRGVVAKFGRFPHRNAALGRESTPEELEWLSSDDIPGWAKSQG
ASEPSSPS*
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mRNA from alignment at E-siliculosus-1a_F_contig1499:14969..21086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1499.2893.1 ID=mRNA_E-siliculosus-1a_F_contig1499.2893.1|Name=mRNA_E-siliculosus-1a_F_contig1499.2893.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6118bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1499:14969..21086+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCAAAGAGCACGCACCTCCGGAGCGGTAGTGCCTGATGACACACAACGGC
ATCTTGAAATGCACTTGAGGCGTCTCCTGTTTCCAGCAGCGGCCACCTTA
GCTAGGGCAGCAGAGGTTCGGAGTTTCACGTTGACTTCCGGAGCTGCTGG
TGCCGTGCGACATTTCTCAGGAAGCCCCCGCCGACAGCAGCTCGGTGCCT
TTCTTCACGGTTCGGAACCGCTGTCGAGATCTAGCACGTGAGAGCAAATA
ATCAAGCACCATGCGTGCATGCATGTTCCGGAGCGTTCAACGTCTTTGAC
ATCTGCAGGCGCGATATGTGCCAATCCACTGATACCTGACATGGGGAACT
GCAATCGATAAGGAAAGTGCATTTTTGCACAGGTCGTATGTACTCATGGC
GCGAGAGGAGAGCGGATTTTTGCACCGCATTCTGAAAATCTGGCCGTTGC
GGACTTGGTGTGTCTTTGGGCGCGGTACGCTACAAACACAGGCGGAGAGC
GTCTGCAGGTGGAAACGAAACCAGTTAAGGTTAAAGCCAAGAGATCCCAG
TCGTCCAGAGACTGCGCTAGTGTGATGGACGCTGGCCGACTTGCGTAGAG
TAACTTTCCCCGGGGTCTCGGGCGTGTTCAGTAGTCAGTAGTCGGGCTCG
TCCAGTTCGCTGTGCGGGACAAAAAACATGATATCCCCCGCACGAACGGC
ACACTTCATGTACAGTAGGTTTCTTGAGCGTCGTCCAAACATCCAAAGAA
ATTGGAGTGAGTTGAAGCCAATCTAGATTGTAGCCCAGGATACACCGACG
AGAAAGACCCAAAGGGTGACCCTTGGTTCACCTTTTTGCCGGTATGGCAT
ATATGTAGTGTGATGCAACATTGACAGGAGGCCCCCAAATACACTGTCCT
GCTGGATATGCTTTGCGTGCAAGACATTTCGTCGCCAGCTATTTTCCCGC
AAGGCTTGAGAGGGCCGAGGACAGACGCAACCGGGTGGCGTTGGGCGAGA
TTGGGTAGCGAGATATGCGGTTCACGTTTTTTCACCGGCAAACAATGGAC
GACTGCCCGGGGGAAGAGCCCTCCCTTCGCGCCCCGACAGCAGTAGGTGT
CTGTTTCTTGCAACGGAAAGGAAGGGTCAATGGAGAGCCCAAACGCGAAT
GCGGTCCAACAAATGTCCCCGCGGGCGAATCACTCACGCAGGAGAATAAA
TGCATAAATGCACGCTTTTTGGCTCCAGTGAACAGAACGCTCGTCGAACT
CTGGTGAAGACCTGACGATGTAGCCTACCGGTGCTCATTTTACCGGGTTT
GCGCCATGTTCCACTCGATTCAGGATAAAATAAAAAAGCAATATCAAATA
CTGCTGTATGTGGGATGGTTACATGTAACGGAAGATGGAGCATGAGGGTT
AGGAACCTCTCATGTTTTGTTTTGCTCGACGAGATGCCGGCGGTCAACTA
CCCAATATTGTACATATGGAATCGACCACAAACAAGGACTTGGTTTGCCC
CACACAGGGGACGCACAGTCTCCCAGGTCAGCAGGGGCATGGCTACCGGA
GAGGGAGCGGGATCGGGGGAGATCTTGAACCTCAAGACTGCGCAAGATGT
GAGTAGCAAGAAAAACGCCCTTCCGTACTGCAAGGTAACATTCACACGTT
TCGAAGTAGTGCCGGCCTATTTTCACGCGAGCGAATTGTTTCCCTGGAAT
AGACTTGCACAGGGACAACGTATCCCACTGCCATACAATTTCAATGCCTA
CGGGGTTGCGTTGATGGCGGCTTGAATAGTGCGGTTCCACAACCGAAGCG
TCGTTGTACTATCGAAAACCATGCTGTGCTCTGGACAAATACACTCCTGG
TAGGGCTCCGATTGGAAAGAGAGGTCTCTGGCCTGCGCTCGCCTCTTGCG
GAAGACTCGATTATTCCCACAAATCCTGTTCTTCTCTGGAATATTTGTCT
CACATATCTTAACTTCGGCTTGAGATATTGTCGGCTTGTTCAGAATCTAA
TATTCGCTTGTCAAGACCTCGCGTCGGTTGCAGATTAGTTATTAGTGATG
GTAACGGTTGTTCGCGTGTAGTATGACGGGCTGACACGTCGTGAACGAAA
TGAAAAAGGGGTGGGGCAACATCTAGAAGGCGGGCATTCTTGACTGCGTA
GTTTACAGAAACTCCCCACCTTTGTAAATTGCACTTGGACACTCAAGTTT
ACGTTGTGAAAGTCGAAATGCATCGCCTGTGTACGCCCTCTAGACACCGT
GAGGGGTTCCTGGGAACAGTTTCATTGAATTTTATCTTCCGACGCCTTCA
TGCGTTGTGCCTTTTCTGTCTCTTGAGCCCGTTTATTTTCAGCTCGACAT
GGTTTTGCTCATCTTCCTTTGTTTTGTCGCGATTTGACAAGGTGGTGGAT
TTCTGGTTCGGCACCGACTTGGCTCGCCTGGCGTCGGACAAGGAGTACGG
CCAAAGGTTCGGCGCAAAGTGGTTCGGCGCCGGTCCACCAGACCAGGCCT
TCATCGGCACCCAAAATGCCTCCAAGGAGCTCATGGCGAAGGCGGGAAGG
TACTCCGCGTACAGTAGCACGGGTGTTGTCAAGGCGCGCAGAAGAGGGCT
GAACGGGGGTAAAGTGCCAGCCGAGGAGAGACGCGTTGTTTTCTTCCGTG
TGGGGTCGATGCCTTTGAAACGTTGTATGTCTTGTAGCCGAAGGGGAACC
GTGGAATTGGGGTGGAGCGTAGGTATTTCTTGCATTACATCTATGCCGGG
TATGGGCCACAAACCGCTGAGGTCAGGCAGAGATGTCGTCCCCGGAGATA
GGTGAAAGGTCACGAAACGCCTTTGCTTGGGCGGTGGTGGCTTGTTAGCT
ACGGAATAATCGCCTCGTGCTCGTGGTTTGCCGCAATTCCTCTGCAAGCA
TGCATGCGCAGGACGCACATAGTGTAGATAGACCTCGAGTGGGTATGTCC
GGTTCTTATCCATCCCTAATGACCGCCACGTTTTTCTTGTGTGTGTGGTG
TGTGCACGATTTTCCTGCAGCGGCGAGCTGAAAGGAGAAGAGTGGGAAAC
TCCCAAGGGGGCTCTCGCCAGGCTTCTGCTGCTCGACCAGTTCCCTCGCA
CAGTCTACCGGTGAGTACGTGTAGCCCTCGTCTCAACGCTGGACGTCGCG
CTTCGCACAATCGTTCATGGGCTGGAAAAGGATCAAGCACTGCTGTATTC
CAGCATTGATGGAATTGAATTCGAGGGCCGAGACCAGTATGTCTAATCTT
CTTCGCCTTCCCTCTTCGACGGTGCGACTCTACTCGACTAACATGCTCCC
CCCGTTTCCGTTGTAGGGGTACGTCACAAGCGTTCGCAAATGACGAGACG
GCCGCATCTTTGTCGCTCGAGATAATATCCAAGGGCTGGGACACCGTGGA
TGCCCAAAACTACACCTTTCAGCAGCGGTTGTTCGTGTATCTCCCCCTCA
TGCACTCGGAGAGGATGGAGGCTCAGGTGGCAACAATCCCTTTTCCTTGT
TGGTTTTTCTGAGTTCCGAGTTGTTTGAATTCAAATATTGCGTGTCTCAG
GTTGGAATCGCTCCGATACATGTTGTTCACCAAGTGGTATGCTATCTACC
GTTCGTTCAACGCTTCGCCATTATTTGGATTTCGGCGTCGTAACTGGTGA
CTGTATGTTAACCTCCATTCGTTGGGCCTTCACGGGCCGTCGCGCACGAA
TAAACGCTTCTTCGTTTGAGTTTCGCGTGTACACCAACCAACCCCATCTT
CACGAGGTAGAGCCTGTTGCCGTGTGGTTGACACATGTTTCATTCTCGAA
TGATTCACCAATGTTGTGAGTGAAAATCTCGCGATTTCATTGCGGTTGCA
GTTCGTGTATTGCTGTTGCTTCATTCCAATACCTCCTCGAACATGAAGAC
CCCAAGGGGATTGTAATCTCTCTTGATACGTTCACAATGGAAATAGCCAA
GCTGTTCAGAACACATCCTTCGCGCGGGGGTTATACAAGAGGCGTCAGGT
GTCAGCATGTTCGTCGATCAGTCCAAGACGAAACCCGTCGATTGCCAACA
GTTAGGCTTTTCAACTTCGTTCGATTCACAGAATCACGTTTTGGGCTTCC
ACCGTACAACGAGTCTTCACAACAGTTTTGACTCACGAATTTTGTACCAT
TTGAATATTGATACGACTACAGGACGCGGGCGTCTCGACGGTCAAGGCCC
TGGTGGACGACGAGATGAAGGCCACCGGTAGCGCCAATTCCTTGGTTCAT
GATATGGCACTGGAACACCGGGGAGTCGTAGCCAAGTTCGGAAGGTACAG
CCGATCAAGCGGTAGGGCATTTTGCTTTTGTGAAATGTAAAACTCGAGCG
TGAACAGCTCGATCATCTTGTCCGATGGTTAGTCTTCATCGCGTGTGCTG
TGGCTAAAATCATTTTGCGATTGTATGATAATTATCTCGAAATCAACACT
TGCTATTCATTGCTATGCATCTAAACAGCTAGGGACTACAAACAGTGGTG
ACCCCATCTGCCATGCAAAGGCTACGTTCTTAACACTCGGAAGGTACAGC
TAAGTATGACTGGAGTGTGGAAAACGTAATCAGAGAAAGAAAAAAAACAC
TTGTCAGTTGCCTACTAGAGCGAAACCTGACTTGCGAAAAAACGCTTTCA
TTCCTCGATCAATCCTGTTGAATATTTGCGTCTCCTCCGATGGAGACAGG
AAACAGACGCGAGTTTAGGCTCTTCCCGCACCATCCAATGAGCGTAATCA
GCTACCGCACCGACAGGCTTGCAGAATTCAGAAATCGTTGCCGAGATACG
CCACGTTCGTGTCTACGTTAGGAAAATTCACCGTTTTCCTCTGGGTTCAC
AACGTGTAGGTTATGTGCGGGCAATCAAGAGAACATGACGCGCTGAGACC
TTCTCGCCATCGACGGCAGACAGTGTTGCGTATGATGGATGTTGCGAGAG
GTGCTCCCACATCCTTCCCAACGAACACCCGATCTCTTGAGTAATTTTGT
ATGTTCCCGTGGTAACTGACCAAAAATGACAGGTTCCCCCACCGCAACGC
CGCACTCGGACGTGAGTCCACCCCAGAAGAGCTGGAGTGGCTGAGCTCCG
ACGACATCCCAGGTTGGGCAAAGAGTCAAGGCGCGTCTGAGCCTTCGTCG
CCGAGTTGAGGTGGTTCGACGTGGTCCCGCCCAAGTGCATCACCCCATTA
CCACCCCTTAGCTGCGGCTCTTTCGTAATAAGTTCCCCTGTCCGCATTGT
GCAGTACCGAATCTCATGTTTTCCTGGGTGTCTGATACGGTCGCTGTTGC
GATCGGGTTGTTTTTGGTGCTTTGGGTGAGAATTTTTTCGGTGCTTTCCG
GGGCGCTGCGCTTACTTCGTACCTTCGTGGGGAATGGGCCACTAGCCTGG
TGCACATGACTCCGTCCCGTTTCGCCGGACGCGTTCGGTGGGTCTGATTA
CCAAGCCCTCAAGCTTTCGTTTGCTCAAAAAAGAGTGGCTGAAAGCACGG
TGTGTACCGACAACGTAGTATCGACGTGTAGCTAAACTAGGGCTCGCGTA
GCCGTCGTAGGAACATAACTAAGTGTCAATAAAAGGTTGTTGTGGACAAC
TGTTGTAGAGCGGTACAATGCACGCATCGCGAGACGTCAGAATATATCCT
AACTCCGTTGCATAGCTGGCCTGGTGCGCAACTTTGACCTTTGACAAGGT
AGGCTGCGATTGTATTGTTTTCGGAATATCCTCAGGTGGTTCACGTTGGT
CAGCCACGAATGTCAAGCGCAACTGCACACGTTTGGAACCCTACCCGTTG
CGCTGCACACGTTTGGAACCCTAGTGTCCGCCGCGAAGTAGTGACCGCTG
CGAACAGAAGAACAGAGCGACTTGGCTGGGACTGAGGTTGTTTAGTGCCG
GGCATGCCGCTACGGGCAAAAAACGAGACTTCGTATTTTCAACAACGTAA
ACCCGATGAACTTACGAGACTCCCATATTTCTCAAAGGATTGTTATCAAT
ATCCTTGCAGGTTGGAACAATGCGAGAAGCCTTGTTGGCTTGTTCATTTC
TGATCATTTGTTCTCGTGCGTTGCGCGGTGGCACACGCAACTGAAACAGC
GGCGGAGAGGATGCCGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1499:14969..21086+

>mRNA_E-siliculosus-1a_F_contig1499.2893.1 ID=mRNA_E-siliculosus-1a_F_contig1499.2893.1|Name=mRNA_E-siliculosus-1a_F_contig1499.2893.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1854bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1499:14969..21086+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACTTGAGGCGTCTCCTGTTTCCAGCAGCGGCCACCTTAGCTAGGGC
AGCAGAGGTTCGGAGTTTCACGTTGACTTCCGGAGCTGCTGGTGCCGTGC
GACATTTCTCAGGAAGCCCCCGCCGACAGCAGCTCGGTGCCTTTCTTCAC
GGTTCGGAACCGCTGTCGAGATCTAGCACATGCACTTGAGGCGTCTCCTG
TTTCCAGCAGCGGCCACCTTAGCTAGGGCAGCAGAGGTTCGGAGTTTCAC
GTTGACTTCCGGAGCTGCTGGTGCCGTGCGACATTTCTCAGGAAGCCCCC
GCCGACAGCAGCTCGGTGCCTTTCTTCACGGTTCGGAACCGCTGTCGAGA
TCTAGCACGGGACGCACAGTCTCCCAGGTCAGCAGGGGCATGGCTACCGG
AGAGGGAGCGGGATCGGGGGAGATCTTGAACCTCAAGACTGCGCAAGATG
GGACGCACAGTCTCCCAGGTCAGCAGGGGCATGGCTACCGGAGAGGGAGC
GGGATCGGGGGAGATCTTGAACCTCAAGACTGCGCAAGATGTGGTGGATT
TCTGGTTCGGCACCGACTTGGCTCGCCTGGCGTCGGACAAGGAGTACGGC
CAAAGGTTCGGCGCAAAGTGGTTCGGCGCCGGTCCACCAGACCAGGCCTT
CATCGGCACCCAAAATGCCTCCAAGGAGCTCATGGCGAAGGCGGGAAGGT
GGTGGATTTCTGGTTCGGCACCGACTTGGCTCGCCTGGCGTCGGACAAGG
AGTACGGCCAAAGGTTCGGCGCAAAGTGGTTCGGCGCCGGTCCACCAGAC
CAGGCCTTCATCGGCACCCAAAATGCCTCCAAGGAGCTCATGGCGAAGGC
GGGAAGCGGCGAGCTGAAAGGAGAAGAGTGGGAAACTCCCAAGGGGGCTC
TCGCCAGGCTTCTGCTGCTCGACCAGTTCCCTCGCACAGTCTACCGCGGC
GAGCTGAAAGGAGAAGAGTGGGAAACTCCCAAGGGGGCTCTCGCCAGGCT
TCTGCTGCTCGACCAGTTCCCTCGCACAGTCTACCGGGGTACGTCACAAG
CGTTCGCAAATGACGAGACGGCCGCATCTTTGTCGCTCGAGATAATATCC
AAGGGCTGGGACACCGTGGATGCCCAAAACTACACCTTTCAGCAGCGGTT
GTTCGTGTATCTCCCCCTCATGCACTCGGAGAGGATGGAGGCTCAGGGGT
ACGTCACAAGCGTTCGCAAATGACGAGACGGCCGCATCTTTGTCGCTCGA
GATAATATCCAAGGGCTGGGACACCGTGGATGCCCAAAACTACACCTTTC
AGCAGCGGTTGTTCGTGTATCTCCCCCTCATGCACTCGGAGAGGATGGAG
GCTCAGGACGCGGGCGTCTCGACGGTCAAGGCCCTGGTGGACGACGAGAT
GAAGGCCACCGGTAGCGCCAATTCCTTGGTTCATGATATGGCACTGGAAC
ACCGGGGAGTCGTAGCCAAGTTCGGAAGGACGCGGGCGTCTCGACGGTCA
AGGCCCTGGTGGACGACGAGATGAAGGCCACCGGTAGCGCCAATTCCTTG
GTTCATGATATGGCACTGGAACACCGGGGAGTCGTAGCCAAGTTCGGAAG
GTTCCCCCACCGCAACGCCGCACTCGGACGTGAGTCCACCCCAGAAGAGC
TGGAGTGGCTGAGCTCCGACGACATCCCAGGTTGGGCAAAGAGTCAAGGC
GCGTCTGAGCCTTCGTCGCCGAGTTGAGTTCCCCCACCGCAACGCCGCAC
TCGGACGTGAGTCCACCCCAGAAGAGCTGGAGTGGCTGAGCTCCGACGAC
ATCCCAGGTTGGGCAAAGAGTCAAGGCGCGTCTGAGCCTTCGTCGCCGAG
TTGA
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